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ONTOLOGY REPORT - ANNOTATIONS

Term:sensory organ development
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Accession:GO:0007423 term browser browse the term
Definition:The process whose specific outcome is the progression of sensory organs over time, from its formation to the mature structure.
Synonyms:exact_synonym: sense organ development


show annotations for term's descendants           Sort by:
sensory organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:207,578,447...207,665,126
Ensembl chr 1:198,148,999...198,151,406 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275 		JBrowse link
G Bhlha15 basic helix-loop-helix family, member a15 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:15,534,123...15,538,299
Ensembl chr12:10,420,467...10,424,713 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B acts_upstream_of_or_within ISO MGI:1928295 (PMID:8789948) RGD PMID:8789948 NCBI chr 4:170,297,811...170,775,420
Ensembl chr 4:168,599,546...169,042,279 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod2 neuronal differentiation 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:83,820,092...83,824,277
Ensembl chr10:83,324,442...83,327,986 		JBrowse link
G Neurog1 neurogenin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Neurog2 neurogenin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:216,092,709...216,095,276
Ensembl chr 2:216,093,363...216,094,154 		JBrowse link
G Neurog3 neurogenin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:30,079,780...30,081,262
Ensembl chr20:30,079,780...30,081,262 		JBrowse link
G Olig1 oligodendrocyte transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:44,000,450...44,002,592
Ensembl chr11:30,514,379...30,516,521 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:43,961,585...43,964,961
Ensembl chr11:30,475,398...30,480,152 		JBrowse link
G Olig3 oligodendrocyte transcription factor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:14,081,259...14,083,336
Ensembl chr 1:14,081,328...14,082,149 		JBrowse link
G Pax2 paired box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax4 paired box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:58,023,873...58,032,265
Ensembl chr 4:57,058,462...57,063,408 		JBrowse link
G Pax5 paired box 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:63,554,784...63,741,380
Ensembl chr 5:58,765,036...58,944,326 		JBrowse link
G Pax6 paired box 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pax8 paired box 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (PMID:17728342) RGD PMID:17728342 NCBI chr  X:144,344,892...144,346,971
Ensembl chr  X:139,309,329...139,310,678 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:7555706) RGD PMID:7555706 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO
IEA		 (PMID:7555706)
GO_REF:0000107		 RGD
Ensembl		 PMID:7555706 GO_REF:0000107 NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH-like homeobox 2 acts_upstream_of_or_within ISO
IEA		 (PMID:14998930)
GO_REF:0000107		 RGD
Ensembl		 PMID:14998930 GO_REF:0000107 NCBI chr14:3,485,309...3,490,206
Ensembl chr14:3,340,465...3,345,353 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3054789 (PMID:15363391)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of ISO
IEA		 (PMID:15976303)
GO_REF:0000107		 RGD
Ensembl		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO
IEA		 MGI:2149672 (PMID:16038893)
GO_REF:0000107		 RGD
Ensembl		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:20459797) RGD PMID:20459797 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11861467)		 UniProt
RGD		 PMID:11861467 GO_REF:0000024 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO
IEA		 (PMID:11861467)
GO_REF:0000107		 RGD
Ensembl		 PMID:11861467 GO_REF:0000107 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17075007)
MGI:3701996 (PMID:17301087)		 UniProt
Ensembl
RGD		 PMID:17075007 PMID:17301087 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of ISO
IEA		 (PMID:18973577)
GO_REF:0000107		 RGD
Ensembl		 PMID:18973577 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
anterior semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:17395647)
GO_REF:0000107		 RGD
Ensembl		 PMID:17395647 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
auditory receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg10 ALG10, alpha-1,2-glucosyltransferase acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:121,335,048...121,345,517
Ensembl chr 7:121,335,042...121,340,308 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3850171 (PMID:19414487)
GO_REF:0000107		 RGD
Ensembl		 PMID:19414487 GO_REF:0000107 NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:143,084,030...143,130,948 		JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within ISO
IEA		 MGI:6455516 (PMID:31628468)
GO_REF:0000107		 RGD
Ensembl		 PMID:31628468 GO_REF:0000107 NCBI chr 4:104,614,665...104,653,122
Ensembl chr 4:104,614,676...104,653,053 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3574787 (PMID:15630379)
GO_REF:0000107		 RGD
Ensembl		 PMID:15630379 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2680653 (PMID:26084842)		 Ensembl
RGD		 PMID:26084842 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669 		JBrowse link
G Lrtomt leucine rich transmembrane and O-methyltransferase domain containing involved_in ISO
IEA		 (PMID:18794526)
GO_REF:0000107		 RGD
Ensembl		 PMID:18794526 GO_REF:0000107 NCBI chr 1:165,678,654...165,680,703
Ensembl chr 1:156,266,655...156,268,704 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO
IEA		 (PMID:23533177)
GO_REF:0000107		 RGD
Ensembl		 PMID:23533177 GO_REF:0000107 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within ISO
IEA		 MGI:4433578 (PMID:24334608)
GO_REF:0000107		 RGD
Ensembl		 PMID:24334608 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2682641 (PMID:12808454)		 GO_Central
RGD		 PMID:12808454 GO_REF:0000033 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Tmc1 transmembrane channel-like 1 acts_upstream_of_or_within ISO
IEA		 MGI:5427097 (PMID:22105175)
GO_REF:0000107		 RGD
Ensembl		 PMID:22105175 GO_REF:0000107 NCBI chr 1:218,275,249...218,446,013
Ensembl chr 1:218,276,417...218,445,955 		JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in NAS PMID:10878608 UniProt PMID:10878608 RGD:8553270 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in ISS
ISO
IEA		 PMID:10080181
(PMID:10080181)
GO_REF:0000107		 RGD
Ensembl		 PMID:10080181 PMID:10080181 GO_REF:0000107, RGD:8553713 NCBI chr 6:137,804,133...137,826,738
Ensembl chr 6:131,983,056...132,005,818 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3044585|MGI:3046196 (PMID:19154718)
GO_REF:0000107		 RGD
Ensembl		 PMID:19154718 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:3046196|MGI:3583755 (PMID:19154718) RGD PMID:19154718 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:16407553)
GO_REF:0000107		 RGD
Ensembl		 PMID:16407553 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2155983 (PMID:10364557)
GO_REF:0000107		 RGD
Ensembl		 PMID:10364557 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:4354110 (PMID:19363478) RGD PMID:19363478 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:19936227)
GO_REF:0000107		 RGD
Ensembl		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO
IEA		 MGI:5558098 (PMID:24302887)
GO_REF:0000107		 RGD
Ensembl		 PMID:24302887 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO
IEA		 (PMID:35175278)
GO_REF:0000107		 RGD
Ensembl		 PMID:35175278 GO_REF:0000107 NCBI chr 7:8,712,720...8,731,910
Ensembl chr 7:8,061,953...8,081,142 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (PMID:11138008), (PMID:11322776), (PMID:12121736), (PMID:15537665), (PMID:17050716), (PMID:23217710), (PMID:7610888), (PMID:8790740), (PMID:9039475)
GO_REF:0000107		 RGD
Ensembl		 PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO MGI:3663254 (PMID:17021174) RGD PMID:17021174 NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:16,710,980...16,813,427 		JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3850171 (PMID:19414487), (PMID:19423712)
GO_REF:0000107		 RGD
Ensembl		 PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 2:145,233,941...145,280,855
Ensembl chr 2:143,084,030...143,130,948 		JBrowse link
G Clrn2 clarin 2 involved_in ISO
IEA		 (PMID:33496845)
GO_REF:0000107		 RGD
Ensembl		 PMID:33496845 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:65,656,550...65,666,193 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO
IEA		 (PMID:35235570)
GO_REF:0000107		 RGD
Ensembl		 PMID:35235570 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO
IEA		 MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417)
GO_REF:0000107		 RGD
Ensembl		 PMID:30380417 GO_REF:0000107 NCBI chr18:34,235,734...34,249,139
Ensembl chr18:33,984,689...33,998,094 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO
IEA		 MGI:3055797|MGI:3718054 (PMID:15905332), (PMID:17876667), (PMID:23217710)
GO_REF:0000107		 RGD
Ensembl		 PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr20:6,634,058...6,644,264
Ensembl chr20:6,632,362...6,642,532 		JBrowse link
G Myo3a myosin IIIA involved_in ISO MGI:2448580 (PMID:26754646) RGD PMID:26754646 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB involved_in ISO MGI:2183924 (PMID:26754646) RGD PMID:26754646 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736), (PMID:17050716)
GO_REF:0000107		 RGD
Ensembl		 PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO MGI:3526430 (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,902,165...100,919,265
Ensembl chr10:100,403,069...100,420,598 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO
IEA		 MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (PMID:10978835), (PMID:11124469), (PMID:15537665), (PMID:16887306), (PMID:23217710)
GO_REF:0000107		 RGD
Ensembl		 PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4433578 (PMID:24334608)		 GO_Central
Ensembl
RGD		 PMID:24334608 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839 		JBrowse link
G Pls1 plastin 1 involved_in ISO
IEA		 (PMID:25124451)
GO_REF:0000107		 RGD
Ensembl		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:96,317,849...96,385,195 		JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:29961578)		 UniProt
RGD		 PMID:29961578 GO_REF:0000024 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (PMID:27269051) RGD PMID:27269051 NCBI chr17:40,751,771...40,975,611
Ensembl chr17:40,323,867...40,548,092 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:221,236,897...221,306,986
Ensembl chr 2:218,562,676...218,632,699 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857872 (PMID:10464373), (PMID:10466888)		 UniProt
Ensembl
RGD		 PMID:10464373 PMID:10466888 GO_REF:0000024 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007)
GO_REF:0000107
(PMID:21165971)		 RGD
Ensembl		 PMID:18849963 PMID:21165971 PMID:30801007 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134 		JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within ISO
IEA		 MGI:2153816 (PMID:30801007)
GO_REF:0000107		 RGD
Ensembl		 PMID:30801007 GO_REF:0000107 NCBI chr 8:51,604,974...51,676,745
Ensembl chr 8:42,707,962...42,779,707 		JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2685697 (PMID:30380417)		 GO_Central
Ensembl
RGD		 PMID:30380417 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:8,075,137...8,083,642 		JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (PMID:20510926) RGD PMID:20510926 NCBI chr 7:112,386,371...112,452,130
Ensembl chr 7:110,506,248...110,562,474 		JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4432119 (PMID:27117407)		 GO_Central
Ensembl
RGD		 PMID:27117407 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 acts_upstream_of_or_within ISO MGI:3526871 (PMID:15572692) RGD PMID:15572692 NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (PMID:10973493) RGD PMID:10973493 NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:1857891|MGI:2180721 (PMID:15366004), (PMID:16368932)
GO_REF:0000107		 RGD
Ensembl		 PMID:15366004 PMID:16368932 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO
IEA		 MGI:2448591 (PMID:11044403)
GO_REF:0000107		 RGD
Ensembl		 PMID:11044403 GO_REF:0000107 NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298 		JBrowse link
G B3glct beta 3-glucosyltransferase acts_upstream_of_or_within ISO (PMID:31600785) RGD PMID:31600785 NCBI chr12:10,291,910...10,383,190
Ensembl chr12:5,255,740...5,346,810 		JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (PMID:22179047) RGD PMID:22179047 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137|MGI:2137520 (PMID:14681194), (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 PMID:14681194 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO
IEA		 MGI:1338938 (PMID:15673568)
GO_REF:0000107		 RGD
Ensembl		 PMID:15673568 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) RGD PMID:15454078 NCBI chr 4:153,431,169...154,051,932
Ensembl chr 4:151,764,138...152,379,648 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO
IEA		 MGI:5708063 (PMID:24947469)
GO_REF:0000107		 RGD
Ensembl		 PMID:24947469 GO_REF:0000107 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO
IEA		 MGI:1933758|MGI:3840687 (PMID:19276117)
GO_REF:0000107		 RGD
Ensembl		 PMID:19276117 GO_REF:0000107 NCBI chr 1:208,084,801...208,087,680
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:37,196,765...37,285,955
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:3588650 (PMID:16207732)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207732 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1916503 (PMID:12546709) RGD PMID:12546709 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO
IEA		 MGI:88515 (PMID:12546709)
GO_REF:0000107		 RGD
Ensembl		 PMID:12546709 GO_REF:0000107 NCBI chr 8:59,989,885...59,995,532
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within ISO MGI:1857969 (PMID:10585769) RGD PMID:10585769 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in ISO
IEA		 (PMID:16960806)
GO_REF:0000107		 RGD
Ensembl		 PMID:16960806 GO_REF:0000107 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221 		JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within IEP
IEA
ISO		 GO_REF:0000107
MGI:2137511 (PMID:11381063)		 Ensembl
RGD		 PMID:11381063 PMID:8706714 GO_REF:0000107, RGD:1298813 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:11773036) RGD PMID:11773036 NCBI chr 9:73,945,332...73,947,367
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:15967433 RGD:2306661 NCBI chr 8:66,991,940...66,998,014
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr18:53,696,197...53,901,992
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO
IEA		 MGI:3042750 (PMID:15105374)
GO_REF:0000107		 RGD
Ensembl		 PMID:15105374 GO_REF:0000107 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4835411 (PMID:19155270), (PMID:23591631) RGD PMID:19155270 PMID:23591631 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO
IEA		 MGI:1856705|MGI:1857869 (PMID:10395790), (PMID:10767326)
GO_REF:0000107		 RGD
Ensembl		 PMID:10395790 PMID:10767326 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:10767326) RGD PMID:10767326 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within ISO
IEA		 MGI:2387330 (PMID:11309658)
GO_REF:0000107		 RGD
Ensembl		 PMID:11309658 GO_REF:0000107 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within ISO
IEA		 MGI:3723630 (PMID:17619227)
GO_REF:0000107		 RGD
Ensembl		 PMID:17619227 GO_REF:0000107 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (PMID:30237402) RGD PMID:30237402 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:2137525|MGI:3052418 (PMID:11782410), (PMID:15253273) RGD PMID:11782410 PMID:15253273 NCBI chr 2:187,179,668...187,181,284
Ensembl chr 2:184,490,840...184,492,456 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:98297 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845 (PMID:32049342)
GO_REF:0000107		 RGD
Ensembl		 PMID:32049342 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO
IEA		 MGI:1915913 (PMID:21296886)
GO_REF:0000107		 RGD
Ensembl		 PMID:21296886 GO_REF:0000107 NCBI chr 3:62,209,432...62,346,590
Ensembl chr 3:41,801,930...41,936,901 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO
IEA		 MGI:4942413 (PMID:21377456)
GO_REF:0000107		 RGD
Ensembl		 PMID:21377456 GO_REF:0000107 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17331197)		 UniProt
RGD		 PMID:17331197 GO_REF:0000024 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:3822474 (PMID:19093031)
GO_REF:0000107		 RGD
Ensembl		 PMID:19093031 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857713 (PMID:10196361)
GO_REF:0000107		 RGD
Ensembl		 PMID:10196361 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Lama1 laminin subunit alpha 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1862040 (PMID:9238094)
GO_REF:0000107		 RGD
Ensembl		 PMID:9238094 GO_REF:0000107 NCBI chr 1:102,974,188...102,980,358
