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ONTOLOGY REPORT - ANNOTATIONS


Term:cyclin/CDK positive transcription elongation factor complex
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Accession:GO:0008024 term browser browse the term
Definition:A transcription elongation factor complex that facilitates the transition from abortive to productive elongation by phosphorylating the CTD domain of the large subunit of DNA-directed RNA polymerase II, holoenzyme. Contains a cyclin and a cyclin-dependent protein kinase catalytic subunit.
Comment:See also the cellular component terms 'cyclin-dependent protein kinase activating kinase holoenzyme complex ; GO:0019907' and 'DNA-directed RNA polymerase II, holoenzyme ; GO:0016591'.
Synonyms:related_synonym: positive transcription elongation factor complex b



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cyclin/CDK positive transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 part_of ISO (PMID:23752591) RGD PMID:23752591 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Ccnk cyclin K part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
JBrowse link
G Ccnt1 cyclin T1 part_of IBA
ISO
GO_REF:0000033
(PMID:15905409), (PMID:18566585), (PMID:9499409)
GO_Central
RGD
PMID:9499409 PMID:15905409 PMID:18566585 GO_REF:0000033 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Ccnt2 cyclin T2 part_of IBA
ISO
GO_REF:0000033
(PMID:9499409)
GO_Central
RGD
PMID:9499409 GO_REF:0000033 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019
JBrowse link
G Cdk12 cyclin-dependent kinase 12 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888
JBrowse link
G Cdk13 cyclin-dependent kinase 13 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of ISS
ISO
GO_REF:0000024
(PMID:15905409), (PMID:18566585), (PMID:9499409)
(PMID:23752591)
UniProt
RGD
PMID:9499409 PMID:15905409 PMID:18566585 PMID:23752591 GO_REF:0000024 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Rb1 RB transcriptional corepressor 1 part_of
located_in
IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12037672)
Ensembl
UniProt
RGD
PMID:12037672 GO_REF:0000024 GO_REF:0000107 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
JBrowse link
G Snw1 SNW domain containing 1 located_in ISO (PMID:15905409) RGD PMID:15905409 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
P-TEFb complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnt1 cyclin T1 part_of ISO (PMID:18483487), (PMID:28431135), (PMID:29849146), (PMID:30134174) RGD PMID:18483487 PMID:28431135 PMID:29849146 PMID:30134174 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of ISS
ISO
IEA
GO_REF:0000024
(PMID:18483487), (PMID:30134174)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:18483487 PMID:30134174 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20824
    protein-containing complex 6552
      nuclear protein-containing complex 1279
        carboxy-terminal domain protein kinase complex 21
          cyclin/CDK positive transcription elongation factor complex 9
            CTDK-1 complex 0
            P-TEFb complex 2
Path 2
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      organelle 13967
        membrane-bounded organelle 12555
          intracellular membrane-bounded organelle 12003
            nucleus 7451
              nuclear lumen 4053
                nucleoplasm 3547
                  transcription elongation factor complex 71
                    cyclin/CDK positive transcription elongation factor complex 9
                      CTDK-1 complex 0
                      P-TEFb complex 2
paths to the root