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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription elongation factor complex
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Accession:GO:0008023 term browser browse the term
Definition:Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.



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transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:131,728,819...131,924,814
Ensembl chr 8:131,728,873...131,924,819
JBrowse link
G AFF4 ALF transcription elongation factor 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr 2:135,196,067...135,283,931
Ensembl chr 2:135,200,076...135,283,675
JBrowse link
G CDK9 cyclin dependent kinase 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:268,277,083...268,280,493
Ensembl chr 1:268,276,841...268,281,052
JBrowse link
G EAF1 ELL associated factor 1 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr13:2,654,829...2,671,140
Ensembl chr13:2,654,630...2,671,132
JBrowse link
G EAF2 ELL associated factor 2 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr13:138,632,541...138,681,607
Ensembl chr13:138,648,270...138,681,613
JBrowse link
G ELL elongation factor for RNA polymerase II part_of IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 2:59,277,164...59,359,986
Ensembl chr 2:59,277,184...59,359,990
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 part_of IEA
IBA
Ensembl
GO_Central
InterPro
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:102,518,605...102,591,416
Ensembl chr 2:102,518,608...102,591,394
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 part_of IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:127,781,357...127,784,803
Ensembl chr 1:127,781,403...127,784,843
JBrowse link
G ELOA elongin A part_of ISO PMID:8896449 UniProt PMID:8896449 RGD:8553414 NCBI chr 6:81,564,792...81,582,049
Ensembl chr 6:81,566,801...81,582,048
JBrowse link
G ELOF1 elongation factor 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr 2:70,192,508...70,199,926
Ensembl chr 2:70,193,725...70,199,837
JBrowse link
G ELP2 elongator acetyltransferase complex subunit 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr 6:119,885,409...119,932,126
Ensembl chr 6:119,885,463...119,932,123
JBrowse link
G ELP4 elongator acetyltransferase complex subunit 4 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:29,006,456...29,230,092
Ensembl chr 2:29,004,987...29,230,077
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor part_of ISO (PMID:9326587) UniProt PMID:9326587 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G ICE1 interactor of little elongation complex ELL subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr16:76,195,357...76,254,365
Ensembl chr16:76,195,361...76,254,318
JBrowse link
G ICE2 interactor of little elongation complex ELL subunit 2 part_of IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 1:111,489,759...111,560,751
Ensembl chr 1:111,489,772...111,561,911
JBrowse link
G LOC100738782 RNA polymerase II elongation factor ELL2 pseudogene part_of IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr  X:119,364,226...119,366,109 JBrowse link
G MLLT1 MLLT1 super elongation complex subunit part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:72,780,950...72,847,694
Ensembl chr 2:72,781,121...72,847,685
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:202,317,458...202,604,308
Ensembl chr 1:202,318,929...202,607,058
JBrowse link
G NUFIP1 nuclear FMR1 interacting protein 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:22,267,447...22,302,714
Ensembl chr11:22,267,481...22,302,707
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor part_of IBA GO_Central GO_REF:0000033 NCBI chr12:44,916,716...44,940,732
Ensembl chr12:44,917,633...44,940,273
JBrowse link
G ZC3H8 zinc finger CCCH-type containing 8 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:44,161,299...44,195,413
Ensembl chr 3:44,161,310...44,184,683
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 part_of IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr10:575,075...667,618
Ensembl chr10:575,075...667,432
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:48,700,629...48,729,480
Ensembl chr 2:48,700,974...48,729,307
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 1:119,804,992...119,842,343
Ensembl chr 1:119,805,006...119,859,434
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:48,046,487...48,053,631
Ensembl chr 6:48,046,502...48,052,038
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 4:59,252,330...59,270,117
Ensembl chr 4:59,252,337...59,270,116
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 1:129,886,798...129,942,845
Ensembl chr 1:129,886,800...129,943,181
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 7:47,641,103...47,661,353
Ensembl chr 7:47,641,162...47,659,866
JBrowse link
cyclin/CDK positive transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD4 bromodomain containing 4 part_of ISO (PMID:23752591) MGI PMID:23752591 NCBI chr 2:62,250,958...62,345,851
Ensembl chr 2:62,250,989...62,345,362
JBrowse link
G CCNK cyclin K part_of IBA GO_Central GO_REF:0000033 NCBI chr 7:120,487,140...120,514,223
Ensembl chr 7:120,487,206...120,514,014
JBrowse link
G CCNT1 cyclin T1 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 5:14,768,423...14,808,424
Ensembl chr 5:14,768,426...14,806,813
JBrowse link
G CCNT2 cyclin T2 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr15:16,974,364...17,021,293
Ensembl chr15:16,974,038...17,021,298
JBrowse link