Ensembl chr 1:93,837,597...93,843,769 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:10660670), (PMID:20568247) RGD PMID:10660670 PMID:20568247 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Mab21l1 mab-21 like 1 acts_upstream_of_or_within ISO
IEA		 (PMID:12642482)
GO_REF:0000107		 RGD
Ensembl		 PMID:12642482 GO_REF:0000107 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO MGI:3511363 (PMID:15385160) RGD PMID:15385160 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:12941696) RGD PMID:12941696 NCBI chr 2:45,081,889...45,150,555
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:2684189 (PMID:14500757)
GO_REF:0000107		 RGD
Ensembl		 PMID:14500757 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:88401 (PMID:15576400)
GO_REF:0000107		 RGD
Ensembl		 PMID:15576400 GO_REF:0000107 NCBI chr 4:131,965,676...132,177,790
Ensembl chr 4:130,409,217...130,621,145 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:5288506 (PMID:21531335)
GO_REF:0000107		 RGD
Ensembl		 PMID:21531335 GO_REF:0000107 NCBI chr 9:101,281,560...101,286,236
Ensembl chr 9:93,834,144...93,838,864 		JBrowse link
G Mtnr1a melatonin receptor 1A IEP RGD PMID:12890503 RGD:9588674 NCBI chr16:53,876,964...53,896,421
Ensembl chr16:47,144,461...47,163,919 		JBrowse link
G Mtnr1b melatonin receptor 1B IEP RGD PMID:12890503 RGD:9588674 NCBI chr 8:20,919,593...20,934,109
Ensembl chr 8:12,638,219...12,652,737 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:1857973|MGI:3055340 (PMID:19531352)
GO_REF:0000107		 RGD
Ensembl		 PMID:19531352 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:108055 (PMID:11861467) RGD PMID:11861467 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:1339708 (PMID:11861467)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:11861467 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394) RGD PMID:18477394 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO
IEA		 MGI:2176490|MGI:2176560 (PMID:15371513), (PMID:16000615)
GO_REF:0000107		 RGD
Ensembl		 PMID:15371513 PMID:16000615 GO_REF:0000107 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857673 (PMID:12756174)		 UniProt
RGD		 PMID:12756174 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:102764|MGI:108564|MGI:1856158|MGI:1931308|MGI:1934347|MGI:1934348 (PMID:11062307), (PMID:11069887), (PMID:12072567), (PMID:12183364), (PMID:12648492), (PMID:12756174), (PMID:16080917)
GO_REF:0000107		 RGD
Ensembl		 PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:4340776 (PMID:25220058) RGD PMID:25220058 NCBI chr20:12,189,767...12,278,179
Ensembl chr20:12,191,648...12,278,710 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9618168) RGD PMID:9618168 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:3530910 (PMID:16847320)
GO_REF:0000107		 RGD
Ensembl		 PMID:16847320 GO_REF:0000107 NCBI chr20:9,664,120...9,706,328
Ensembl chr20:9,662,899...9,703,727 		JBrowse link
G Prss56 serine protease 56 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:21397065)
GO_REF:0000107
MGI:5444189 (PMID:21532570)		 RGD
Ensembl		 PMID:21397065 PMID:21532570 GO_REF:0000107 NCBI chr 9:87,842,806...87,859,978
Ensembl chr 9:87,854,805...87,859,978 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA		 (PMID:20512159)
GO_REF:0000107		 RGD
Ensembl		 PMID:20512159 GO_REF:0000107 NCBI chr13:41,908,179...41,981,611
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within ISO
IEA		 MGI:1856862|MGI:2152531 (PMID:11105055), (PMID:13970081), (PMID:15789424), (PMID:17247120), (PMID:640224)
GO_REF:0000107		 RGD
Ensembl		 PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 GO_REF:0000107 NCBI chr18:59,463,347...59,467,469
Ensembl chr18:59,463,737...59,467,431 		JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO
IEA		 (PMID:19474196)
GO_REF:0000107		 RGD
Ensembl		 PMID:19474196 GO_REF:0000107 NCBI chr 3:91,841,052...91,855,295
Ensembl chr 3:91,841,052...91,855,295 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:9512345 RGD:633787 NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904), (PMID:17558409) RGD PMID:17553904 PMID:17558409 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:9376317) RGD PMID:9376317 NCBI chr 3:31,387,892...31,474,415
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934268|MGI:3052661|MGI:95729 (PMID:12195432), (PMID:12756179), (PMID:16236765), (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:97490 (PMID:12072567) RGD PMID:12072567 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc25a25 solute carrier family 25 member 25 acts_upstream_of_or_within ISO
IEA		 MGI:99778 (PMID:21296886)
GO_REF:0000107		 RGD
Ensembl		 PMID:21296886 GO_REF:0000107 NCBI chr 3:36,106,448...36,139,812
Ensembl chr 3:15,708,703...15,742,216 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:23543054)
GO_REF:0000107		 RGD
Ensembl		 PMID:23543054 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21901792)		 UniProt
Ensembl
RGD		 PMID:21901792 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO
IEA		 MGI:1856684 (PMID:14757819)
GO_REF:0000107		 RGD
Ensembl		 PMID:14757819 GO_REF:0000107 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA		 MGI:4127851|MGI:4440463 (PMID:20159594)
GO_REF:0000107		 RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO MGI:4284576 (PMID:22179047) RGD PMID:22179047 NCBI chr19:56,792,329...56,813,515
Ensembl chr19:39,883,077...39,904,269 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO		 GO_REF:0000024
(PMID:21856951)		 UniProt
RGD		 PMID:21856951 GO_REF:0000024 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO
IEA		 MGI:88180 (PMID:14681194)
GO_REF:0000107		 RGD
Ensembl		 PMID:14681194 GO_REF:0000107 NCBI chr 9:112,979,972...113,014,315
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1346018 (PMID:15905411)
GO_REF:0000107		 RGD
Ensembl		 PMID:15905411 GO_REF:0000107 NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1277163 (PMID:15905411)
GO_REF:0000107		 RGD
Ensembl		 PMID:15905411 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:104554 (PMID:15576400)
GO_REF:0000107		 RGD
Ensembl		 PMID:15576400 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within ISO
IEA		 MGI:5558098|MGI:5558100 (PMID:24302887)
GO_REF:0000107		 RGD
Ensembl		 PMID:24302887 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
G Wt1 WT1 transcription factor involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857268 (PMID:11889045)		 UniProt
RGD		 PMID:11889045 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 (PMID:27687499)
GO_REF:0000107		 RGD
Ensembl		 PMID:27687499 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857807 (PMID:11891232)
GO_REF:0000107		 RGD
Ensembl		 PMID:11891232 GO_REF:0000107 NCBI chr 4:85,812,784...85,824,964
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO MGI:2150059 (PMID:11891232) RGD PMID:11891232 NCBI chr 7:132,601,528...132,605,060
Ensembl chr 7:130,721,748...130,726,209 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:88180 (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1857654|MGI:2136986 (PMID:16154126), (PMID:16854970)
GO_REF:0000107		 RGD
Ensembl		 PMID:16154126 PMID:16854970 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO
IEA		 MGI:88464 (PMID:16051690)
GO_REF:0000107		 RGD
Ensembl		 PMID:16051690 GO_REF:0000107 NCBI chr11:56,245,998...56,378,586
Ensembl chr11:42,777,628...42,906,424 		JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO MGI:88463 (PMID:16051690) RGD PMID:16051690 NCBI chr 5:138,586,201...138,613,627
Ensembl chr 5:138,585,999...138,612,850 		JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within ISO
IEA		 MGI:2677305 (PMID:12971893)
GO_REF:0000107		 RGD
Ensembl		 PMID:12971893 GO_REF:0000107 NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO
IEA		 MGI:2149765 (PMID:12971893)
GO_REF:0000107		 RGD
Ensembl		 PMID:12971893 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (PMID:30237402) RGD PMID:30237402 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA		 MGI:2449673 (PMID:15976303)
GO_REF:0000107		 RGD
Ensembl		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:8387379)
GO_REF:0000107		 RGD
Ensembl		 PMID:8387379 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr 4:159,237,562...159,239,223 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:103223 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) RGD PMID:19000668 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1861626 (PMID:16104381)
GO_REF:0000107		 RGD
Ensembl		 PMID:16104381 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO
IEA		 MGI:3605480 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857444 (PMID:7926784)		 HGNC-UCL
Ensembl
RGD		 PMID:7926784 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO MGI:99150 (PMID:16624538) RGD PMID:16624538 NCBI chr20:4,832,013...4,835,516
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Sox12 SRY-box transcription factor 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:161,319,800...161,320,819
Ensembl chr 3:140,856,579...140,860,975 		JBrowse link
G Sox4 SRY-box transcription factor 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:35,876,298...35,881,004
Ensembl chr17:35,667,537...35,673,665 		JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:41,251,909...43,978,594
Ensembl chr16:41,252,182...43,978,594 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:106918|MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:1101770 (PMID:16624538)
GO_REF:0000107		 RGD
Ensembl		 PMID:16624538 GO_REF:0000107 NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IEA
IBA		 (PMID:18654668)
GO_REF:0000107
(PMID:19228982)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:18654668 PMID:19228982 GO_REF:0000033 GO_REF:0000107 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:20300562)
GO_REF:0000107		 RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:215,253,155...215,255,163
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA		 (PMID:26287463)
GO_REF:0000107		 RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO
IEA		 MGI:5140723 (PMID:21646512)
GO_REF:0000107		 RGD
Ensembl		 PMID:21646512 GO_REF:0000107 NCBI chr 6:123,927,657...124,025,354
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:17064680
GO_REF:0000107
(PMID:17064680)		 Ensembl
RGD		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO
IEA		 MGI:3692444 (PMID:23676271)
GO_REF:0000107		 RGD
Ensembl		 PMID:23676271 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO
IEA		 MGI:3617328 (PMID:23676271)
GO_REF:0000107		 RGD
Ensembl		 PMID:23676271 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO		 GO_REF:0000024
(PMID:21856951)		 UniProt
RGD		 PMID:21856951 GO_REF:0000024 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO
IEA		 (PMID:17609112)
GO_REF:0000107
GO_REF:0000104		 RGD
Ensembl
UniProt		 PMID:17609112 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:149,828,716...149,904,955
Ensembl chr 5:144,549,363...144,620,865 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
cochlea development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 involved_in IEA
ISO		 GO_REF:0000107
(PMID:30639848)		 Ensembl
RGD		 PMID:30639848 GO_REF:0000107 NCBI chr 8:80,226,862...80,358,728
Ensembl chr 8:71,345,837...71,477,889 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 involved_in ISO (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Calb1 calbindin 1 IEP RGD PMID:16120789 RGD:7175527 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Ccna2 cyclin A2 IEP RGD PMID:19429027 RGD:10054469 NCBI chr 2:121,355,363...121,361,762
Ensembl chr 2:119,426,089...119,433,577 		JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within
involved_in		 ISO MGI:2389021|MGI:3841145 (PMID:21925491)
(PMID:30639848)		 RGD PMID:21925491 PMID:30639848 NCBI chr19:51,402,178...51,471,572
Ensembl chr19:34,492,371...34,561,775 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856228 (PMID:13336002)
GO_REF:0000107		 RGD
Ensembl		 PMID:13336002 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO
IEA		 MGI:3574034 (PMID:21246654)
GO_REF:0000107		 RGD
Ensembl		 PMID:21246654 GO_REF:0000107 NCBI chr 4:153,890,310...153,998,078
Ensembl chr 4:153,890,206...153,993,451 		JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO
IEA		 MGI:4867020 (PMID:21303848)
GO_REF:0000107		 RGD
Ensembl		 PMID:21303848 GO_REF:0000107 NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808 		JBrowse link
G Epha4 Eph receptor A4 involved_in ISO
IEA		 (PMID:30639848)
GO_REF:0000107		 RGD
Ensembl		 PMID:30639848 GO_REF:0000107 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17557302) RGD PMID:17557302 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 involved_in ISO
IEA		 (PMID:17021187)
GO_REF:0000107		 RGD
Ensembl		 PMID:17021187 GO_REF:0000107 NCBI chr 1:117,404,446...117,517,424
Ensembl chr 1:108,268,776...108,380,917 		JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 involved_in ISO
IEA		 (PMID:17021187)
GO_REF:0000107		 RGD
Ensembl		 PMID:17021187 GO_REF:0000107 NCBI chr10:27,438,127...27,657,680
Ensembl chr10:26,936,551...27,151,251 		JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 involved_in ISO (PMID:17021187) RGD PMID:17021187 NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:108,296,124...108,698,961 		JBrowse link
G Gata2 GATA binding protein 2 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gata3 GATA binding protein 3 IEP RGD PMID:20006695 RGD:9479067 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856991 (PMID:13336002)
GO_REF:0000107		 RGD
Ensembl		 PMID:13336002 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1341884|MGI:2149672 (PMID:18302773)
GO_REF:0000107		 RGD
Ensembl		 PMID:18302773 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO
IEA		 MGI:104853|MGI:104876|MGI:2447620 (PMID:18302773)
GO_REF:0000107		 RGD
Ensembl		 PMID:18302773 GO_REF:0000107 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO
IEA		 MGI:3817268 (PMID:25605782)
GO_REF:0000107		 RGD
Ensembl		 PMID:25605782 GO_REF:0000107 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift27 intraflagellar transport 27 acts_upstream_of_or_within ISO MGI:4461616 (PMID:25605782) RGD PMID:25605782 NCBI chr 7:111,619,145...111,635,129
Ensembl chr 7:109,738,622...109,754,416 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2135272 (PMID:18066062) RGD PMID:18066062 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kcnk2 potassium two pore domain channel subfamily K member 2 IEP RGD PMID:15094499 RGD:2316534 NCBI chr13:103,297,387...103,494,686
Ensembl chr13:100,766,113...100,963,435 		JBrowse link
G Kcnk3 potassium two pore domain channel subfamily K member 3 IEP RGD PMID:15094499 RGD:2316534 NCBI chr 6:31,483,129...31,519,061
Ensembl chr 6:25,763,228...25,799,153 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:1931858 (PMID:15891643)		 Ensembl
RGD		 PMID:15891643 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in ISO
IEA		 (PMID:26196677)
GO_REF:0000107		 RGD
Ensembl		 PMID:26196677 GO_REF:0000107 NCBI chr 4:122,903,679...122,918,205
Ensembl chr 4:121,346,434...121,360,847 		JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:18420419 RGD:2317082 NCBI chr 5:77,853,560...77,967,653
Ensembl chr 5:73,058,121...73,171,932 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1856716 (PMID:13336002), (PMID:14198707), (PMID:6627025)
GO_REF:0000107		 RGD
Ensembl		 PMID:6627025 PMID:13336002 PMID:14198707 GO_REF:0000107 MGI:63006 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA		 UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107		 RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10494076 RGD:2325650 NCBI chr 1:141,526,192...141,913,575
Ensembl chr 1:132,132,849...132,503,286 		JBrowse link
G Ocm oncomodulin IEP RGD PMID:16120789 RGD:7175527 NCBI chr12:15,649,452...15,710,375
Ensembl chr12:10,586,897...10,596,707 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:17828551 RGD:13208944 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Otof otoferlin IEP RGD PMID:17229086 RGD:2316502 NCBI chr 6:25,928,018...26,024,631
Ensembl chr 6:25,928,055...26,024,631 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO
IEA		 (PMID:23533177)
GO_REF:0000107		 RGD
Ensembl		 PMID:23533177 GO_REF:0000107 NCBI chr10:60,031,441...60,090,259
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:1888378 (PMID:17167097) RGD PMID:17167097 NCBI chr20:28,756,951...28,783,422
Ensembl chr20:28,214,271...28,240,498 		JBrowse link
G Pvalb parvalbumin IEP RGD PMID:16120789 RGD:7175527 NCBI chr 7:111,653,820...111,668,469
Ensembl chr 7:109,772,593...109,784,561 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:22927466) RGD PMID:22927466 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:24064385 RGD:9999152 NCBI chr 7:25,881,557...25,936,837
Ensembl chr 7:23,994,217...24,048,079 		JBrowse link
G Slc26a5 solute carrier family 26 member 5 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:14,102,492...14,141,520
Ensembl chr 4:13,210,260...13,249,289 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:19936227)
GO_REF:0000107		 RGD
Ensembl		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Sobp sine oculis binding protein homolog involved_in ISO
