Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:transcription elongation factor complex
go back to main search page
Accession:GO:0008023 term browser browse the term
Definition:Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.


GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:35,309,172...35,516,777
Ensembl chr 7:35,380,578...35,511,446
JBrowse link
G AFF4 ALF transcription elongation factor 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr23:35,693,427...35,782,746
Ensembl chr23:35,699,094...35,782,683
JBrowse link
G CDK9 cyclin dependent kinase 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502
JBrowse link
G EAF1 ELL associated factor 1 part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr15:60,261,013...60,277,177
Ensembl chr15:60,260,967...60,277,626
JBrowse link
G EAF2 ELL associated factor 2 part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr22:58,966,640...59,025,158
Ensembl chr22:58,974,409...59,025,143
JBrowse link
G ELL elongation factor for RNA polymerase II part_of IEA InterPro
Ensembl
TreeGrafter
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:16,915,878...17,000,275
Ensembl chr 6:16,917,953...17,000,230
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 part_of IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:89,758,483...89,835,773
Ensembl chr 4:89,762,251...89,835,433
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 part_of IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr26:39,268,461...39,273,833
Ensembl chr26:39,269,538...39,273,321
JBrowse link
G ELOA elongin A part_of ISO PMID:8896449 UniProt PMID:8896449 RGD:8553414 NCBI chr20:108,922,500...108,940,510
Ensembl chr20:108,921,707...108,940,459
JBrowse link
G ELOF1 elongation factor 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 6:10,473,519...10,479,856
Ensembl chr 6:10,474,208...10,474,802
JBrowse link
G ELP2 elongator acetyltransferase complex subunit 2 part_of IEA Ensembl GO_REF:0000107 NCBI chr18:44,640,636...44,680,972
Ensembl chr18:44,636,318...44,681,339
JBrowse link
G ELP4 elongator acetyltransferase complex subunit 4 part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:33,419,313...33,679,046
Ensembl chr 1:33,421,038...33,678,990
JBrowse link
G ICE1 interactor of little elongation complex ELL subunit 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:5,150,090...5,216,864
Ensembl chr 4:5,167,199...5,216,933
JBrowse link
G ICE2 interactor of little elongation complex ELL subunit 2 part_of IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr26:23,011,228...23,068,134
Ensembl chr26:23,011,498...23,063,733
JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906
JBrowse link
G MLLT1 MLLT1 super elongation complex subunit part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 6:5,835,483...5,913,096
Ensembl chr 6:5,834,660...5,913,119
JBrowse link
G MLLT3 MLLT3 super elongation complex subunit part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 Ensembl chr12:59,324,048...59,438,174 JBrowse link
G NUFIP1 nuclear FMR1 interacting protein 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:23,023,976...23,073,154
Ensembl chr 3:23,022,207...23,081,424
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor part_of IEA TreeGrafter GO_REF:0000118 NCBI chr16:22,444,864...22,470,248 JBrowse link
G ZC3H8 zinc finger CCCH-type containing 8 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:15,284,640...15,325,931
Ensembl chr14:15,303,456...15,325,878
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 part_of IEA InterPro
Ensembl
TreeGrafter
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr25:36,167,482...36,302,918
Ensembl chr25:36,170,134...36,302,812
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:54,047,922...54,077,049
Ensembl chr 1:54,047,886...54,077,338
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr26:31,405,019...31,444,350
Ensembl chr26:31,404,537...31,445,198
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:33,990,552...33,996,673
Ensembl chr 6:33,986,916...33,996,347
JBrowse link
G PEX2 peroxisomal biogenesis factor 2 part_of IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chr 8:72,513,975...72,532,399
Ensembl chr 8:72,514,307...72,517,003
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr26:41,523,610...41,589,014
Ensembl chr26:41,522,542...41,588,948
JBrowse link
G SKIC8 SKI8 subunit of superkiller complex part_of IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chr26:5,037,386...5,062,578
Ensembl chr26:5,037,443...5,053,707
JBrowse link
cyclin/CDK positive transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD4 bromodomain containing 4 part_of ISO (PMID:23752591) MGI PMID:23752591 NCBI chr 6:13,836,332...13,883,459
Ensembl chr 6:13,836,324...13,873,877
JBrowse link
G CCNT1 cyclin T1 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:44,932,774...44,966,412
Ensembl chr11:44,937,350...44,966,018
JBrowse link
G CCNT2 cyclin T2 part_of IEA Ensembl GO_REF:0000107 NCBI chr10:19,145,163...19,183,777
Ensembl chr10:19,145,161...19,180,917
JBrowse link
G CDK12 cyclin dependent kinase 12 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr16:66,612,238...66,709,437
Ensembl chr16:66,623,785...66,708,755
JBrowse link
G CDK13 cyclin dependent kinase 13 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr21:18,551,273...18,688,889
Ensembl chr21:18,553,446...18,688,525
JBrowse link
G CDK9 cyclin dependent kinase 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502
JBrowse link
G RB1 RB transcriptional corepressor 1 located_in
part_of
ISO
IEA
(PMID:12037672) UniProt
Ensembl
PMID:12037672 GO_REF:0000107 NCBI chr 3:26,220,783...26,393,671
Ensembl chr 3:26,220,803...26,394,546
JBrowse link
G SNW1 SNW domain containing 1 located_in
part_of
ISO
IEA
(PMID:15905409) UniProt
Ensembl