G CDK12 cyclin dependent kinase 12 part_of IBA GO_Central GO_REF:0000033 NCBI chr12:22,755,365...22,831,397
Ensembl chr12:22,775,226...22,831,333
JBrowse link
G CDK13 cyclin dependent kinase 13 part_of IBA GO_Central GO_REF:0000033 NCBI chr18:54,310,311...54,430,060
Ensembl chr18:54,310,324...54,430,786
JBrowse link
G CDK9 cyclin dependent kinase 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:268,277,083...268,280,493
Ensembl chr 1:268,276,841...268,281,052
JBrowse link
G RB1 RB transcriptional corepressor 1 part_of
located_in
IEA
ISO
(PMID:12037672) Ensembl
UniProt
PMID:12037672 GO_REF:0000107 NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,761...19,317,690
JBrowse link
G SNW1 SNW domain containing 1 part_of
located_in
IEA
ISO
(PMID:15905409) Ensembl
UniProt
PMID:15905409 GO_REF:0000107 NCBI chr 7:100,718,298...100,749,414
Ensembl chr 7:100,718,036...100,749,356
JBrowse link
DSIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr12:34,622,775...34,629,681
Ensembl chr12:34,619,729...34,629,646
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 6:48,095,001...48,125,120
Ensembl chr 6:48,095,041...48,125,120
JBrowse link
elongin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELOA elongin A part_of IEA InterPro GO_REF:0000002 NCBI chr 6:81,564,792...81,582,049
Ensembl chr 6:81,566,801...81,582,048
JBrowse link
G ELOB elongin B part_of IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 3:39,294,099...39,298,192
Ensembl chr 3:39,293,746...39,298,097
JBrowse link
G ELOC elongin C part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:61,971,103...61,989,392
Ensembl chr 4:61,971,426...61,990,151
JBrowse link
G EPOP elongin BC and polycomb repressive complex 2 associated protein part_of IEA Ensembl GO_REF:0000107 NCBI chr12:23,435,388...23,438,235
Ensembl chr12:23,435,402...23,436,541
JBrowse link
FACT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMS22L MMS22 like, DNA repair protein part_of
located_in
IEA
ISO
(PMID:21055985) Ensembl
UniProt
PMID:21055985 GO_REF:0000107 NCBI chr 1:64,306,078...64,459,956
Ensembl chr 1:64,306,073...64,459,904
JBrowse link
G SSRP1 structure specific recognition protein 1 part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,227
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit part_of IEA
IBA
InterPro
GO_Central
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505
JBrowse link
G TONSL tonsoku like, DNA repair protein part_of
located_in
IEA
ISO
(PMID:21055983) Ensembl
UniProt
PMID:21055983 GO_REF:0000107 NCBI chr 4:349,992...361,749
Ensembl chr 4:350,060...362,167
JBrowse link
NELF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NELFA negative elongation factor complex member A part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 8:1,018,443...1,039,091
Ensembl chr 8:1,018,453...1,039,134
JBrowse link
G NELFB negative elongation factor complex member B part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107
G NELFCD negative elongation factor complex member C/D part_of IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr17:59,129,055...59,141,499
Ensembl chr17:59,129,076...59,141,499
JBrowse link
G NELFE negative elongation factor complex member E part_of IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:24,040,525...24,046,932
Ensembl chr 7:24,040,525...24,047,025
JBrowse link
P-TEFb complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNT1 cyclin T1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:14,768,423...14,808,424
Ensembl chr 5:14,768,426...14,806,813
JBrowse link
G CDK9 cyclin dependent kinase 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr 1:268,277,083...268,280,493
Ensembl chr 1:268,276,841...268,281,052
JBrowse link
super elongation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr 8:131,728,819...131,924,814
Ensembl chr 8:131,728,873...131,924,819
JBrowse link
G AFF4 ALF transcription elongation factor 4 part_of IBA GO_Central GO_REF:0000033 NCBI chr 2:135,196,067...135,283,931
Ensembl chr 2:135,200,076...135,283,675
JBrowse link
G EAF1 ELL associated factor 1 part_of IEA InterPro GO_REF:0000002 NCBI chr13:2,654,829...2,671,140
Ensembl chr13:2,654,630...2,671,132
JBrowse link
G EAF2 ELL associated factor 2 part_of IEA InterPro GO_REF:0000002 NCBI chr13:138,632,541...138,681,607
Ensembl chr13:138,648,270...138,681,613
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18473
    cellular anatomical structure 18251
      nucleoplasm 3416
        transcription elongation factor complex 49
          Cdc73/Paf1 complex 7
          DSIF complex 2
          FACT complex 4
          NELF complex 4
          cyclin/CDK positive transcription elongation factor complex + 9
          elongin complex 4
          nucleoplasmic THO complex 0
          super elongation complex 4
Path 2
Term Annotations click to browse term
  cellular_component 18473
    cellular anatomical structure 18251
      intracellular anatomical structure 13299
        intracellular organelle 11875
          intracellular membrane-bounded organelle 10717
            nucleus 6636
              nuclear lumen 3848
                nucleoplasm 3416
                  transcription elongation factor complex 49
                    Cdc73/Paf1 complex 7
                    DSIF complex 2
                    FACT complex 4
                    NELF complex 4
                    cyclin/CDK positive transcription elongation factor complex + 9
                    elongin complex 4
                    nucleoplasmic THO complex 0
                    super elongation complex 4
paths to the root