IEA		 (PMID:18579736)
GO_REF:0000107		 RGD
Ensembl		 PMID:18579736 GO_REF:0000107 NCBI chr20:48,064,445...48,243,607
Ensembl chr20:46,482,765...46,663,541 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:98715 (PMID:18066062)
GO_REF:0000107		 RGD
Ensembl		 PMID:18066062 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:1915838 (PMID:18606138)
GO_REF:0000107		 RGD
Ensembl		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:70,122,474...70,132,756 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:106613 (PMID:16116426)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116426 GO_REF:0000107 NCBI chr 5:171,738,911...171,750,967
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:108100|MGI:94941 (PMID:16116426), (PMID:19008950)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO MGI:106613|MGI:2135272 (PMID:19008950) RGD PMID:19008950 NCBI chr11:93,869,834...93,887,013
Ensembl chr11:80,366,117...80,382,462 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:17433286)
GO_REF:0000107		 RGD
Ensembl		 PMID:17433286 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:20940229)
GO_REF:0000107		 RGD
Ensembl		 PMID:20940229 GO_REF:0000107 NCBI chr10:88,061,988...88,063,898
Ensembl chr10:87,561,326...87,565,334 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17395647) RGD PMID:17395647 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:20643356)
GO_REF:0000107		 RGD
Ensembl		 PMID:20643356 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hpn hepsin involved_in ISS
ISO		 GO_REF:0000024
(PMID:20683358)		 UniProt
RGD		 PMID:20683358 GO_REF:0000024 NCBI chr 1:95,464,468...95,480,169
Ensembl chr 1:86,337,087...86,352,811 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Myo3a myosin IIIA involved_in ISO (PMID:26754646) RGD PMID:26754646 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB involved_in ISO (PMID:26754646) RGD PMID:26754646 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21798896)		 Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21798896)		 Ensembl
RGD		 PMID:21798896 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA		 UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107		 RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:1857673 (PMID:16916509)		 UniProt
RGD		 PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P70323 (PMID:18231833)		 UniProt
RGD		 PMID:18231833 GO_REF:0000024 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:75,858,646...75,859,923 		JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO
IEA		 MGI:3640803 (PMID:20704721)
GO_REF:0000107		 RGD
Ensembl		 PMID:20704721 GO_REF:0000107 NCBI chr 9:21,849,756...21,916,077
Ensembl chr 9:14,351,202...14,418,494 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2655195 (PMID:12874121)
GO_REF:0000107		 RGD
Ensembl		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:2385468|MGI:3841145 (PMID:20346939)		 UniProt
Ensembl
RGD		 PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
UniProtKB:P62515 (PMID:18231833)
MGI:2179136 (PMID:17825816)		 UniProt
RGD		 PMID:17825816 PMID:18231833 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (PMID:18353863) RGD PMID:18353863 NCBI chr 8:97,531,960...97,559,988
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:33795231)
GO_REF:0000107		 RGD
Ensembl		 PMID:33795231 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO
IEA		 (PMID:10575115)
GO_REF:0000107		 RGD
Ensembl		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:110,341,581...110,474,538 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (PMID:16116426), (PMID:17433286), (PMID:18606138), (PMID:19008950), (PMID:20643356), (PMID:20940229)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 MGI:1857617|MGI:2135272 (PMID:17433286)
GO_REF:0000107		 RGD
Ensembl		 PMID:17433286 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA		 (PMID:36125046)
GO_REF:0000107		 RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352)
GO_REF:0000107		 RGD
Ensembl		 PMID:23580486 PMID:29518352 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:26607664)
GO_REF:0000107		 RGD
Ensembl		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:9071226)
GO_REF:0000107		 RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 (PMID:27687499)
GO_REF:0000107		 RGD
Ensembl		 PMID:27687499 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:17064680
GO_REF:0000107
(PMID:17064680)		 Ensembl
RGD		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Kera keratocan acts_upstream_of_or_within ISO
IEA		 UniProtKB:O60938 (PMID:10802664)
GO_REF:0000107		 RGD
Ensembl		 PMID:10802664 GO_REF:0000107 NCBI chr 7:34,284,100...34,291,555
Ensembl chr 7:32,397,382...32,404,837 		JBrowse link
G Krt12 keratin 12 involved_in
acts_upstream_of_or_within		 ISO
ISS
IEA		 (PMID:26758872)
MGI:3051854 (PMID:8977471)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:8977471 PMID:26758872 GO_REF:0000024 GO_REF:0000107 NCBI chr10:84,370,803...84,378,103
Ensembl chr10:84,370,883...84,378,045 		JBrowse link
G Limk2 LIM domain kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:3612836 (PMID:26234751)
GO_REF:0000107		 RGD
Ensembl		 PMID:26234751 GO_REF:0000107 NCBI chr14:82,384,256...82,509,755
Ensembl chr14:78,218,063...78,286,007 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (PMID:7550230)
GO_REF:0000107		 RGD
Ensembl		 PMID:7550230 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5645931 (PMID:29450535)		 Ensembl
RGD		 PMID:29450535 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (PMID:16186342) RGD PMID:16186342 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (PMID:20574024) RGD PMID:20574024 NCBI chr 9:99,822,242...99,866,722
Ensembl chr 9:92,374,574...92,419,222 		JBrowse link
ear development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (PMID:11709185), (PMID:8170972) RGD PMID:8170972 PMID:11709185 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:11709185) RGD PMID:11709185 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Bmp5 bone morphogenetic protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:2679550|MGI:3510601|MGI:3521993 (PMID:26234751)
GO_REF:0000107		 RGD
Ensembl		 PMID:26234751 GO_REF:0000107 NCBI chr 8:85,397,629...85,520,374
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2388024 (PMID:11283268)
GO_REF:0000107		 RGD
Ensembl		 PMID:11283268 GO_REF:0000107 NCBI chr20:3,047,269...3,069,277
Ensembl chr20:3,044,320...3,064,468 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:2180474 (PMID:16330189)
GO_REF:0000107		 RGD
Ensembl		 PMID:16330189 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO
IEA		 (PMID:9915973)
GO_REF:0000107		 RGD
Ensembl		 PMID:9915973 GO_REF:0000107 NCBI chr 5:155,361,031...155,462,723
Ensembl chr 5:150,077,644...150,179,371 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3836281 (PMID:26234751)
GO_REF:0000107		 RGD
Ensembl		 PMID:26234751 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO
IEA		 (PMID:19248180), (PMID:19723756)
GO_REF:0000107		 RGD
Ensembl		 PMID:19248180 PMID:19723756 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO
IEA		 MGI:1857496 (PMID:7555718)
GO_REF:0000107		 RGD
Ensembl		 PMID:7555718 GO_REF:0000107 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Hmx3 H6 family homeobox 3 involved_in ISO
IEA		 (PMID:14695375)
GO_REF:0000107		 RGD
Ensembl		 PMID:14695375 GO_REF:0000107 NCBI chr 1:195,743,411...195,745,375
Ensembl chr 1:186,313,063...186,315,201 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394) RGD PMID:18477394 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO
IEA		 MGI:4442387|MGI:4442398|MGI:5461152|MGI:5692073 (PMID:26234751)
GO_REF:0000107		 RGD
Ensembl		 PMID:26234751 GO_REF:0000107 NCBI chr 3:81,982,669...82,002,028
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO
IEA		 MGI:2662475 (PMID:25748314)
GO_REF:0000107		 RGD
Ensembl		 PMID:25748314 GO_REF:0000107 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA		 MGI:1929775 (PMID:8955271)
GO_REF:0000107		 RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:161,099,301...161,105,083
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1862038 (PMID:10932191)
GO_REF:0000107		 RGD
Ensembl		 PMID:10932191 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Gjb6 gap junction protein, beta 6 acts_upstream_of_or_within ISO MGI:2447863 (PMID:12490528) RGD PMID:12490528 NCBI chr15:35,400,147...35,410,649
Ensembl chr15:31,284,419...31,294,582 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA		 (PMID:8291537)
GO_REF:0000107		 RGD
Ensembl		 PMID:8291537 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179191 (PMID:15190012)		 UniProt
RGD		 PMID:15190012 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA		 MGI:5315747 (PMID:22228095)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:17184764)
GO_REF:0000107		 RGD
Ensembl		 PMID:17184764 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:107928 (PMID:17184764)
GO_REF:0000107
(PMID:14623956)		 RGD
Ensembl		 PMID:14623956 PMID:17184764 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO
IEA		 MGI:6113512 (PMID:28817564)
GO_REF:0000107		 RGD
Ensembl		 PMID:28817564 GO_REF:0000107 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1859647 (PMID:15958512)
GO_REF:0000107		 RGD
Ensembl		 PMID:15958512 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO MGI:3574771|MGI:3583769 (PMID:18791178) RGD PMID:18791178 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA		 MGI:4458412 (PMID:23469164)
GO_REF:0000107		 RGD
Ensembl		 PMID:23469164 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Nes nestin involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:175,735,715...175,745,631
Ensembl chr 2:173,438,734...173,447,777 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846|MGI:1857880 (PMID:10498698), (PMID:10572050) RGD PMID:10498698 PMID:10572050 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within ISO
IEA		 MGI:3575541 (PMID:15661756)
GO_REF:0000107		 RGD
Ensembl		 PMID:15661756 GO_REF:0000107 NCBI chr 1:88,139,000...88,158,714
Ensembl chr 1:79,011,745...79,030,712 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:7607067)
GO_REF:0000107		 RGD
Ensembl		 PMID:7607067 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97856 (PMID:7607067)
GO_REF:0000107		 RGD
Ensembl		 PMID:7607067 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:4129326 (PMID:21945076)
GO_REF:0000107		 RGD
Ensembl		 PMID:21945076 GO_REF:0000107 NCBI chr 9:99,521,176...99,557,966
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2388066 (PMID:19286674)
GO_REF:0000107		 RGD
Ensembl		 PMID:19286674 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA		 MGI:5315747 (PMID:22228095)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1857654 (PMID:10049573)
GO_REF:0000107		 RGD
Ensembl		 PMID:10049573 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:97490 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3777403 (PMID:18056999) RGD PMID:18056999 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (PMID:22022403) RGD PMID:22022403 NCBI chr17:33,044,446...33,051,259
Ensembl chr17:32,836,777...32,842,176 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:18832390) RGD PMID:18832390 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (PMID:28778798) RGD PMID:28778798 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA		 MGI:2682066 (PMID:28778798)
GO_REF:0000107		 RGD
Ensembl		 PMID:28778798 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191|MGI:4415718 (PMID:18985738), (PMID:19653321) RGD PMID:18985738 PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:1306784 (PMID:18653562)
GO_REF:0000107		 RGD
Ensembl		 PMID:18653562 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (PMID:17584888) RGD PMID:17584888 NCBI chr 7:135,419,864...135,450,513
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:98372 (PMID:17584888)
GO_REF:0000107		 RGD
Ensembl		 PMID:17584888 GO_REF:0000107 NCBI chr 3:78,219,421...78,272,318
Ensembl chr 3:57,812,075...57,860,342 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:15459098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15459098 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:9811866) RGD PMID:9811866 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) RGD PMID:16445854 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857515 (PMID:18436818) RGD PMID:18436818 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:16207763), (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:1353450|MGI:3043947 (PMID:16207763), (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr18:53,696,197...53,901,992
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3044226 (PMID:15056605)
GO_REF:0000107		 RGD
Ensembl		 PMID:15056605 GO_REF:0000107 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO
IBA		 (PMID:25406291)
GO_REF:0000033		 RGD
GO_Central		 PMID:25406291 GO_REF:0000033 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,399,919...157,422,448
Ensembl chr 4:155,727,925...155,750,458 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 GO_REF:0000107 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97857 (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:2159246 (PMID:10595508), (PMID:11830579)
GO_REF:0000107		 RGD
Ensembl		 PMID:10595508 PMID:11830579 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:2653120 (PMID:19754878)
GO_REF:0000107		 RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18094249)		 UniProt
Ensembl
RGD		 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:12692551)
GO_REF:0000107		 RGD
Ensembl		 PMID:12692551 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10469643) RGD PMID:10469643 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO
IEA		 MGI:1856326 (PMID:14618389)
GO_REF:0000107		 RGD
Ensembl		 PMID:14618389 GO_REF:0000107 NCBI chr13:50,045,668...50,115,903
Ensembl chr13:47,493,949...47,564,318 		JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) RGD PMID:12630957 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Myh15 myosin, heavy chain 15 IEP RGD PMID:19948655 RGD:2317122 NCBI chr11:51,621,924...51,763,037
Ensembl chr11:51,622,413...51,762,971 		JBrowse link
G Myom1 myomesin 1 IEP RGD PMID:12878677 RGD:633368 NCBI chr 9:118,362,547...118,485,954
Ensembl chr 9:110,915,943...111,039,344 		JBrowse link
G Myom2 myomesin 2 IEP RGD PMID:12878677 RGD:633368 NCBI chr16:74,520,148...74,592,658
Ensembl chr16:74,520,157...74,592,772 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846 (PMID:16638982), (PMID:21035439) RGD PMID:16638982 PMID:21035439 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 involved_in ISO
IEA		 (PMID:25030174)
GO_REF:0000107		 RGD
Ensembl		 PMID:25030174 GO_REF:0000107 NCBI chr 6:139,836,528...139,932,830
Ensembl chr 6:139,835,949...139,932,830 		JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 involved_in ISO (PMID:23818446) RGD PMID:23818446 NCBI chr19:58,596,095...58,749,239
Ensembl chr19:41,688,617...41,839,781 		JBrowse link
G Atf6 activating transcription factor 6 involved_in ISO
IEA		 (PMID:26029869)
GO_REF:0000107		 RGD
Ensembl		 PMID:26029869 GO_REF:0000107 NCBI chr13:85,460,312...85,639,959
Ensembl chr13:82,930,034...83,107,177 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO
IEA		 MGI:98715 (PMID:22228099)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228099 GO_REF:0000107 NCBI chr 2:121,362,884...121,402,473
Ensembl chr 2:119,434,760...119,474,396 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO
IEA		 (PMID:16385460)
GO_REF:0000107		 RGD
Ensembl		 PMID:16385460 GO_REF:0000107 NCBI chr 1:88,283,864...88,286,244
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO UniProtKB:P23359 (PMID:16154126) RGD PMID:16154126 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO
IEA		 UniProtKB:P23359 (PMID:16154126)
GO_REF:0000107		 RGD
Ensembl		 PMID:16154126 GO_REF:0000107 NCBI chr17:26,523,704...26,785,558
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO
IEA		 (PMID:16154126)
GO_REF:0000107		 RGD
Ensembl		 PMID:16154126 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO
IEA		 (PMID:12117821)
GO_REF:0000107		 RGD
Ensembl		 PMID:12117821 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO
ISS
IEA		 (PMID:22284829)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:22284829 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Cpamd8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 involved_in ISO (PMID:27839872) RGD PMID:27839872 NCBI chr 4:155,332,827...155,413,098
Ensembl chr 4:155,332,827...155,413,117 		JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within ISO MGI:1857595 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:73,975,914...74,006,614
Ensembl chr 9:66,482,176...66,509,896 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:73,955,204...73,957,264
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:73,945,332...73,947,367
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within ISO
IEA		 MGI:2387106 (PMID:15037589)
GO_REF:0000107		 RGD
Ensembl		 PMID:15037589 GO_REF:0000107 NCBI chr 9:73,935,798...73,937,409
