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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


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DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXC1 forkhead box C1 enables ISO (PMID:14506133), (PMID:7957066) UniProt PMID:7957066 PMID:14506133 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G FOXD1 forkhead box D1 enables ISO (PMID:7957066) MGI PMID:7957066 NCBI chr 5:41,867,118...41,870,497 JBrowse link
G HHEX hematopoietically expressed homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:22615915) DisProt PMID:22615915 NCBI chr 6:33,807,171...33,816,603 JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:14627817)
(PMID:20108983)		 UniProt PMID:14627817 PMID:20108983 NCBI chr12:22,954,946...23,096,623 JBrowse link
G HMGB1 high mobility group box 1 enables ISO (PMID:19223331) RGD
UniProt		 PMID:17964600 PMID:19223331 RGD:2316774 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HMGB2 high mobility group box 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:100,552,959...100,674,156
Ensembl chr 4:111,125,312...111,245,980 		JBrowse link
G LOC100984603 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:72,829,188...72,893,727 JBrowse link
G LOC100986897 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:505,145...506,691 JBrowse link
G LOC103783346 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:58,446,938...58,448,548 JBrowse link
G SRY sex determining region Y enables ISO (PMID:7774816) UniProt PMID:7774816
G TERF1 telomeric repeat binding factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:69,545,115...69,583,997 JBrowse link
G TOP1 DNA topoisomerase I enables ISO (PMID:11283003) DisProt PMID:11283003 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652 		JBrowse link
G TOP2A DNA topoisomerase II alpha enables IEA Ensembl GO_REF:0000107 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HMGB2 high mobility group box 2 enables ISO (PMID:11275566) AgBase PMID:11275566 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952 		JBrowse link
G SAP30L SAP30 like enables IEA Ensembl GO_REF:0000107 NCBI chr 5:149,847,937...149,863,052
Ensembl chr 5:155,846,866...155,856,273 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPG CCAAT enhancer binding protein gamma ISO RGD PMID:1377818 RGD:69946 NCBI chr19:30,295,603...30,304,984
Ensembl chr19:39,046,219...39,046,671 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19165
    binding 17477
      nucleic acid binding 4559
        DNA binding 2196
          DNA binding, bending 18
            non-sequence-specific DNA binding, bending 3
            sequence-specific DNA binding, bending + 1
paths to the root