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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


show annotations for term's descendants           Sort by:
DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC1 forkhead box C1 enables IEA Ensembl GO_REF:0000107
G FOXD1 forkhead box D1 enables ISO (PMID:7957066) MGI PMID:7957066
G HHEX hematopoietically expressed homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr28:7,057,379...7,063,326
Ensembl chr28:7,057,283...7,063,330 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:22615915) DisProt PMID:22615915 NCBI chr12:3,528,818...3,538,533
Ensembl chr12:3,533,102...3,538,533 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables IEA Ensembl GO_REF:0000107 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HMGB1 high mobility group box 1 enables ISO
IBA
IEA
ISS		 RGD
GO_Central
UniProt
AgBase		 PMID:17964600 GO_REF:0000024 GO_REF:0000033 GO_REF:0000117 RGD:2316774 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165 		JBrowse link
G HMGB2 high mobility group box 2 enables IEA
IBA		 Ensembl
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606 		JBrowse link
G HMGB3 high mobility group box 3 enables IEA UniProt GO_REF:0000117 NCBI chr  X:119,152,166...119,159,803
Ensembl chr  X:119,155,786...119,159,814 		JBrowse link
G HMGB4 enables IBA GO_Central GO_REF:0000033
G LEF1 lymphoid enhancer binding factor 1 enables ISO (PMID:15236581)
(PMID:7774816)		 DisProt
UniProt		 PMID:7774816 PMID:15236581 NCBI chr32:28,516,002...28,633,759
Ensembl chr32:28,517,108...28,634,019 		JBrowse link
G SRY sex determining region Y enables ISO (PMID:7774816) UniProt PMID:7774816
G TERF1 telomeric repeat binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr29:21,664,378...21,701,491
Ensembl chr29:21,664,186...21,700,495 		JBrowse link
G TFAM transcription factor A, mitochondrial enables IBA GO_Central GO_REF:0000033 NCBI chr 4:10,585,320...10,600,664
Ensembl chr 4:10,585,480...10,598,058 		JBrowse link
G TOP1 DNA topoisomerase I enables ISO (PMID:11283003) DisProt PMID:11283003 NCBI chr24:29,075,267...29,166,733
Ensembl chr24:29,075,492...29,165,864 		JBrowse link
G TOP2A DNA topoisomerase II alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:40,624,845...40,626,840
Ensembl chr20:40,624,891...40,626,906 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 enables ISS AgBase GO_REF:0000024 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165 		JBrowse link
G HMGB2 high mobility group box 2 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606 		JBrowse link
G SAP30L SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chr 4:55,247,912...55,261,655
Ensembl chr 4:55,252,938...55,262,207 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr 1:118,777,110...118,784,397
Ensembl chr 1:118,778,224...118,778,667 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21949
    binding 19839
      nucleic acid binding 6751
        DNA binding 2232
          DNA binding, bending 18
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root