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Cst3 cystatin C IEP RGD PMID:11431459 RGD:2306512 NCBI chr 3:156,790,061...156,794,116
Ensembl chr 3:136,336,920...136,340,822 		JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (PMID:21858205) RGD PMID:21858205 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4834518 (PMID:20675713) RGD PMID:20675713 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO
IEA		 (PMID:9792859)
GO_REF:0000107
MGI:1856705|MGI:1857869 (PMID:10072431), (PMID:9635428)		 RGD
Ensembl		 PMID:9635428 PMID:9792859 PMID:10072431 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxe3 forkhead box E3 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1856851 (PMID:10652278)
(PMID:27218149)		 UniProt
Ensembl
RGD		 PMID:10652278 PMID:27218149 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:29688405), (PMID:30802441)
GO_REF:0000107
(PMID:30802441)
MGI:3794302 (PMID:26234751)		 RGD
Ensembl		 PMID:26234751 PMID:29688405 PMID:30802441 GO_REF:0000107 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26908622)		 UniProt
RGD		 PMID:26908622 GO_REF:0000024 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1918742 (PMID:22228099) RGD PMID:22228099 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Ints15 integrator complex subunit 15 acts_upstream_of_or_within ISO
IEA		 (PMID:36851842)
GO_REF:0000107		 RGD
Ensembl		 PMID:36851842 GO_REF:0000107 NCBI chr12:11,245,045...11,260,170
Ensembl chr12:11,245,842...11,260,166 		JBrowse link
G Mab21l1 mab-21 like 1 involved_in ISO
IEA		 (PMID:27103078), (PMID:30487245)
GO_REF:0000107		 RGD
Ensembl		 PMID:27103078 PMID:30487245 GO_REF:0000107 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885 		JBrowse link
G Mab21l2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) RGD PMID:24906020 PMID:25719200 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Meis2 Meis homeobox 2 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:97490 (PMID:12183364)		 GO_Central
Ensembl
RGD		 PMID:12183364 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:123,197,066...123,399,002
Ensembl chr 3:102,742,900...102,949,696 		JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691 		JBrowse link
G Pbx2 PBX homeobox 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,151,500...4,156,425
Ensembl chr20:4,151,500...4,156,425 		JBrowse link
G Pbx3 PBX homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791 		JBrowse link
G Pbx4 PBX homeobox 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:19,588,998...19,624,016
Ensembl chr16:19,555,090...19,590,014 		JBrowse link
G Pxdn peroxidasin involved_in ISO
IEA		 (PMID:31817535)
GO_REF:0000107		 RGD
Ensembl		 PMID:31817535 GO_REF:0000107 NCBI chr 6:52,308,347...52,385,943
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:59,639,264...59,670,653
Ensembl chr17:54,943,955...54,976,043 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA		 (PMID:10232633)
(PMID:15994349)
GO_REF:0000107		 RGD
Ensembl		 PMID:10232633 PMID:15994349 GO_REF:0000107 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Sall2 spalt-like transcription factor 2 involved_in ISO (PMID:24412933) RGD PMID:24412933 NCBI chr15:27,494,831...27,512,402
Ensembl chr15:25,021,345...25,038,918 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO
IEA		 (PMID:20137777)
GO_REF:0000107		 RGD
Ensembl		 PMID:20137777 GO_REF:0000107 NCBI chr10:17,422,906...17,538,977
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:26231217)		 UniProt
Ensembl
RGD		 PMID:26231217 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:93,746,187...93,953,606
Ensembl chr 1:84,618,719...84,703,802 		JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:18791198)
(PMID:12050133)
GO_REF:0000033		 RGD
GO_Central		 PMID:12050133 PMID:18791198 GO_REF:0000033 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Six6 SIX homeobox 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,634,568...91,639,548
Ensembl chr 6:91,634,568...91,639,548 		JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in ISO
IEA		 (PMID:24891338)
GO_REF:0000107		 RGD
Ensembl		 PMID:24891338 GO_REF:0000107 NCBI chr 7:1,409,360...1,415,407
Ensembl chr 7:824,818...830,242 		JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:27018474)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:27018474 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:79,988,540...80,011,262
Ensembl chr 1:79,988,612...80,011,254 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO
IEA		 (PMID:21194678)
GO_REF:0000107		 RGD
Ensembl		 PMID:21194678 GO_REF:0000107 NCBI chr 6:106,432,592...106,593,956
Ensembl chr 6:100,701,346...100,862,699 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO
IEA		 (PMID:18285410)
GO_REF:0000107		 RGD
Ensembl		 PMID:18285410 GO_REF:0000107 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15944186)		 UniProt
Ensembl
RGD		 PMID:15944186 GO_REF:0000024 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in ISO
IEA		 (PMID:26644582)
GO_REF:0000107		 RGD
Ensembl		 PMID:26644582 GO_REF:0000107 NCBI chr 1:250,694,922...250,706,319
Ensembl chr 1:240,745,641...240,757,009 		JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:54,940,768...55,090,151
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:11456441) RGD PMID:11456441 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA		 (PMID:8291537)
GO_REF:0000107		 RGD
Ensembl		 PMID:8291537 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:7,623,528...7,868,206
Ensembl chr 5:2,840,765...3,084,929 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA		 MGI:2676366 (PMID:12915475), (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:12915475 PMID:21052544 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 acts_upstream_of_or_within
involved_in		 ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:131,855,890...131,908,217
Ensembl chr 3:131,852,552...131,908,156 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO
IEA		 MGI:3612338 (PMID:16043865)
GO_REF:0000107		 RGD
Ensembl		 PMID:16043865 GO_REF:0000107 NCBI chr10:106,121,038...106,139,683
Ensembl chr10:105,634,783...105,641,322 		JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within ISO MGI:2446461 (PMID:12019334) RGD PMID:12019334 NCBI chr 5:52,242,564...52,286,255
Ensembl chr 5:47,452,150...47,489,809 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:2152779 (PMID:16249514)
GO_REF:0000107		 RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3783323 (PMID:18367617)
GO_REF:0000107		 RGD
Ensembl		 PMID:18367617 GO_REF:0000107 NCBI chr 4:32,960,945...32,963,930
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:69,261,343...69,269,081
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:202,729,610...202,952,120
Ensembl chr 2:202,729,936...202,952,112 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:1856158 (PMID:12648492)
GO_REF:0000107		 RGD
Ensembl		 PMID:12648492 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Poc5 POC5 centriolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:29,454,392...29,483,468
Ensembl chr 2:27,719,762...27,748,805 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO
IEA		 MGI:3605621|MGI:3608904|MGI:4881674 (PMID:20463215)
GO_REF:0000107		 RGD
Ensembl		 PMID:20463215 GO_REF:0000107 NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within ISO
IEA		 MGI:3526850|MGI:3608904 (PMID:16267237)
GO_REF:0000107		 RGD
Ensembl		 PMID:16267237 GO_REF:0000107 NCBI chr 2:114,250,398...114,310,784
Ensembl chr 2:112,321,929...112,382,352 		JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:9,273,787...9,282,255
Ensembl chr16:9,267,538...9,276,006 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16574740)		 UniProt
Ensembl
RGD		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO
IEA		 MGI:2386674 (PMID:12651948)
GO_REF:0000107		 RGD
Ensembl		 PMID:12651948 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO MGI:2655714 (PMID:12651948) RGD PMID:12651948 NCBI chr15:27,282,997...27,341,021
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) RGD PMID:16445854 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO
IEA		 (PMID:19218615)
GO_REF:0000107		 RGD
Ensembl		 PMID:19218615 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (PMID:16465590) RGD PMID:16465590 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:110,582,479...110,720,516
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753 (PMID:14625556) RGD PMID:14625556 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO MGI:98354 (PMID:9030684) RGD PMID:9030684 NCBI chr14:95,378,626...95,551,358
Ensembl chr14:91,177,067...91,344,382 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856837 (PMID:21262862)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262862 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (PMID:21093383) RGD PMID:21093383 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (PMID:21093383) RGD PMID:21093383 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
UniProtKB:Q04999 (PMID:14551263)		 UniProt
Ensembl
RGD		 PMID:14551263 GO_REF:0000024 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA		 MGI:2673694 (PMID:25224220)
GO_REF:0000107		 RGD
Ensembl		 PMID:25224220 GO_REF:0000107 NCBI chr 5:115,009,900...115,012,993
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Kmt2c lysine methyltransferase 2C acts_upstream_of_or_within ISO MGI:3693319 (PMID:17021013) RGD PMID:17021013 NCBI chr 4:10,353,698...10,755,965
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:23201579), (PMID:25224220) RGD PMID:23201579 PMID:25224220 NCBI chr 2:45,081,889...45,150,555
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19389375)		 UniProt
Ensembl
RGD		 PMID:19389375 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5645931 (PMID:29450535)		 Ensembl
RGD		 PMID:29450535 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:95294 (PMID:9030684)
GO_REF:0000107		 RGD
Ensembl		 PMID:9030684 GO_REF:0000107 NCBI chr 6:20,286,117...20,363,350
Ensembl chr 6:14,533,360...14,611,107 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15254231)		 UniProt
Ensembl
RGD		 PMID:15254231 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA		 MGI:2445832|MGI:3522206 (PMID:20047077)
GO_REF:0000107		 RGD
Ensembl		 PMID:20047077 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:9811866)		 UniProt
RGD		 PMID:9811866 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
fungiform papilla development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO
IEA		 MGI:3582610 (PMID:17284610)
GO_REF:0000107		 RGD
Ensembl		 PMID:17284610 GO_REF:0000107 NCBI chr 7:131,801,046...131,806,850
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
fungiform papilla formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17128274)
GO_REF:0000107		 RGD
Ensembl		 PMID:17128274 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (PMID:21093383) RGD PMID:21093383 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (PMID:21093383) RGD PMID:21093383 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
fungiform papilla morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:21978088)
GO_REF:0000107		 RGD
Ensembl		 PMID:21978088 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:21978088) RGD PMID:21978088 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:30936473)		 UniProt
Ensembl
RGD		 PMID:30936473 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,605,403...58,669,339
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr12:12,333,050...12,504,750
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within ISO (PMID:19557008) RGD PMID:19557008 NCBI chr17:15,659,208...15,668,115
Ensembl chr17:15,452,813...15,461,704 		JBrowse link
G Opn4 opsin 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr16:9,926,638...9,935,810
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Opn5 opsin 5 involved_in ISO (PMID:30936473) RGD PMID:30936473 NCBI chr 9:25,865,610...25,913,315
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr 1:110,348,447...110,388,499
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc6a3 solute carrier family 6 member 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:30936473)		 UniProt
Ensembl
RGD		 PMID:30936473 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:31,537,990...31,578,962
Ensembl chr 1:29,709,443...29,750,413 		JBrowse link
G Th tyrosine hydroxylase involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2155983|MGI:2155984 (PMID:11973280), (PMID:15543141)
GO_REF:0000107
(PMID:19154718)		 RGD
Ensembl		 PMID:11973280 PMID:15543141 PMID:19154718 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:95524 (PMID:17555714)
GO_REF:0000107		 RGD
Ensembl		 PMID:17555714 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856228 (PMID:12121736)
GO_REF:0000107		 RGD
Ensembl		 PMID:12121736 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Clrn2 clarin 2 acts_upstream_of_or_within ISO
IEA		 MGI:5792002|MGI:6458758 (PMID:31448880)
GO_REF:0000107		 RGD
Ensembl		 PMID:31448880 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:65,656,550...65,666,193 		JBrowse link
G Cux1 cut-like homeobox 1 acts_upstream_of_or_within ISO MGI:2388352 (PMID:11544187) RGD PMID:11544187 NCBI chr12:25,728,393...26,062,497
Ensembl chr12:20,107,311...20,425,866
Ensembl chr 4:20,107,311...20,425,866 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of ISO MGI:1932522|MGI:3044907 (PMID:16495313) RGD PMID:16495313 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of ISO
IEA		 (PMID:12417662)
GO_REF:0000107		 RGD
Ensembl		 PMID:12417662 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf20 fibroblast growth factor 20 acts_upstream_of_or_within ISO
IEA		 (PMID:18524904)
GO_REF:0000107		 RGD
Ensembl		 PMID:18524904 GO_REF:0000107 NCBI chr16:58,734,003...58,741,650
Ensembl chr16:52,010,194...52,038,204 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of
acts_upstream_of_or_within		 ISO MGI:1931521 (PMID:17117437)
MGI:1931521|MGI:88180 (PMID:17117437), (PMID:17555714), (PMID:17557302)		 RGD PMID:17117437 PMID:17555714 PMID:17557302 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,042,434...2,051,814 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:2681910 (PMID:12405956)
GO_REF:0000107		 RGD
Ensembl		 PMID:12405956 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Gsdme gasdermin E acts_upstream_of_or_within ISO
IEA		 MGI:3583715 (PMID:16023581)
GO_REF:0000107		 RGD
Ensembl		 PMID:16023581 GO_REF:0000107 NCBI chr 4:80,590,344...80,651,943
Ensembl chr 4:79,257,804...79,320,806 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO
IEA		 MGI:104876|MGI:1341800 (PMID:21300049)
GO_REF:0000107		 RGD
Ensembl		 PMID:21300049 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of ISO MGI:104853|MGI:1341800 (PMID:21300049) RGD PMID:21300049 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within IMP
IEA
ISO		 GO_REF:0000107
MGI:1932522|MGI:3623344 (PMID:16495313)		 Ensembl
RGD		 PMID:16495313 PMID:10887092 GO_REF:0000107, RGD:1582345 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Kcnma1 potassium calcium-activated channel subfamily M alpha 1 acts_upstream_of_or_within ISO MGI:3050114 (PMID:15328414), (PMID:17074442) RGD PMID:15328414 PMID:17074442 NCBI chr15:351,065...1,057,117
Ensembl chr15:302,214...1,001,198 		JBrowse link
G Mcoln3 mucolipin TRP cation channel 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856230 (PMID:12403827)
GO_REF:0000107		 RGD
Ensembl		 PMID:12403827 GO_REF:0000107 NCBI chr 2:237,596,544...237,705,770
Ensembl chr 2:234,966,010...235,043,047 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:52,539,714...52,554,465
Ensembl chr18:52,539,917...52,554,461 		JBrowse link
G Myo6 myosin VI acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:1856555 (PMID:10525338), (PMID:5980120), (PMID:7493015)
GO_REF:0000033		 RGD
GO_Central		 PMID:5980120 PMID:7493015 PMID:10525338 GO_REF:0000033 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:12121736), (PMID:15389316)
GO_REF:0000107		 RGD
Ensembl		 PMID:11753415 PMID:12121736 PMID:15389316 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO
IEA		 MGI:1856394 (PMID:16481439)
GO_REF:0000107		 RGD
Ensembl		 PMID:16481439 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Pls3 plastin 3 IEP RGD PMID:12378542 RGD:731234 NCBI chr  X:116,401,247...116,495,898
Ensembl chr  X:111,589,254...111,683,891 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857425|MGI:2176270 (PMID:12585968), (PMID:8637595)
GO_REF:0000107		 RGD
Ensembl		 PMID:8637595 PMID:12585968 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,390,205...34,392,797 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO MGI:2651858|MGI:2651859 (PMID:14519688) RGD PMID:14519688 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush2a usherin acts_upstream_of_or_within ISO
IEA		 MGI:3702040 (PMID:17360538)
GO_REF:0000107		 RGD
Ensembl		 PMID:17360538 GO_REF:0000107 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
inner ear development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3046273 (PMID:16775142) RGD PMID:16775142 NCBI chr 2:13,067,149...13,647,407