PMID:15905409 GO_REF:0000107 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988
JBrowse link
DSIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit part_of IEA TreeGrafter GO_REF:0000118 NCBI chr16:35,047,874...35,054,438
Ensembl chr16:35,047,934...35,054,239
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit part_of IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chr 6:34,052,587...34,086,022
Ensembl chr 6:34,052,577...34,085,782
JBrowse link
elongin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELOA elongin A part_of IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr20:108,922,500...108,940,510
Ensembl chr20:108,921,707...108,940,459
JBrowse link
G ELOB elongin B part_of IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr 5:2,564,662...2,570,035 JBrowse link
G ELOC elongin C part_of IEA Ensembl GO_REF:0000107 NCBI chr 8:69,546,943...69,572,694
Ensembl chr 8:69,545,965...69,560,268
JBrowse link
G EPOP elongin BC and polycomb repressive complex 2 associated protein part_of IEA Ensembl GO_REF:0000107 NCBI chr16:67,517,405...67,520,630
Ensembl chr16:67,517,838...67,518,977
JBrowse link
G LOC103218574 elongin-B part_of IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr11:10,042,251...10,042,685 JBrowse link
G LOC103222466 elongin A2 part_of IEA InterPro GO_REF:0000002 NCBI chr18:33,919,013...33,922,087
Ensembl chr18:33,919,520...33,921,784
JBrowse link
G LOC103248829 elongin-B-like part_of IEA InterPro
TreeGrafter
GO_REF:0000002 GO_REF:0000118 NCBI chr 1:121,101,473...121,110,088 JBrowse link
FACT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MMS22L MMS22 like, DNA repair protein part_of
located_in
IEA
ISO
(PMID:21055985) Ensembl
UniProt
PMID:21055985 GO_REF:0000107 NCBI chr13:76,611,574...76,750,893
Ensembl chr13:76,611,517...76,750,616
JBrowse link
G SSRP1 structure specific recognition protein 1 part_of IEA TreeGrafter
Ensembl
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:15,907,874...15,918,376
Ensembl chr 1:15,908,495...15,918,596
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit part_of IEA Ensembl
TreeGrafter
UniProt
InterPro
GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr29:21,822,520...21,855,552
Ensembl chr29:21,822,393...21,855,923
JBrowse link
G TONSL tonsoku like, DNA repair protein part_of
located_in
IEA
ISO
(PMID:21055983) Ensembl
UniProt
PMID:21055983 GO_REF:0000107 NCBI chr 8:138,641,514...138,657,429
Ensembl chr 8:138,641,575...138,656,673
JBrowse link
NELF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NELFA negative elongation factor complex member A part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr27:46,759,742...46,786,835
Ensembl chr27:46,760,707...46,787,090
JBrowse link
G NELFB negative elongation factor complex member B part_of ISO (PMID:12612062) UniProt PMID:12612062 NCBI chr12:914,384...933,921 JBrowse link
G NELFB negative elongation factor complex member B part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 Ensembl chr12:913,493...932,063 JBrowse link
G NELFCD negative elongation factor complex member C/D part_of IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 2:5,146,137...5,159,965
Ensembl chr 2:5,146,575...5,159,883
JBrowse link
G NELFE negative elongation factor complex member E part_of IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:40,063,298...40,069,714
Ensembl chr17:40,063,755...40,198,451
JBrowse link
P-TEFb complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNT1 cyclin T1 part_of IEA Ensembl GO_REF:0000107 NCBI chr11:44,932,774...44,966,412
Ensembl chr11:44,937,350...44,966,018
JBrowse link
G CDK9 cyclin dependent kinase 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502
JBrowse link
super elongation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF1 ALF transcription elongation factor 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 7:35,309,172...35,516,777
Ensembl chr 7:35,380,578...35,511,446
JBrowse link
G AFF3 ALF transcription elongation factor 3 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr14:3,268,751...3,880,415
Ensembl chr14:3,270,636...3,573,300
JBrowse link
G AFF4 ALF transcription elongation factor 4 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr23:35,693,427...35,782,746
Ensembl chr23:35,699,094...35,782,683
JBrowse link
G EAF1 ELL associated factor 1 part_of IEA InterPro GO_REF:0000002 NCBI chr15:60,261,013...60,277,177
Ensembl chr15:60,260,967...60,277,626
JBrowse link
G EAF2 ELL associated factor 2 part_of IEA InterPro GO_REF:0000002 NCBI chr22:58,966,640...59,025,158
Ensembl chr22:58,974,409...59,025,143
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17889
    cellular anatomical structure 17786
      nucleoplasm 3668
        transcription elongation factor complex 52
          Cdc73/Paf1 complex 7
          DSIF complex 2
          FACT complex 4
          NELF complex 5
          cyclin/CDK positive transcription elongation factor complex + 8
          elongin complex 7
          nucleoplasmic THO complex 0
          super elongation complex 5
Path 2
Term Annotations click to browse term
  cellular_component 17889
    cellular anatomical structure 17786
      intracellular anatomical structure 14283
        intracellular organelle 12712
          intracellular membrane-bounded organelle 11358
            nucleus 7045
              nuclear lumen 4146
                nucleoplasm 3668
                  transcription elongation factor complex 52
                    Cdc73/Paf1 complex 7
                    DSIF complex 2
                    FACT complex 4
                    NELF complex 5
                    cyclin/CDK positive transcription elongation factor complex + 8
                    elongin complex 7
                    nucleoplasmic THO complex 0
                    super elongation complex 5
paths to the root