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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA binding, bending
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Accession:GO:0008301 term browser browse the term
Definition:The activity of binding selectively and non-covalently to and distorting the original structure of DNA, typically a straight helix, into a bend, or increasing the bend if the original structure was intrinsically bent due to its sequence.
Synonyms:exact_synonym: DNA bending activity;   DNA bending involving DNA binding


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DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07025074.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr16:25,584,241...25,585,849 JBrowse link
G AC108595.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:122,951,378...122,953,062 JBrowse link
G ENSRNOG00000063632 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:100,935,824...100,936,291 JBrowse link
G ENSRNOG00000063829 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:126,731,797...126,736,018 JBrowse link
G Foxc1 forkhead box C1 enables ISO (PMID:14506133), (PMID:7957066) RGD PMID:7957066 PMID:14506133 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxd1 forkhead box D1 enables ISO
IEA		 (PMID:7957066)
GO_REF:0000107		 RGD
Ensembl		 PMID:7957066 GO_REF:0000107 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978 		JBrowse link
G Hhex hematopoietically expressed homeobox enables ISO (PMID:18755198) RGD PMID:18755198 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Hmga1 high mobility group AT-hook 1 enables ISO (PMID:22615915) RGD PMID:22615915 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISS
ISO		 GO_REF:0000024
(PMID:14627817), (PMID:20108983)		 UniProt
RGD		 PMID:14627817 PMID:20108983 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784 		JBrowse link
G Hmgb1 high mobility group box 1 enables IDA
ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:19223331)		 AgBase
GO_Central
RGD		 PMID:19223331 PMID:17964600 GO_REF:0000024 GO_REF:0000033, RGD:2316774 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hmgb1l1 high mobility group box 1 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:79,815,176...79,816,529
Ensembl chr 1:79,815,269...79,816,511 		JBrowse link
G Hmgb1l2 high mobility group box 1 like 2 enables IBA
ISS		 GO_REF:0000033
GO_REF:0000024		 GO_Central
AgBase		 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:107,671,273...107,672,015
Ensembl chr  X:107,671,272...107,672,535 		JBrowse link
G Hmgb1l5 high mobility group box 1 like 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:11275566)
(PMID:11909973), (PMID:8339930)		 UniProt
GO_Central
RGD
AgBase		 PMID:8339930 PMID:11275566 PMID:11909973 GO_REF:0000024 GO_REF:0000033 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140 		JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 enables ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 UniProt
GO_Central
AgBase		 GO_REF:0000024 GO_REF:0000033 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669 		JBrowse link
G Hmgb2l2 high mobility group box 2 like 2 enables ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 AgBase
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr14:69,045,590...69,046,623
Ensembl chr14:69,045,641...69,046,640 		JBrowse link
G Hmgb3 high mobility group box 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:149,296,303...149,301,290
Ensembl chr  X:149,296,375...149,301,292 		JBrowse link
G Hmgb3l1 high mobility group box 3 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:49,149,415...49,150,197
Ensembl chr14:49,149,580...49,150,176 		JBrowse link
G Hmgb4 high-mobility group box 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:140,616,040...140,616,722
Ensembl chr 5:140,615,197...140,616,770 		JBrowse link
G Hmgb4l1 high-mobility group box 4 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:132,703,106...132,703,824
Ensembl chr  X:132,703,263...132,703,769 		JBrowse link
G Hmgb4l2 high-mobility group box 4 like 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:124,788,553...124,789,270
Ensembl chr  X:124,788,552...124,789,212 		JBrowse link
G Hmgb4l4 high-mobility group box 4 like 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:136,825,997...136,826,693
Ensembl chr  X:136,826,039...136,826,713 		JBrowse link
G Hmgb4l5 high-mobility group box 4 like 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:123,264,998...123,265,711
Ensembl chr  X:123,264,997...123,265,694 		JBrowse link
G Hmgb4l6 high-mobility group box 4 like 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:139,274,749...139,275,452
Ensembl chr  X:139,274,807...139,275,466 		JBrowse link
G Hmgb4l7 high-mobility group box 4 like 7 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:135,622,322...135,623,034
Ensembl chr  X:135,622,361...135,623,009 		JBrowse link
G Hmgb4l8 high-mobility group box 4 like 8 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:129,470,473...129,471,169
Ensembl chr  X:129,470,475...129,471,174 		JBrowse link
G Hmgb4l9 high-mobility group box 4 like 9 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:134,184,390...134,185,772
Ensembl chr  X:134,184,560...134,185,264 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:15236581), (PMID:7774816)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:7774816 PMID:15236581 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G LOC103690904 high mobility group protein B4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:131,862,544...131,863,238
Ensembl chr  X:131,862,544...131,863,207 		JBrowse link
G LOC103694587 high mobility group protein B4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:130,143,801...130,144,494
Ensembl chr  X:130,143,724...130,144,455 		JBrowse link
G LOC108349258 high mobility group protein B4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:136,290,250...136,290,937
Ensembl chr  X:136,290,233...136,290,934 		JBrowse link
G LOC108350839 high mobility group protein B1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:91,306,902...91,309,095
Ensembl chr10:100,935,824...100,936,291 		JBrowse link
G LOC108352140 high mobility group protein B4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:130,942,850...130,943,537
Ensembl chr  X:130,942,976...130,943,482 		JBrowse link
G LOC120099255 high mobility group protein B4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:132,449,891...132,450,601
Ensembl chr  X:132,449,946...132,450,452 		JBrowse link
G LOC120099272 high mobility group protein B4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:128,868,498...128,869,190
Ensembl chr  X:128,868,574...128,869,216 		JBrowse link
G Sry sex determining region Y enables ISO (PMID:7774816) RGD PMID:7774816 NCBI chr  Y:441,525...442,037 JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:9130722) RGD PMID:9130722 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Top1 DNA topoisomerase I enables ISO (PMID:11283003) RGD PMID:11283003 NCBI chr 3:149,293,469...149,376,618
Ensembl chr 3:149,293,403...149,376,623 		JBrowse link
G Top2a DNA topoisomerase II alpha enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22323612)		 UniProt
Ensembl
RGD		 PMID:22323612 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,945,731...83,976,874
Ensembl chr10:83,945,735...83,976,874 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables ISO (PMID:25848017) RGD PMID:25848017 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
non-sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 enables ISO (PMID:11275566) RGD PMID:11275566 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISO
ISS		 (PMID:11275566)
GO_REF:0000024		 RGD
AgBase		 PMID:11275566 GO_REF:0000024 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140 		JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 enables ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669 		JBrowse link
G Hmgb2l2 high mobility group box 2 like 2 enables ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr14:69,045,590...69,046,623
Ensembl chr14:69,045,641...69,046,640 		JBrowse link
G Sap30l SAP30-like enables ISO (PMID:19015240) RGD PMID:19015240 NCBI chr10:41,979,730...41,992,307
Ensembl chr10:41,979,687...41,987,658 		JBrowse link
RNA polymerase II cis-regulatory region sequence-specific DNA binding, bending term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpg CCAAT/enhancer binding protein gamma IDA RGD PMID:1377818 RGD:69946 NCBI chr 1:87,683,060...87,692,772
Ensembl chr 1:87,684,019...87,694,569 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20626
    binding 17717
      organic cyclic compound binding 6134
        nucleic acid binding 3844
          DNA binding 2276
            DNA binding, bending 42
              non-sequence-specific DNA binding, bending 5
              sequence-specific DNA binding, bending + 1
paths to the root