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B acts_upstream_of_or_within ISO MGI:5003050 (PMID:21636789) RGD PMID:21636789 NCBI chr 5:65,538,872...65,561,305
Ensembl chr 5:60,743,443...60,765,717 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3767172 (PMID:21146598)
GO_REF:0000107		 RGD
Ensembl		 PMID:21146598 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO MGI:1857136 (PMID:7605630) RGD PMID:7605630 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmper BMP-binding endothelial regulator acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 8:30,008,049...30,253,201
Ensembl chr 8:21,732,225...21,977,256 		JBrowse link
G C1qb complement C1q B chain acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 5:154,402,276...154,407,827
Ensembl chr 5:149,118,846...149,124,407 		JBrowse link
G C1qtnf5 C1q and TNF related 5 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 8:53,347,754...53,349,912
Ensembl chr 8:44,451,154...44,453,074 		JBrowse link
G Ccm2 CCM2 scaffold protein acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr14:81,418,418...81,464,114
Ensembl chr14:81,418,236...81,464,116 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856228|MGI:1856681|MGI:3028349 (PMID:13336002), (PMID:14759567), (PMID:8790740)
GO_REF:0000107		 RGD
Ensembl		 PMID:8790740 PMID:13336002 PMID:14759567 GO_REF:0000107 MGI:79257 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:1857146 (PMID:10079221) RGD PMID:10079221 NCBI chr 4:169,491,273...169,496,500
Ensembl chr 4:167,760,181...167,764,982 		JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 1:96,896,584...96,899,256
Ensembl chr 1:87,759,433...87,762,412 		JBrowse link
G Cebpd CCAAT/enhancer binding protein delta acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr11:98,268,856...98,269,994
Ensembl chr11:84,764,565...84,765,829 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA		 (PMID:10100048)
GO_REF:0000107		 RGD
Ensembl		 PMID:10100048 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Cxcl14 C-X-C motif chemokine ligand 14 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr17:8,323,150...8,331,176
Ensembl chr17:8,317,933...8,324,839 		JBrowse link
G Cys1 cystin 1 acts_upstream_of_or_within ISO MGI:1856831 (PMID:1952600) RGD PMID:1952600 NCBI chr 6:47,029,440...47,046,671
Ensembl chr 6:41,300,836...41,318,071 		JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:3044907 (PMID:16495313) RGD PMID:16495313 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Duox2 dual oxidase 2 acts_upstream_of_or_within ISO
IEA		 MGI:3712359 (PMID:17440044)
GO_REF:0000107		 RGD
Ensembl		 PMID:17440044 GO_REF:0000107 NCBI chr 3:129,680,543...129,698,886
Ensembl chr 3:109,226,924...109,245,902 		JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO		 GO_REF:0000024
(PMID:17765677)		 UniProt
RGD		 PMID:17765677 GO_REF:0000024 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:106,008,095...106,160,791 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 IEP RGD PMID:11159937 RGD:1598918 NCBI chr 1:23,991,431...24,235,132
Ensembl chr 1:22,172,275...22,415,976 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17117437) RGD PMID:17117437 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785 		JBrowse link
G Gjb2 gap junction protein, beta 2 IEP RGD PMID:10570462 RGD:1599834 NCBI chr15:35,375,977...35,393,817
Ensembl chr15:31,260,357...31,278,177 		JBrowse link
G Gjb6 gap junction protein, beta 6 IEP RGD PMID:10570462 RGD:1599834 NCBI chr15:35,400,147...35,410,649
Ensembl chr15:31,284,419...31,294,582 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:98297 (PMID:17395647)
GO_REF:0000107		 RGD
Ensembl		 PMID:17395647 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856991 (PMID:13336002)
GO_REF:0000107		 RGD
Ensembl		 PMID:13336002 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxa13 homeo box A13 acts_upstream_of_or_within ISO
IEA		 MGI:2152356 (PMID:18483557)
GO_REF:0000107		 RGD
Ensembl		 PMID:18483557 GO_REF:0000107 NCBI chr 4:82,689,566...82,691,701
Ensembl chr 4:81,358,956...81,361,091 		JBrowse link
G Hpca hippocalcin acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 5:146,739,978...146,750,961
Ensembl chr 5:141,455,613...141,463,841 		JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:22,282,930...22,359,296 		JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr14:31,091,681...31,151,623
Ensembl chr14:30,737,164...30,797,314 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in ISO
IEA		 (PMID:19389353)
GO_REF:0000107		 RGD
Ensembl		 PMID:19389353 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11120752), (PMID:15498462)
MGI:2389447 (PMID:15385447)		 UniProt
Ensembl
RGD		 PMID:11120752 PMID:15385447 PMID:15498462 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669 		JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 7:52,973,151...53,107,964
Ensembl chr 7:51,088,239...51,222,446 		JBrowse link
G Lhx3 LIM homeobox 3 involved_in ISO
IEA		 (PMID:18407919)
GO_REF:0000107		 RGD
Ensembl		 PMID:18407919 GO_REF:0000107 NCBI chr 3:29,424,620...29,432,637
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 7:42,586,704...42,742,609
Ensembl chr 7:42,586,719...42,730,550 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Lrp10 LDL receptor related protein 10 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr15:31,891,358...31,897,530
Ensembl chr15:27,920,259...27,927,505 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr13:45,066,027...45,112,326
Ensembl chr13:42,513,762...42,560,457 		JBrowse link
G Mnda myeloid cell nuclear differentiation antigen acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr13:88,550,224...88,567,892
Ensembl chr13:86,017,892...86,034,201 		JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 involved_in ISO (PMID:16041630) RGD PMID:16041630 NCBI chr 6:25,221,668...25,236,241
Ensembl chr 6:25,222,896...25,236,244 		JBrowse link
G Msx1 msh homeobox 1 involved_in ISO (PMID:7914451) RGD PMID:7914451 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Myo3a myosin IIIA acts_upstream_of_or_within ISO MGI:4849286 (PMID:21165622) RGD PMID:21165622 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo6 myosin VI acts_upstream_of_or_within ISO MGI:1856555 (PMID:10525338), (PMID:5980120), (PMID:7493015) RGD PMID:5980120 PMID:7493015 PMID:10525338 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1856716|MGI:1860092|MGI:2155423 (PMID:13336002), (PMID:14198707), (PMID:6627025), (PMID:9435277)
GO_REF:0000107		 RGD
Ensembl		 PMID:6627025 PMID:9435277 PMID:13336002 PMID:14198707 GO_REF:0000107 MGI:63006 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11152640)		 UniProt
RGD		 PMID:11152640 GO_REF:0000024 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA		 UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107		 RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Nherf2 NHERF family PDZ scaffold protein 2 IEP RGD PMID:16160858 RGD:1643220 NCBI chr10:14,167,005...14,177,519
Ensembl chr10:13,662,461...13,673,049 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1855958|MGI:2151877|MGI:2183469 (PMID:10978835), (PMID:15811708)
GO_REF:0000107
GO_REF:0000002		 RGD
Ensembl
InterPro		 PMID:10978835 PMID:15811708 GO_REF:0000002 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Pdgfa platelet derived growth factor subunit A IEP RGD PMID:15267171 RGD:2292167 NCBI chr12:20,759,366...20,780,337
Ensembl chr12:15,645,541...15,666,497 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEP RGD PMID:15267171 RGD:2292167 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEP RGD PMID:15267171 RGD:2292167 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Phox2b paired-like homeobox 2b acts_upstream_of_or_within ISO
IEA		 MGI:1926861 (PMID:12885554)
GO_REF:0000107		 RGD
Ensembl		 PMID:12885554 GO_REF:0000107 NCBI chr14:41,420,011...41,424,527
Ensembl chr14:41,066,264...41,068,978 		JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta involved_in ISS
IBA
ISO
IEA		 GO_REF:0000024
GO_REF:0000033
(PMID:33358777)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:33358777 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:185,229,392...185,261,697
Ensembl chr 2:182,540,567...182,588,488 		JBrowse link
G Plppr4 phospholipid phosphatase related 4 acts_upstream_of_or_within ISO
IEA		 (PMID:21795542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21795542 GO_REF:0000107 NCBI chr 2:208,056,206...208,097,191
Ensembl chr 2:205,371,322...205,412,302 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 acts_upstream_of_or_within ISO MGI:1856631|MGI:1857990 (PMID:10587581), (PMID:15655183) RGD PMID:10587581 PMID:15655183 NCBI chr  X:79,974,808...79,976,085
Ensembl chr  X:75,858,646...75,859,923 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857425 (PMID:9256502), (PMID:9735355)
GO_REF:0000107		 RGD
Ensembl		 PMID:9256502 PMID:9735355 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,390,205...34,392,797 		JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2386336 (PMID:20186345)
GO_REF:0000107		 RGD
Ensembl		 PMID:20186345 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISO
IEA		 (PMID:12058348)
GO_REF:0000107		 RGD
Ensembl		 PMID:12058348 GO_REF:0000107 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Ror1 receptor tyrosine kinase-like orphan receptor 1 involved_in ISO
IEA		 (PMID:27162350)
GO_REF:0000107		 RGD
Ensembl		 PMID:27162350 GO_REF:0000107 NCBI chr 5:119,859,744...120,203,573
Ensembl chr 5:114,744,304...115,088,155 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G RT1-A2 RT1 class Ia, locus A2 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr20:4,872,720...4,876,425 JBrowse link
G RT1-DMa RT1 class II, locus DMa acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr20:4,708,932...4,712,335
Ensembl chr20:4,707,028...4,710,432 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934261|MGI:95729 (PMID:17395647)
GO_REF:0000107		 RGD
Ensembl		 PMID:17395647 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:19389353)
GO_REF:0000107		 RGD
Ensembl		 PMID:19389353 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Slc25a27 solute carrier family 25, member 27 IEP RGD PMID:21397696 RGD:6482846 NCBI chr 9:24,804,183...24,831,219
Ensembl chr 9:17,307,023...17,332,731 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO
IEA
IBA		 (PMID:18407919)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:18407919 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP RGD PMID:11335086 RGD:2300061 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Stox1 storkhead box 1 involved_in ISO
IEA		 (PMID:25677106)
GO_REF:0000107		 RGD
Ensembl		 PMID:25677106 GO_REF:0000107 NCBI chr20:31,140,993...31,209,126
Ensembl chr20:30,598,168...30,666,939 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:16479080 RGD:2302094 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IEP
IEA
ISO		 GO_REF:0000107
(PMID:9217007)		 Ensembl
RGD		 PMID:9217007 PMID:16479080 GO_REF:0000107, RGD:2302094 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IEP RGD PMID:16479080 RGD:2302094 NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:105,704,236...105,726,564 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:11921339) RGD PMID:11921339 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,262,516...61,461,505 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:3043947 (PMID:23536097)
GO_REF:0000107		 RGD
Ensembl		 PMID:23536097 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2155983|MGI:2155984 (PMID:15543141), (PMID:16145671)
GO_REF:0000107		 RGD
Ensembl		 PMID:15543141 PMID:16145671 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in		 ISS
ISO		 GO_REF:0000024
(PMID:12782355)
(PMID:19639346)		 UniProt
RGD		 PMID:12782355 PMID:19639346 GO_REF:0000024 NCBI chr 4:117,781,444...117,800,103
Ensembl chr 4:116,223,799...116,242,475 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO
IEA		 (PMID:24413176)
GO_REF:0000107		 RGD
Ensembl		 PMID:24413176 GO_REF:0000107 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:11921339) RGD PMID:11921339 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,471,668...13,597,016 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:1856229|MGI:1856681|MGI:2665714 (PMID:15925194), (PMID:7610888)
GO_REF:0000107		 RGD
Ensembl		 PMID:7610888 PMID:15925194 GO_REF:0000107 MGI:61210 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (PMID:12842012) RGD PMID:12842012 NCBI chr 7:118,867,450...119,004,859
Ensembl chr 7:116,987,605...117,125,164 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:15300250)
GO_REF:0000107
MGI:3511552 (PMID:15353999)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15300250 PMID:15353999 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within ISO
IEA		 MGI:3774038 (PMID:18077337)
GO_REF:0000107		 RGD
Ensembl		 PMID:18077337 GO_REF:0000107 NCBI chr 1:165,898,932...165,905,348
Ensembl chr 1:156,487,279...156,491,476 		JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit acts_upstream_of_or_within ISO
IEA		 MGI:2158742 (PMID:18077337)
GO_REF:0000107		 RGD
Ensembl		 PMID:18077337 GO_REF:0000107 NCBI chr14:42,588,948...42,595,669
Ensembl chr14:42,235,226...42,242,192 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:1952599) RGD PMID:1952599 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA		 MGI:1857275 (PMID:9165353)
GO_REF:0000107		 RGD
Ensembl		 PMID:9165353 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:101927|MGI:2180474 (PMID:12142028), (PMID:16900517)
GO_REF:0000107		 RGD
Ensembl		 PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO
IEA		 MGI:101926 (PMID:16900517)
GO_REF:0000107		 RGD
Ensembl		 PMID:16900517 GO_REF:0000107 NCBI chr 4:35,951,005...35,956,354
Ensembl chr 4:34,984,232...34,991,343 		JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:10,167,091...10,177,719
Ensembl chr 7:9,516,429...9,527,061 		JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO
IEA		 (PMID:10839360)
GO_REF:0000107		 RGD
Ensembl		 PMID:10839360 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803|MGI:2150426|MGI:97486 (PMID:10471511), (PMID:15817220), (PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1347464|MGI:1859647 (PMID:11062007), (PMID:16691564)
GO_REF:0000107		 RGD
Ensembl		 PMID:11062007 PMID:16691564 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:1345138 (PMID:15809037)
GO_REF:0000107		 RGD
Ensembl		 PMID:15809037 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (PMID:15328018) RGD PMID:15328018 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2153351 (PMID:12194867)
GO_REF:0000107		 RGD
Ensembl		 PMID:12194867 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:10934262) RGD PMID:10934262 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1099809|MGI:2388671 (PMID:16691564) RGD PMID:16691564 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within ISO
IEA		 MGI:2448634 (PMID:12642503)
GO_REF:0000107		 RGD
Ensembl		 PMID:12642503 GO_REF:0000107 NCBI chr10:19,310,466...19,314,405
Ensembl chr10:18,806,308...18,810,231 		JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO
IEA		 MGI:98958 (PMID:18991062)
GO_REF:0000107		 RGD
Ensembl		 PMID:18991062 GO_REF:0000107 NCBI chr 3:85,739,162...85,772,168
Ensembl chr 3:65,332,277...65,365,208 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO
IEA		 MGI:108474 (PMID:16495441)
GO_REF:0000107		 RGD
Ensembl		 PMID:16495441 GO_REF:0000107 NCBI chr15:43,596,962...43,664,047
Ensembl chr15:39,421,355...39,488,369 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO
IEA		 MGI:108476 (PMID:16495441)
GO_REF:0000107		 RGD
Ensembl		 PMID:16495441 GO_REF:0000107 NCBI chr 7:71,939,916...71,971,685
Ensembl chr 7:70,055,068...70,086,776 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:4818492 (PMID:20652952)
GO_REF:0000107		 RGD
Ensembl		 PMID:20652952 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2153826|MGI:2181200 (PMID:11135239), (PMID:21553382)
GO_REF:0000107		 RGD
Ensembl		 PMID:11135239 PMID:21553382 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1857634 (PMID:15829521), (PMID:15996652)
GO_REF:0000107		 RGD
Ensembl		 PMID:15829521 PMID:15996652 GO_REF:0000107 NCBI chr 9:97,957,304...97,959,883
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,185,489...2,204,191
Ensembl chr14:2,042,434...2,051,814 		JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:107160|MGI:2154542 (PMID:11748138), (PMID:15363417)
GO_REF:0000107		 RGD
Ensembl		 PMID:11748138 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,749,284...195,758,347
Ensembl chr 1:186,319,110...186,326,771 		JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:107159|MGI:1857577 (PMID:15363417), (PMID:9435283)
GO_REF:0000107		 RGD
Ensembl		 PMID:9435283 PMID:15363417 GO_REF:0000107 NCBI chr 1:195,743,411...195,745,375
Ensembl chr 1:186,313,063...186,315,201 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (PMID:15367676) RGD PMID:15367676 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO
IEA		 MGI:1916289 (PMID:16955138)
