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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding

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DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 enables ISO (PMID:7957066) MGI PMID:7957066 NCBI chrNW_004955425:27,158,601...27,159,447 JBrowse link
G Hhex hematopoietically expressed homeobox enables ISO (PMID:18755198) BHF-UCL PMID:18755198 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables ISO (PMID:22615915) DisProt PMID:22615915 NCBI chrNW_004955437:2,478,414...2,486,809
Ensembl chrNW_004955437:2,478,414...2,486,809 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO (PMID:20108983)
(PMID:14627817)		 UniProt PMID:14627817 PMID:20108983 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hmgb1 high mobility group box 1 enables ISO (PMID:19223331) RGD
UniProt		 PMID:17964600 PMID:19223331 RGD:2316774 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISO (PMID:11909973), (PMID:8339930)
(PMID:11275566)		 UniProt PMID:8339930 PMID:11275566 PMID:11909973 NCBI chrNW_004955403:33,656,314...33,659,115
Ensembl chrNW_004955403:33,656,300...33,659,428 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables ISO (PMID:15236581)
(PMID:7774816)		 DisProt
UniProt		 PMID:7774816 PMID:15236581 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:9130722) BHF-UCL PMID:9130722 NCBI chrNW_004955444:7,103,282...7,149,450
Ensembl chrNW_004955444:7,103,552...7,150,323 		JBrowse link
G Top1 DNA topoisomerase I enables ISO (PMID:11283003) DisProt PMID:11283003 NCBI chrNW_004955445:15,834,017...15,922,785
Ensembl chrNW_004955445:15,834,017...15,922,785 		JBrowse link
G Top2a DNA topoisomerase II alpha enables ISO (PMID:22323612) UniProt PMID:22323612 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables ISO (PMID:25848017) MGI PMID:25848017 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chrNW_004955403:33,656,314...33,659,115
Ensembl chrNW_004955403:33,656,300...33,659,428 		JBrowse link
G Sap30l SAP30 like enables ISO (PMID:19015240) UniProt PMID:19015240 NCBI chrNW_004955408:8,827,744...8,832,588
Ensembl chrNW_004955408:8,827,738...8,832,588 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpg CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chrNW_004955468:3,137,106...3,141,733
Ensembl chrNW_004955468:3,137,106...3,141,733 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 14380
    binding 13664
      nucleic acid binding 1892
        DNA binding 1363
          DNA binding, bending 13
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root