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ONTOLOGY REPORT - ANNOTATIONS


Term:phototransduction
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Accession:GO:0007602 term browser browse the term
Definition:The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
Synonyms:narrow_synonym: phototransduction, visible light, light adaptation;   phototrophin mediated phototransduction
 related_synonym: opsin
 xref: Wikipedia:Visual_phototransduction



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phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB1 arrestin beta 1 acts_upstream_of_or_within ISO (PMID:11853756) MGI PMID:11853756 NCBI chr11:70,319,935...70,411,276
Ensembl chr11:73,630,276...73,654,155
JBrowse link
G ASIC2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14762118) Ensembl
MGI
PMID:14762118 GO_REF:0000107 NCBI chr17:22,628,322...23,774,249 JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16249514) Ensembl
MGI
PMID:16249514 GO_REF:0000107 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15634774) Ensembl
MGI
PMID:15634774 GO_REF:0000107 NCBI chr16:38,160,056...38,249,474
Ensembl chr16:57,292,093...57,375,460
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11095744), (PMID:11853756), (PMID:15073279), (PMID:16249514), (PMID:17881533), (PMID:18367617) Ensembl
MGI
PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... GO_REF:0000107 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17408617), (PMID:18171936)
(PMID:29518352)
Ensembl
MGI
PMID:17408617 PMID:18171936 PMID:29518352 GO_REF:0000107 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18367617) Ensembl
MGI
PMID:18367617 GO_REF:0000107 NCBI chr 7:85,839,639...85,859,844
Ensembl chr 7:99,446,623...99,451,185
JBrowse link
G GUCA1A guanylate cyclase activator 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11493703), (PMID:15173221) Ensembl
MGI
PMID:11493703 PMID:15173221 GO_REF:0000107 NCBI chr 6:41,693,593...41,774,591
Ensembl chr 6:43,045,307...43,070,520
JBrowse link
G GUCA1B guanylate cyclase activator 1B acts_upstream_of_or_within ISO (PMID:11493703), (PMID:15173221) MGI PMID:11493703 PMID:15173221 NCBI chr 6:41,771,537...41,783,364
Ensembl chr 6:43,072,469...43,083,838
JBrowse link
G LDB3 LIM domain binding 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:83,095,625...83,164,297
Ensembl chr10:86,654,737...86,722,148
Ensembl chr10:86,654,737...86,722,148
JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IEA UniProt
InterPro
GO_REF:0000002 GO_REF:0000043 NCBI chr 7:120,724,363...120,727,649
Ensembl chr 7:133,246,131...133,251,464
JBrowse link
G OPN3 opsin 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:217,155,765...217,202,577
Ensembl chr 1:222,136,422...222,184,598
JBrowse link
G OPN4 opsin 4 involved_in ISO
IEA
RGD
Ensembl
UniProt
PMID:11834834 GO_REF:0000043 GO_REF:0000107 RGD:633348 NCBI chr10:83,082,351...83,095,161
Ensembl chr10:86,641,746...86,653,143
JBrowse link
G OPN5 opsin 5 involved_in IEA UniProt
Ensembl
GO_REF:0000043 GO_REF:0000107 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
G RCVRN recoverin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15173221) Ensembl
MGI
PMID:15173221 GO_REF:0000107 NCBI chr17:41,747,255...41,759,074
Ensembl chr17:46,490,605...46,502,962
JBrowse link
G RGR retinal G protein coupled receptor involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr10:80,660,589...80,674,636
Ensembl chr10:84,230,385...84,246,475
JBrowse link
G RHO rhodopsin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16723493) UniProt
MGI
InterPro
Ensembl
PMID:16723493 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:102,322,028...102,341,974
Ensembl chr 4:112,891,370...112,909,398
JBrowse link
G SLC24A4 solute carrier family 24 member 4 involved_in
acts_upstream_of
IEA
ISO
(PMID:28650316) Ensembl
ARUK-UCL
PMID:28650316 GO_REF:0000107 NCBI chr14:72,956,230...73,128,851
Ensembl chr14:92,299,507...92,468,939
JBrowse link
G protein-coupled opsin signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G PCP2 Purkinje cell protein 2 acts_upstream_of_or_within ISO (PMID:18768681) MGI PMID:18768681 NCBI chr19:6,921,350...6,923,618
Ensembl chr19:7,776,331...7,779,241
JBrowse link
G RHO rhodopsin ISO RGD PMID:8814134 RGD:6893595 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,364,955...47,409,199
Ensembl chr 6:48,628,478...48,658,119
JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 AIP like 1 HSP90 co-chaperone involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15365173) Ensembl
MGI
PMID:15365173 GO_REF:0000107 NCBI chr17:6,463,812...6,473,636
Ensembl chr17:6,450,420...6,461,868
JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in ISO (PMID:12196552) AgBase PMID:12196552 NCBI chr11:58,261,476...58,274,685
Ensembl chr11:61,614,818...61,616,200
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT3 G protein subunit alpha transducin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:72,422,660...72,476,887
Ensembl chr 7:86,085,465...86,139,227
JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16723493) Ensembl
MGI
PMID:16723493 GO_REF:0000107 NCBI chr10:90,361,003...90,414,169
Ensembl chr10:93,871,704...93,924,654
JBrowse link
G PNPLA2 patatin like phospholipase domain containing 2 acts_upstream_of
involved_in
ISO
IEA
(PMID:12484775) MGI
Ensembl
PMID:12484775 GO_REF:0000107 NCBI chr11:838,339...844,035
Ensembl chr11:881,934...886,896
JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of ISO (PMID:12484775) MGI PMID:12484775 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
G TTR transthyretin acts_upstream_of
involved_in
ISO
IEA
(PMID:12484775) MGI
Ensembl
PMID:12484775 GO_REF:0000107 NCBI chr18:24,809,707...24,816,713
Ensembl chr18:28,407,893...28,414,960
JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 AIP like 1 HSP90 co-chaperone involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15365178)
(PMID:15365173)
Ensembl
MGI
PMID:15365173 PMID:15365178 GO_REF:0000107 NCBI chr17:6,463,812...6,473,636
Ensembl chr17:6,450,420...6,461,868
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19380
    cellular process 18938
      signal transduction 5473
        phototransduction 28
          G protein-coupled opsin signaling pathway + 5
          UV-A, blue light phototransduction 0
          phototransduction, UV 1
          phototransduction, visible light + 11
          red, far-red light phototransduction 1
Path 2
Term Annotations click to browse term
  biological_process 19380
    response to stimulus 8566
      response to abiotic stimulus 1483
        response to radiation 520
          response to light stimulus 370
            detection of light stimulus 51
              phototransduction 28
                G protein-coupled opsin signaling pathway + 5
                UV-A, blue light phototransduction 0
                phototransduction, UV 1
                phototransduction, visible light + 11
                red, far-red light phototransduction 1
paths to the root