GO_REF:0000107		 RGD
Ensembl		 PMID:16955138 GO_REF:0000107 NCBI chr13:35,025,160...35,052,937
Ensembl chr13:32,473,742...32,494,923 		JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO
IEA		 MGI:2181699 (PMID:10742111)
GO_REF:0000107		 RGD
Ensembl		 PMID:10742111 GO_REF:0000107 NCBI chr17:80,213,139...80,410,633
Ensembl chr17:75,304,008...75,501,510 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2680653 (PMID:11226272)		 Ensembl
RGD		 PMID:11226272 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:198,291,766...198,624,669 		JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 acts_upstream_of_or_within ISO MGI:3618993 (PMID:16437162) RGD PMID:16437162 NCBI chr 5:139,560,366...139,612,212
Ensembl chr 5:134,275,934...134,326,932 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA		 MGI:1856419 (PMID:16325169)
GO_REF:0000107		 RGD
Ensembl		 PMID:16325169 GO_REF:0000107 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within ISO
IEA		 MGI:1857036 (PMID:11718241), (PMID:14724386)
GO_REF:0000107		 RGD
Ensembl		 PMID:11718241 PMID:14724386 GO_REF:0000107 NCBI chr10:45,776,907...45,835,473
Ensembl chr10:45,278,737...45,335,340 		JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1856555 (PMID:7493015)		 GO_Central
RGD		 PMID:7493015 GO_REF:0000033 NCBI chr 8:89,967,351...90,122,219
Ensembl chr 8:81,087,139...81,239,292 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:15389316), (PMID:5795329)
GO_REF:0000107		 RGD
Ensembl		 PMID:5795329 PMID:11753415 PMID:15389316 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Neurog1 neurogenin 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107
MGI:2183171 (PMID:16145671)		 RGD
Ensembl		 PMID:16145671 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Ntn1 netrin 1 acts_upstream_of_or_within ISO MGI:2137018 (PMID:17616930) RGD PMID:17616930 NCBI chr10:53,398,852...53,597,595
Ensembl chr10:52,899,934...53,085,326 		JBrowse link
G Otop1 otopetrin 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1856638|MGI:2655558 (PMID:12651873)		 GO_Central
Ensembl
RGD		 PMID:12651873 GO_REF:0000033 GO_REF:0000107 NCBI chr14:76,717,330...76,744,785
Ensembl chr14:72,503,592...72,532,497 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2136272|MGI:97451 (PMID:10225993)
GO_REF:0000107		 RGD
Ensembl		 PMID:10225993 GO_REF:0000107 NCBI chr14:100,283,406...100,290,421
Ensembl chr14:96,082,151...96,089,086 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:97450 (PMID:10225993) RGD PMID:10225993 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
UniProtKB:Q00288 (PMID:20727173), (PMID:8951055)
MGI:109344|MGI:1857673 (PMID:15242798), (PMID:16916509)		 UniProt
RGD		 PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISO
IEA		 UniProtKB:P32114 (PMID:20727173)
GO_REF:0000107		 RGD
Ensembl		 PMID:20727173 GO_REF:0000107 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857425 (PMID:12585968)
GO_REF:0000107		 RGD
Ensembl		 PMID:12585968 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,390,205...34,392,797 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:98218 (PMID:9729491)
GO_REF:0000107		 RGD
Ensembl		 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within ISO
IEA		 MGI:2679316 (PMID:14534255)
GO_REF:0000107		 RGD
Ensembl		 PMID:14534255 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:42,837,109...43,016,917 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:18606138) RGD PMID:18606138 NCBI chr17:12,124,749...12,300,044
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:106034 (PMID:15788460)
GO_REF:0000107		 RGD
Ensembl		 PMID:15788460 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:19936227)
GO_REF:0000107		 RGD
Ensembl		 PMID:19936227 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Sobp sine oculis binding protein homolog acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:1856614 (PMID:16962269)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:16962269 GO_REF:0000033 GO_REF:0000107 NCBI chr20:48,064,445...48,243,607
Ensembl chr20:46,482,765...46,663,541 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO
IEA		 MGI:3578633|MGI:99604 (PMID:15809037)
GO_REF:0000107		 RGD
Ensembl		 PMID:15809037 GO_REF:0000107 NCBI chr15:89,106,809...89,111,926
Ensembl chr15:82,692,143...82,698,009 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (PMID:12913075), (PMID:15084464), (PMID:15652707), (PMID:16600992)		 UniProt
RGD		 PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
IEA		 UniProtKB:Q60707 (PMID:33795231)
GO_REF:0000107		 RGD
Ensembl		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:21204207)		 UniProt
RGD		 PMID:21204207 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Tmie transmembrane inner ear involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1857053 (PMID:12140191)		 GO_Central
RGD		 PMID:12140191 GO_REF:0000033 NCBI chr 8:119,728,123...119,743,219
Ensembl chr 8:110,850,034...110,864,803 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within ISO MGI:2651858|MGI:2651859 (PMID:14519688) RGD PMID:14519688 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO
IEA		 MGI:2450561 (PMID:12588793), (PMID:1927362)
GO_REF:0000107		 RGD
Ensembl		 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA		 MGI:98956 (PMID:15961523)
GO_REF:0000107		 RGD
Ensembl		 PMID:15961523 GO_REF:0000107 NCBI chr 7:131,817,558...131,821,605
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA		 MGI:98953 (PMID:15961523)
GO_REF:0000107		 RGD
Ensembl		 PMID:15961523 GO_REF:0000107 NCBI chr10:44,533,734...44,577,919
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA		 (PMID:18991062)
GO_REF:0000107		 RGD
Ensembl		 PMID:18991062 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
inner ear receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8b1 ATPase phospholipid transporting 8B1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19478059)		 Ensembl
RGD		 PMID:19478059 GO_REF:0000107 NCBI chr18:60,286,605...60,427,862
Ensembl chr18:58,018,268...58,157,396 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:19416898) RGD PMID:19416898 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:20940229)
GO_REF:0000107		 RGD
Ensembl		 PMID:20940229 GO_REF:0000107 NCBI chr10:88,061,988...88,063,898
Ensembl chr10:87,561,326...87,565,334 		JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 involved_in ISO
IEA		 (PMID:17021187)
GO_REF:0000107		 RGD
Ensembl		 PMID:17021187 GO_REF:0000107 NCBI chr 1:117,404,446...117,517,424
Ensembl chr 1:108,268,776...108,380,917 		JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 involved_in ISO
IEA		 (PMID:17021187)
GO_REF:0000107		 RGD
Ensembl		 PMID:17021187 GO_REF:0000107 NCBI chr10:27,438,127...27,657,680
Ensembl chr10:26,936,551...27,151,251 		JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 involved_in ISO (PMID:17021187) RGD PMID:17021187 NCBI chr 1:117,602,772...117,838,230
Ensembl chr 1:108,296,124...108,698,961 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in ISO
IEA		 (PMID:11276175)
GO_REF:0000107		 RGD
Ensembl		 PMID:11276175 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:17712420)
GO_REF:0000107		 RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO
IEA		 MGI:1856914 (PMID:10575115)
GO_REF:0000107		 RGD
Ensembl		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:110,341,581...110,474,538 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1888513 (PMID:20940229)
GO_REF:0000107		 RGD
Ensembl		 PMID:20940229 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Diaph3 diaphanous-related formin 3 acts_upstream_of_or_within ISO
IEA		 (PMID:23441200)
GO_REF:0000107		 RGD
Ensembl		 PMID:23441200 GO_REF:0000107 NCBI chr15:68,951,992...69,421,623
Ensembl chr15:62,543,375...63,012,975 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:52,539,714...52,554,465
Ensembl chr18:52,539,917...52,554,461 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:1856716|MGI:1860092|MGI:2155417|MGI:2155420|MGI:2155421|MGI:2155422|MGI:2155423 (PMID:9435277), (PMID:9680294)
GO_REF:0000107		 RGD
Ensembl		 PMID:9435277 PMID:9680294 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO
IEA		 MGI:1857425 (PMID:9256502), (PMID:9735355)
GO_REF:0000107		 RGD
Ensembl		 PMID:9256502 PMID:9735355 GO_REF:0000107 NCBI chr18:34,641,191...34,643,783
Ensembl chr18:34,390,205...34,392,797 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO
IEA		 MGI:1856575|MGI:2450561 (PMID:12588793), (PMID:1442008), (PMID:1763621), (PMID:1927362)
GO_REF:0000107		 RGD
Ensembl		 PMID:1442008 PMID:1763621 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
inner ear receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3527179 (PMID:17567809) RGD PMID:17567809 NCBI chr 2:13,067,149...13,647,407
Ensembl chr 2:11,331,442...11,911,688 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:21071598) RGD PMID:21071598 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO
IEA		 MGI:2154548 (PMID:18339676)
GO_REF:0000107		 RGD
Ensembl		 PMID:18339676 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO
IEA		 MGI:3574034|MGI:4829945 (PMID:21246654)
GO_REF:0000107		 RGD
Ensembl		 PMID:21246654 GO_REF:0000107 NCBI chr 4:153,890,310...153,998,078
Ensembl chr 4:153,890,206...153,993,451 		JBrowse link
G Clic5 chloride intracellular channel 5 involved_in ISO (PMID:24285636) RGD PMID:24285636 NCBI chr 9:24,208,455...24,310,964
Ensembl chr 9:16,710,980...16,813,427 		JBrowse link
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within ISO
IEA		 MGI:1915838 (PMID:18606138)
GO_REF:0000107		 RGD
Ensembl		 PMID:18606138 GO_REF:0000107 NCBI chr 7:72,007,372...72,017,654
Ensembl chr 7:70,122,474...70,132,756 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO
IEA		 MGI:3846573 (PMID:21303848)
GO_REF:0000107		 RGD
Ensembl		 PMID:21303848 GO_REF:0000107 NCBI chr 2:123,855,289...123,984,716
Ensembl chr 2:121,927,942...122,056,707 		JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:20137774)		 GO_Central
Ensembl
RGD		 PMID:20137774 GO_REF:0000033 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO
IEA		 MGI:6281113|MGI:6281114 (PMID:30380417)
GO_REF:0000107		 RGD
Ensembl		 PMID:30380417 GO_REF:0000107 NCBI chr18:34,235,734...34,249,139
Ensembl chr18:33,984,689...33,998,094 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:104876|MGI:1341800 (PMID:21300049)
GO_REF:0000107		 RGD
Ensembl		 PMID:21300049 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO MGI:104853|MGI:1341800 (PMID:21300049) RGD PMID:21300049 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:104853|MGI:104876 (PMID:21300049) RGD PMID:21300049 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:93,095,498...93,100,312 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO
IEA		 MGI:3817268 (PMID:25605782)
GO_REF:0000107		 RGD
Ensembl		 PMID:25605782 GO_REF:0000107 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift27 intraflagellar transport 27 acts_upstream_of_or_within ISO MGI:4461616 (PMID:25605782) RGD PMID:25605782 NCBI chr 7:111,619,145...111,635,129
Ensembl chr 7:109,738,622...109,754,416 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1932522|MGI:2135272|MGI:3710185 (PMID:18066062) RGD PMID:18066062 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2386464 (PMID:18066062) RGD PMID:18066062 NCBI chr10:38,226,388...38,263,062
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within ISO (PMID:35727972) RGD PMID:35727972 NCBI chr18:52,539,714...52,554,465
Ensembl chr18:52,539,917...52,554,461 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:4887578 (PMID:21045211)
GO_REF:0000107		 RGD
Ensembl		 PMID:21045211 GO_REF:0000107 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:2155422 (PMID:18339676)
GO_REF:0000107		 RGD
Ensembl		 PMID:18339676 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Otog otogelin acts_upstream_of_or_within ISO
IEA		 (PMID:31776257)
GO_REF:0000107		 RGD
Ensembl		 PMID:31776257 GO_REF:0000107 NCBI chr 1:96,746,336...96,815,416
Ensembl chr 1:96,746,336...96,815,415 		JBrowse link
G Otogl otogelin-like acts_upstream_of_or_within ISO
IEA		 (PMID:31776257)
GO_REF:0000107		 RGD
Ensembl		 PMID:31776257 GO_REF:0000107 NCBI chr 7:43,065,800...43,211,400
Ensembl chr 7:43,067,644...43,223,592 		JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO
IEA		 MGI:1856394 (PMID:18339676)
GO_REF:0000107		 RGD
Ensembl		 PMID:18339676 GO_REF:0000107 NCBI chr20:13,996,383...15,495,206
Ensembl chr20:13,963,565...15,494,719 		JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:5056373 (PMID:21515572) RGD PMID:21515572 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
G Sdc4 syndecan 4 acts_upstream_of_or_within ISO
IEA		 MGI:2135272 (PMID:23760952)
GO_REF:0000107		 RGD
Ensembl		 PMID:23760952 GO_REF:0000107 NCBI chr 3:173,574,239...173,592,923
Ensembl chr 3:153,154,896...153,173,580 		JBrowse link
G Strc stereocilin acts_upstream_of_or_within ISO
IEA		 (PMID:31776257)
GO_REF:0000107		 RGD
Ensembl		 PMID:31776257 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO
IEA		 MGI:3836913 (PMID:25605782)
GO_REF:0000107		 RGD
Ensembl		 PMID:25605782 GO_REF:0000107 NCBI chr 6:126,760,263...126,832,619
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO
IEA		 (PMID:10575115)
GO_REF:0000107		 RGD
Ensembl		 PMID:10575115 GO_REF:0000107 NCBI chr 6:116,072,321...116,206,009
Ensembl chr 6:110,341,581...110,474,538 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS
ISO		 GO_REF:0000024
(PMID:32127020)		 UniProt
RGD		 PMID:32127020 GO_REF:0000024 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO
IEA		 MGI:5140723 (PMID:25605782)
GO_REF:0000107		 RGD
Ensembl		 PMID:25605782 GO_REF:0000107 NCBI chr 6:123,927,657...124,025,354
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
G Ush1c USH1 protein network component harmonin acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:3757683 (PMID:18339676)
GO_REF:0000033		 RGD
GO_Central		 PMID:18339676 GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO
IEA		 MGI:1856575 (PMID:18339676)
GO_REF:0000107		 RGD
Ensembl		 PMID:18339676 GO_REF:0000107 NCBI chr10:101,055,923...101,062,753
Ensembl chr10:100,557,629...100,563,590 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1349164|MGI:1857642|MGI:98715 (PMID:18066062), (PMID:18606138), (PMID:23760952)
GO_REF:0000107		 RGD
Ensembl		 PMID:18066062 PMID:18606138 PMID:23760952 GO_REF:0000107 NCBI chr13:86,995,124...87,021,770
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Whrn whirlin involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12124769), (PMID:17326148)		 UniProt
Ensembl
RGD		 PMID:12124769 PMID:17326148 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:17064680
GO_REF:0000107
(PMID:17064680)		 Ensembl
RGD		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:103223 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (PMID:7550230)
GO_REF:0000107		 RGD
Ensembl		 PMID:7550230 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9437321) RGD PMID:9437321 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:106918|MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
lateral semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:17395647)
GO_REF:0000107		 RGD
Ensembl		 PMID:17395647 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 (PMID:27687499)
GO_REF:0000107		 RGD
Ensembl		 PMID:27687499 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 acts_upstream_of_or_within ISO
IEA		 MGI:3045749|MGI:5796183 (PMID:26218911)
GO_REF:0000107		 RGD
Ensembl		 PMID:26218911 GO_REF:0000107 NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606 		JBrowse link
G Casp6 caspase 6 IEP RGD PMID:15161922 RGD:2301319 NCBI chr 2:221,140,287...221,152,727
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
G Cdk2 cyclin dependent kinase 2 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:1,714,392...1,721,964
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:64,771,453...64,774,891
Ensembl chr 7:62,883,105...62,942,403 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:2653120 (PMID:19754878)
GO_REF:0000107		 RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA		 MGI:1858025|MGI:2653028|MGI:88516 (PMID:11687536), (PMID:16439475), (PMID:9023351)
GO_REF:0000033		 RGD
GO_Central		 PMID:9023351 PMID:11687536 PMID:16439475 PMID:8187157 GO_REF:0000033, RGD:1600991 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO
IEA		 MGI:88515 (PMID:16439475)
GO_REF:0000107		 RGD
Ensembl		 PMID:16439475 GO_REF:0000107 NCBI chr 8:59,989,885...59,995,532
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Cryba1 crystallin, beta A1 involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2753045 GO_REF:0000033, RGD:1298814 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Cryba2 crystallin, beta A2 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:4950379 (PMID:21212184)		 GO_Central
Ensembl
RGD		 PMID:21212184 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:76,447,250...76,457,968
Ensembl chr 9:76,447,251...76,450,460 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221 		JBrowse link
G Crybb1 crystallin, beta B1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:44,369,734...44,383,344
Ensembl chr12:44,369,735...44,383,344 		JBrowse link
G Crybb2 crystallin, beta B2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671 		JBrowse link
G Crybb3 crystallin, beta B3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:43,557,103...43,562,120
Ensembl chr12:43,557,103...43,562,120 		JBrowse link
G Crybg3 crystallin beta-gamma domain containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:40,749,198...40,861,753
Ensembl chr11:40,749,214...40,861,752 		JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA		 MGI:1856493|MGI:1857595 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8034315)
GO_REF:0000033		 RGD
GO_Central		 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:73,975,914...74,006,614
Ensembl chr 9:66,482,176...66,509,896 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA		 MGI:1857597|MGI:3777015 (PMID:12426373), (PMID:18172107), (PMID:8626090)
GO_REF:0000033		 RGD
GO_Central		 PMID:8626090 PMID:12426373 PMID:18172107 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:73,955,204...73,957,264
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Crygc crystallin, gamma C involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:73,945,332...73,947,367
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in		 IEP
IEA
ISO
IBA		 GO_REF:0000107
MGI:1858026|MGI:3762620 (PMID:10704279), (PMID:17652744)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:10704279 PMID:17652744 PMID:2338125 GO_REF:0000033 GO_REF:0000107, RGD:2303725 NCBI chr 9:73,935,798...73,937,409
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Cryge crystallin, gamma E involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:66,429,924...66,432,521
Ensembl chr 9:66,429,924...66,433,274 		JBrowse link
G Crygf crystallin, gamma F involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:67,448,265...67,450,429
Ensembl chr 9:67,447,954...67,450,429 		JBrowse link
G Crygn crystallin, gamma N involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,286,475...11,294,002
Ensembl chr 4:10,394,020...10,401,543 		JBrowse link
G Crygs crystallin, gamma S involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1861635 (PMID:6877261), (PMID:8034315)		 GO_Central
Ensembl
RGD		 PMID:6877261 PMID:8034315 GO_REF:0000033 GO_REF:0000107 NCBI chr11:78,207,170...78,212,273
Ensembl chr11:78,207,170...78,212,273 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter acts_upstream_of_or_within ISO MGI:2388945 (PMID:21897743) RGD PMID:21897743 NCBI chr10:58,300,069...58,315,725
Ensembl chr10:57,801,456...57,817,120 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:2680670 (PMID:14645510)
GO_REF:0000107		 RGD
Ensembl		 PMID:14645510 GO_REF:0000107 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:68,911,883...69,102,689 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:17064680
GO_REF:0000107
(PMID:17064680)
GO_REF:0000024
(PMID:27218149)		 Ensembl
RGD
UniProt		 PMID:17064680 PMID:27218149 PMID:17064680 GO_REF:0000024 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3045749|MGI:3768912 (PMID:23136392)
GO_REF:0000107		 RGD
Ensembl		 PMID:23136392 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2181200 (PMID:19623612)
GO_REF:0000107		 RGD
Ensembl		 PMID:19623612 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (PMID:9620080) RGD PMID:9620080 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:1857499 (PMID:6877261) RGD PMID:6877261 NCBI chr 2:187,179,668...187,181,284
Ensembl chr 2:184,490,840...184,492,456 		JBrowse link
G Gje1 gap junction protein, epsilon 1 acts_upstream_of_or_within ISO
IEA		 MGI:3529958 (PMID:18385072)
GO_REF:0000107		 RGD
Ensembl		 PMID:18385072 GO_REF:0000107 NCBI chr 1:10,905,890...10,911,800
Ensembl chr 1:9,086,348...9,088,138 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1862040 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8812411)
GO_REF:0000107		 RGD
Ensembl		 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 GO_REF:0000107 NCBI chr 1:102,974,188...102,980,358
Ensembl chr 1:93,837,597...93,843,769 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO MGI:2148635|MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:10603348), (PMID:12835653) RGD PMID:10383433 PMID:10603348 PMID:12835653 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11724781)		 UniProt
Ensembl
RGD		 PMID:11724781 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mip major intrinsic protein of lens fiber acts_upstream_of_or_within ISO MGI:1857105 (PMID:7333462) RGD PMID:7333462 NCBI chr 7:643,502...653,121
Ensembl chr 7:647,315...654,400 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:15716406)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nhs NHS actin remodeling regulator involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1861111 (PMID:8282045)		 GO_Central
Ensembl
RGD		 PMID:8282045 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:32,553,300...32,892,961
Ensembl chr  X:32,552,026...32,889,992 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:2156742 (PMID:6877261)
GO_REF:0000107		 RGD
Ensembl		 PMID:6877261 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3722688 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,905,734...43,004,740
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within ISO MGI:3722688 (PMID:19412548) RGD PMID:19412548 NCBI chr12:202,481...345,596
Ensembl chr12:255,313...345,596 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19007884), (PMID:19334279)		 UniProt
Ensembl
RGD		 PMID:19007884 PMID:19334279 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:254,942,550...254,955,325
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:8812486)
GO_REF:0000107		 RGD
Ensembl		 PMID:8812486 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Pygo2 pygopus family PHD finger 2 acts_upstream_of_or_within ISO
IEA		 MGI:3712856 (PMID:17425782)
GO_REF:0000107		 RGD
Ensembl		 PMID:17425782 GO_REF:0000107 NCBI chr 2:174,849,670...174,854,758
Ensembl chr 2:174,849,936...174,854,758 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:11139622) RGD PMID:11139622 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Six5 SIX homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:2148689|MGI:2148692 (PMID:10802667), (PMID:10802668)
GO_REF:0000107		 RGD
Ensembl		 PMID:10802667 PMID:10802668 GO_REF:0000107 NCBI chr 1:87,868,859...87,873,929
Ensembl chr 1:78,741,367...78,745,890 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:23543054)
GO_REF:0000107		 RGD
Ensembl		 PMID:23543054 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO
IEA		 MGI:1856684 (PMID:24239381)
GO_REF:0000107		 RGD
Ensembl		 PMID:24239381 GO_REF:0000107 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA		 MGI:4440463 (PMID:20159594)
GO_REF:0000107		 RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:11641223)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641223 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:11641223)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641223 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:15037121)		 GO_Central
Ensembl
RGD		 PMID:15037121 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:131,195,087...131,252,668
Ensembl chr 3:131,195,087...131,229,337 		JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO MGI:2671074 (PMID:15037121), (PMID:17065509) RGD PMID:15037121 PMID:17065509 NCBI chr 8:112,885,087...112,942,246
Ensembl chr 8:104,006,226...104,063,399 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:3777015 (PMID:18172107) RGD PMID:18172107 NCBI chr 9:73,955,204...73,957,264
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679|MGI:3045749|MGI:95524 (PMID:18455718), (PMID:23136392) RGD PMID:18455718 PMID:23136392 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:95523 (PMID:18455718) RGD PMID:18455718 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3045749|MGI:3768912|MGI:97385 (PMID:23136392)
GO_REF:0000107		 RGD
Ensembl		 PMID:23136392 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2386105 (PMID:21118511) RGD PMID:21118511 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tmod1 tropomodulin 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q6NVD9 (PMID:23144950)		 Ensembl
RGD		 PMID:23144950 GO_REF:0000107 NCBI chr 5:65,112,062...65,189,563
Ensembl chr 5:60,338,512...60,393,956 		JBrowse link
G Vim vimentin acts_upstream_of_or_within ISO (PMID:15037121) RGD PMID:15037121 NCBI chr17:81,577,261...81,585,746
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D acts_upstream_of_or_within IDA
IEA
ISO		 GO_REF:0000107
MGI:3762620 (PMID:17652744)		 Ensembl
RGD		 PMID:17652744 PMID:8575616 GO_REF:0000107, RGD:1601018 NCBI chr 9:73,935,798...73,937,409
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 7:8,982,765...8,994,689
Ensembl chr 7:8,332,029...8,343,952 		JBrowse link
G Kdm5b lysine demethylase 5B IEP RGD PMID:24142921 RGD:9587771 NCBI chr13:48,554,367...48,625,721
Ensembl chr13:46,002,542...46,073,872 		JBrowse link
G Maf MAF bZIP transcription factor involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:12835653)		 GO_Central
RGD		 PMID:10383433 PMID:12835653 GO_REF:0000033 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in IEA
ISO		 GO_REF:0000107
(PMID:20181838)		 Ensembl
RGD		 PMID:20181838 GO_REF:0000107 NCBI chr14:83,850,894...83,934,263
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 acts_upstream_of_or_within ISO
IEA		 MGI:1100860 (PMID:23136392)
GO_REF:0000107		 RGD
Ensembl		 PMID:23136392 GO_REF:0000107 NCBI chr 1:141,526,192...141,913,575
Ensembl chr 1:132,132,849...132,503,286 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISO
IEA		 (PMID:19007884)
GO_REF:0000107		 RGD
Ensembl		 PMID:19007884 GO_REF:0000107 NCBI chr 1:254,942,550...254,955,325
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Plaat1 phospholipase A and acyltransferase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:71,517,492...71,537,142
Ensembl chr11:71,517,493...71,527,020 		JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:33854238)		 UniProt
RGD		 PMID:33854238 GO_REF:0000024 NCBI chr 1:214,211,755...214,245,551
Ensembl chr 1:204,782,729...204,817,667 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:12072567) RGD PMID:12072567 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Skil SKI-like proto-oncogene acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 2:114,175,534...114,203,663
Ensembl chr 2:112,247,051...112,275,080 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 IEP RGD PMID:16043861 RGD:2315033 NCBI chr 2:136,532,912...136,668,560
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO
IBA
IEA
ISS		 (PMID:21436445)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:21436445 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 involved_in ISO (PMID:15572692) RGD PMID:15572692 NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:10096021), (PMID:10885750), (PMID:11806972)		 UniProt
Ensembl
RGD		 PMID:10096021 PMID:10885750 PMID:11806972 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3665275|MGI:3777403 (PMID:16799046), (PMID:18056999) RGD PMID:16799046 PMID:18056999 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:12426373), (PMID:8626090) RGD PMID:8626090 PMID:12426373 NCBI chr 9:73,955,204...73,957,264
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Epha2 Eph receptor A2 involved_in ISO
IEA		 (PMID:18948590)
GO_REF:0000107		 RGD
Ensembl		 PMID:18948590 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:11850194)
GO_REF:0000107
(PMID:10080188)		 RGD
Ensembl		 PMID:10080188 PMID:11850194 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO
IEA		 MGI:1856684 (PMID:24239381)
GO_REF:0000107		 RGD
Ensembl		 PMID:24239381 GO_REF:0000107 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:9851982)
GO_REF:0000107		 RGD
Ensembl		 PMID:9851982 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (PMID:17140559) RGD PMID:17140559 NCBI chr13:80,653,602...80,796,279
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:3693322 (PMID:17066077) RGD PMID:17066077 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (PMID:17140559) RGD PMID:17140559 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:10571739) RGD PMID:10571739 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO
IEA		 MGI:4359826 (PMID:19365570)
GO_REF:0000107		 RGD
Ensembl		 PMID:19365570 GO_REF:0000107 NCBI chr 2:213,209,907...213,323,305
Ensembl chr 2:210,525,260...210,638,798 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3696062 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1858023|MGI:3665274|MGI:3665275 (PMID:16799046), (PMID:8812430) RGD PMID:8812430 PMID:16799046 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567|MGI:3045749 (PMID:16102745)
GO_REF:0000107		 RGD
Ensembl		 PMID:16102745 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:11290300) RGD PMID:11290300 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Lctl lactase-like involved_in ISO
IEA		 (PMID:29425878)
GO_REF:0000107		 RGD
Ensembl		 PMID:29425878 GO_REF:0000107 NCBI chr 8:64,618,356...64,654,851
Ensembl chr 8:64,618,350...64,639,357 		JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:3029063 (PMID:14713950)
GO_REF:0000107		 RGD
Ensembl		 PMID:14713950 GO_REF:0000107 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO
IEA		 MGI:3605480 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO
IEA		 MGI:3605481 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19334279)		 UniProt
Ensembl
RGD		 PMID:19334279 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:254,942,550...254,955,325
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:10080188)
GO_REF:0000107		 RGD
Ensembl		 PMID:10080188 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:2137412 (PMID:9512512) RGD PMID:9512512 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:21436445)
GO_REF:0000033
GO_REF:0000107		 UniProt
RGD
GO_Central
Ensembl		 PMID:21436445 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:18224708), (PMID:9918694) RGD PMID:9918694 PMID:18224708 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3521833 (PMID:15569927)
GO_REF:0000107		 RGD
Ensembl		 PMID:15569927 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:11850194)
GO_REF:0000107		 RGD
Ensembl		 PMID:11850194 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857637 (PMID:8152482)
GO_REF:0000107		 RGD
Ensembl		 PMID:8152482 GO_REF:0000107 NCBI chr17:22,660,799...22,666,687
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA
ISO		 GO_REF:0000107
MGI:2687362 (PMID:19185569)		 Ensembl
RGD		 PMID:19185569 GO_REF:0000107 NCBI chr19:47,137,360...47,207,961
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:3785162 (PMID:27959908) RGD PMID:27959908 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:20,698,764...20,763,715 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:10471511) RGD PMID:10471511 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 acts_upstream_of_or_within ISO MGI:3775095 (PMID:18219393) RGD PMID:18219393 NCBI chr 1:23,991,431...24,235,132
Ensembl chr 1:22,172,275...22,415,976 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3574787 (PMID:15630379)
GO_REF:0000107		 RGD
Ensembl		 PMID:15630379 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gsc goosecoid homeobox involved_in ISO
IEA		 (PMID:14973294)
GO_REF:0000107		 RGD
Ensembl		 PMID:14973294 GO_REF:0000107 NCBI chr 6:129,152,836...129,154,875
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA		 MGI:102778|MGI:1857530|MGI:2385711 (PMID:15634706), (PMID:15861402), (PMID:16221728)
GO_REF:0000107		 RGD
Ensembl		 PMID:15634706 PMID:15861402 PMID:16221728 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:7,315,495...7,323,952 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO
IEA		 MGI:1916289 (PMID:16955138)
GO_REF:0000107		 RGD
Ensembl		 PMID:16955138 GO_REF:0000107 NCBI chr13:35,025,160...35,052,937
Ensembl chr13:32,473,742...32,494,923 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766 (PMID:16330189) RGD PMID:16330189 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (PMID:17523175) RGD PMID:17523175 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:17712420)
GO_REF:0000107		 RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1931319 (PMID:14973294)
GO_REF:0000107		 RGD
Ensembl		 PMID:14973294 GO_REF:0000107 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nog noggin involved_in IEA
ISO		 GO_REF:0000107
(PMID:10080184)		 Ensembl
RGD		 PMID:10080184 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
UniProtKB:Q91ZD1 (PMID:19389375)		 UniProt
Ensembl
RGD		 PMID:19389375 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19389375)		 UniProt
Ensembl
RGD		 PMID:19389375 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO
IEA		 MGI:3626341 (PMID:16571658)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571658 GO_REF:0000107 NCBI chr 3:81,982,669...82,002,028
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857640|MGI:98218 (PMID:7758948), (PMID:9729491)
GO_REF:0000107		 RGD
Ensembl		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr13:78,136,783...78,205,379
Ensembl chr13:75,601,706...75,670,866 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:34,530,331...34,566,284
Ensembl chr 3:14,094,004...14,168,535 		JBrowse link
G Rpl38 ribosomal protein L38 acts_upstream_of_or_within ISO MGI:1861228 (PMID:21062742) RGD PMID:21062742 NCBI chr10:99,701,330...99,705,004
Ensembl chr10:99,701,362...99,705,004
Ensembl chr14:99,701,362...99,705,004
Ensembl chr 3:99,701,362...99,705,004
Ensembl chr 2:99,701,362...99,705,004
Ensembl chr16:99,701,362...99,705,004 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:2655195 (PMID:12874121)
GO_REF:0000107		 RGD
Ensembl		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:96174 (PMID:15634706)
GO_REF:0000107		 RGD
Ensembl		 PMID:15634706 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:2179190|MGI:2179191|MGI:3619149 (PMID:15652707), (PMID:16600992), (PMID:20501333)		 UniProt
RGD		 PMID:15652707 PMID:16600992 PMID:20501333 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO MGI:3721421 (PMID:17586487) RGD PMID:17586487 NCBI chr18:77,376,399...77,452,815
Ensembl chr18:77,377,394...77,453,509 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA		 (PMID:15976303)
GO_REF:0000107		 RGD
Ensembl		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:2149672 (PMID:16038893)
GO_REF:0000107		 RGD
Ensembl		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21875655)		 UniProt
Ensembl
RGD		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr19:46,390,958...46,394,599
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
negative regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:3044907 (PMID:16495313) RGD PMID:16495313 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17117437) RGD PMID:17117437 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:104876|MGI:1341800|MGI:2149672 (PMID:11023859), (PMID:11425898), (PMID:21300049)
GO_REF:0000107		 RGD
Ensembl		 PMID:11023859 PMID:11425898 PMID:21300049 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO MGI:104853|MGI:1341800|MGI:2149674 (PMID:11425898), (PMID:21300049) RGD PMID:11425898 PMID:21300049 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3044585 (PMID:25535395)
GO_REF:0000107		 RGD
Ensembl		 PMID:25535395 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
negative regulation of inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in ISO
IEA		 (PMID:12208538)
GO_REF:0000107		 RGD
Ensembl		 PMID:12208538 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:12208538) RGD PMID:12208538 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:16199865
GO_REF:0000107
(PMID:10652278), (PMID:10890982), (PMID:16199865)		 Ensembl
RGD		 PMID:10652278 PMID:10890982 PMID:16199865 PMID:16199865 GO_REF:0000107, RGD:10047273 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Spred1 sprouty-related, EVH1 domain containing 1 involved_in ISO
IEA		 (PMID:29501879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29501879 GO_REF:0000107 NCBI chr 3:124,437,230...124,504,358
Ensembl chr 3:103,983,072...104,049,718 		JBrowse link
G Spred2 sprouty-related, EVH1 domain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29501879)		 UniProt
RGD		 PMID:29501879 GO_REF:0000024 NCBI chr14:98,350,577...98,452,143
Ensembl chr14:94,148,837...94,249,162 		JBrowse link
G Spred3 sprouty-related, EVH1 domain containing 3 involved_in ISO (PMID:29501879) RGD PMID:29501879 NCBI chr 1:93,586,259...93,597,692
Ensembl chr 1:84,459,314...84,470,249 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in ISO
IEA		 (PMID:29501879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29501879 GO_REF:0000107 NCBI chr 2:122,484,995...122,490,008
Ensembl chr 2:120,556,706...120,566,189 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in ISO
IEA		 (PMID:29501879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29501879 GO_REF:0000107 NCBI chr15:89,106,809...89,111,926
Ensembl chr15:82,692,143...82,698,009 		JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857430 (PMID:10321489) RGD PMID:10321489 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA		 MGI:3054837 (PMID:15363390)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363390 GO_REF:0000107 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Tmem215 transmembrane protein 215 acts_upstream_of_or_within ISO (PMID:30370660) RGD PMID:30370660 NCBI chr 5:55,612,568...55,615,828
Ensembl chr 5:55,612,568...55,615,828 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 involved_in ISO
IEA		 (PMID:25622036)
GO_REF:0000107		 RGD
Ensembl		 PMID:25622036 GO_REF:0000107 NCBI chr 5:158,932,096...158,937,281
Ensembl chr 5:158,932,794...158,937,324 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21441919)
GO_REF:0000107
GO_REF:0000002
MGI:2159015 (PMID:21441919)		 RGD
Ensembl
InterPro		 PMID:21441919 GO_REF:0000002 GO_REF:0000107 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275 		JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:35,622,267...35,731,904
Ensembl chr 7:33,735,871...33,843,295 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:156,367,582...156,464,085
Ensembl chr  X:151,216,507...151,286,775 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:47,708,157...47,807,389
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
G Bsg basigin involved_in ISS
ISO		 GO_REF:0000024
(PMID:10967074), (PMID:11273674), (PMID:11853760)		 UniProt
RGD		 PMID:10967074 PMID:11273674 PMID:11853760 GO_REF:0000024 NCBI chr 7:10,643,788...10,651,005
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:72,116,265...72,134,023
Ensembl chr 4:71,149,669...71,167,379 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:20589906 RGD:405650605 NCBI chr 6:110,852,188...110,855,054
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Gpm6a glycoprotein m6a involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18776950)		 UniProt
Ensembl
RGD		 PMID:18776950 GO_REF:0000024 GO_REF:0000107 NCBI chr16:43,374,385...43,706,461
Ensembl chr16:36,641,284...36,973,475 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:15716406)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Per1 period circadian regulator 1 IEP RGD PMID:20589906 RGD:405650605 NCBI chr10:54,299,002...54,313,804
Ensembl chr10:53,805,535...53,814,431 		JBrowse link
G Per2 period circadian regulator 2 IEP RGD PMID:20589906 RGD:405650605 NCBI chr 9:99,454,828...99,497,069
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:64,550,109...64,658,123
Ensembl chr10:64,550,177...64,654,759 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:110,348,447...110,388,499
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:104,786,172...104,798,049
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:25,881,557...25,936,837
Ensembl chr 7:23,994,217...24,048,079 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 4:11,441,142...11,472,781
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
IEA		 (PMID:9217007)
GO_REF:0000107		 RGD
Ensembl		 PMID:9217007 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
neuromast hair cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,907,737...3,923,911
Ensembl chr20:3,903,099...3,919,215 		JBrowse link
nose development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in ISO
IEA		 (PMID:14623956)
GO_REF:0000107		 RGD
Ensembl		 PMID:14623956 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:15300250)
GO_REF:0000107
MGI:3588650 (PMID:16207732)		 RGD
Ensembl		 PMID:15300250 PMID:16207732 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Gng8 G protein subunit gamma 8 acts_upstream_of_or_within ISO
IEA		 MGI:5584308 (PMID:23836683)
GO_REF:0000107		 RGD
Ensembl		 PMID:23836683 GO_REF:0000107 NCBI chr 1:86,692,609...86,696,463
Ensembl chr 1:77,564,515...77,568,371 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931124 (PMID:9620767)
GO_REF:0000107		 RGD
Ensembl		 PMID:9620767 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Msx1 msh homeobox 1 involved_in ISO (PMID:7914451) RGD PMID:7914451 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA		 (PMID:17473173)
GO_REF:0000107		 RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in ISO
IEA		 (PMID:28067909), (PMID:28067911)
GO_REF:0000107		 RGD
Ensembl		 PMID:28067909 PMID:28067911 GO_REF:0000107 NCBI chr 9:118,690,050...118,837,281
Ensembl chr 9:111,247,702...111,349,665 		JBrowse link
nose morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
olfactory pit development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:3512079 (PMID:17207476)
GO_REF:0000107		 RGD
Ensembl		 PMID:17207476 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857470 (PMID:9108377)
GO_REF:0000107		 RGD
Ensembl		 PMID:9108377 GO_REF:0000107 NCBI chr 7:23,790,642...23,793,509
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:1857789 (PMID:12533617)
GO_REF:0000107		 RGD
Ensembl		 PMID:12533617 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:34,999,139...35,003,407 		JBrowse link
olfactory placode formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (PMID:17140559) RGD PMID:17140559 NCBI chr13:80,653,602...80,796,279
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:19027001)
GO_REF:0000107		 RGD
Ensembl		 PMID:19027001 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:19027001) RGD PMID:19027001 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (PMID:17140559) RGD PMID:17140559 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (PMID:23129809) RGD PMID:23129809 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16611695 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:1353450 (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16611695 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:11458394) RGD PMID:11458394 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
otic vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in IEA
ISO		 GO_REF:0000107
(PMID:9119111)		 Ensembl
RGD		 PMID:9119111 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780 (PMID:22513373) RGD PMID:22513373 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2181200 (PMID:11135239)
GO_REF:0000107		 RGD
Ensembl		 PMID:11135239 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Get1 guided entry of tail-anchored proteins factor 1 acts_upstream_of_or_within ISO MGI:5911419|MGI:6117117 (PMID:27458190) RGD PMID:27458190 NCBI chr11:35,438,555...35,460,156
Ensembl chr11:35,445,815...35,459,973 		JBrowse link
G Pax8 paired box 8 involved_in ISO (PMID:15494458) RGD PMID:15494458 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:109344|MGI:2655195 (PMID:16916509), (PMID:22513373)
GO_REF:0000107		 RGD
Ensembl		 PMID:16916509 PMID:22513373 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
IEA		 (PMID:9119111)
GO_REF:0000107		 RGD
Ensembl		 PMID:9119111 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:95517 (PMID:14623822)
GO_REF:0000107		 RGD
Ensembl		 PMID:14623822 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:95517 (PMID:17601531)
GO_REF:0000107		 RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153790 (PMID:9435295) RGD PMID:9435295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1931124 (PMID:9620767)
GO_REF:0000107		 RGD
Ensembl		 PMID:9620767 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1932522|MGI:2385468 (PMID:18377888)		 UniProt
Ensembl
RGD		 PMID:18377888 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,878,006...83,879,174
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:16916509) RGD PMID:16916509 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3046793 (PMID:17074316) RGD PMID:17074316 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
otolith development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO
IEA		 MGI:3612279 (PMID:20577052)
GO_REF:0000107		 RGD
Ensembl		 PMID:20577052 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Nox3 NADPH oxidase 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856606 (PMID:10491954)
GO_REF:0000107		 RGD
Ensembl		 PMID:10491954 GO_REF:0000107 NCBI chr 1:44,238,012...44,302,851
Ensembl chr 1:44,236,992...44,302,851 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,907,737...3,923,911
Ensembl chr20:3,903,099...3,919,215 		JBrowse link
otolith mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Oc90 otoconin 90 involved_in ISO
IEA		 (PMID:21655225), (PMID:24748133)
GO_REF:0000107		 RGD
Ensembl		 PMID:21655225 PMID:24748133 GO_REF:0000107 NCBI chr 7:97,635,890...97,669,303
Ensembl chr 7:97,635,890...97,669,416 		JBrowse link
G Otol1 otolin 1 involved_in ISO
IEA		 (PMID:21655225), (PMID:24748133), (PMID:29076638)
GO_REF:0000107		 RGD
Ensembl		 PMID:21655225 PMID:24748133 PMID:29076638 GO_REF:0000107 NCBI chr 2:154,339,612...154,349,050
Ensembl chr 2:154,339,612...154,349,023 		JBrowse link
otolith mineralization completed early in development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (PMID:20577052) RGD PMID:20577052 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (PMID:5367369) RGD PMID:5367369 NCBI chr17:26,377,549...26,402,869
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within ISO
IEA		 MGI:2443955 (PMID:24086156)
GO_REF:0000107		 RGD
Ensembl		 PMID:24086156 GO_REF:0000107 NCBI chr 4:128,687,723...128,788,219
Ensembl chr 4:127,130,898...127,231,513 		JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within ISO
IEA		 MGI:107935 (PMID:24086156)
GO_REF:0000107		 RGD
Ensembl		 PMID:24086156 GO_REF:0000107 NCBI chr 7:63,701,724...63,751,898
Ensembl chr 7:61,816,342...61,866,481 		JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:4,043,364...4,162,660
Ensembl chr18:3,805,183...3,887,930 		JBrowse link
outer ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:10471511) RGD PMID:10471511 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3574787 (PMID:15630379)
GO_REF:0000107		 RGD
Ensembl		 PMID:15630379 GO_REF:0000107 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1346859 (PMID:18952847)
GO_REF:0000107		 RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:18952847) RGD PMID:18952847 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO
IEA		 MGI:3626341 (PMID:16571658)
GO_REF:0000107		 RGD
Ensembl		 PMID:16571658 GO_REF:0000107 NCBI chr 3:81,982,669...82,002,028
Ensembl chr 3:61,575,447...61,594,347 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:3619149 (PMID:16600992)		 UniProt
RGD		 PMID:16600992 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (PMID:17127413) RGD PMID:17127413 NCBI chr  X:141,159,623...141,165,587
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21875655)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21875655)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18973577)
GO_REF:0000107		 RGD
Ensembl		 PMID:18973577 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
positive regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:11023859), (PMID:19154718)
GO_REF:0000107		 RGD
Ensembl		 PMID:11023859 PMID:19154718 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:12417662)
GO_REF:0000107		 RGD
Ensembl		 PMID:12417662 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
positive regulation of inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3767172 (PMID:21146598)
GO_REF:0000107
(PMID:12208538)		 RGD
Ensembl		 PMID:12208538 PMID:21146598 GO_REF:0000107 NCBI chr 4:95,241,933...95,244,028
Ensembl chr 4:93,912,068...93,914,154 		JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
IEA		 PMID:16199865
(PMID:22527307)
(PMID:10652278), (PMID:16199865)
GO_REF:0000107		 RGD
Ensembl		 PMID:10652278 PMID:16199865 PMID:22527307 PMID:16199865 PMID:22527307 GO_REF:0000107, RGD:10047273, RGD:10047255 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29501879)		 UniProt
Ensembl
RGD		 PMID:29501879 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO
IEA		 (PMID:16162653)
GO_REF:0000107		 RGD
Ensembl		 PMID:16162653 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 involved_in ISO
IEA		 (PMID:25677106)
GO_REF:0000107		 RGD
Ensembl		 PMID:25677106 GO_REF:0000107 NCBI chr20:31,140,993...31,209,126
Ensembl chr20:30,598,168...30,666,939 		JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:221,140,287...221,152,727
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO
IEA		 MGI:2663971 (PMID:12717433)
GO_REF:0000107		 RGD
Ensembl		 PMID:12717433 GO_REF:0000107 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within
involved_in		 ISO MGI:3574771|MGI:3583769 (PMID:18791178)
(PMID:18832390)		 RGD PMID:18791178 PMID:18832390 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:2183917|MGI:3045749 (PMID:17060454)
GO_REF:0000107		 RGD
Ensembl		 PMID:17060454 GO_REF:0000107 NCBI chr 5:75,074,107...75,079,182
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:11120573 RGD:2303744 NCBI chr11:81,513,321...81,575,200 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931047 (PMID:10229225) RGD PMID:10229225 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within ISO
IEA		 MGI:99702 (PMID:15955981)
GO_REF:0000107		 RGD
Ensembl		 PMID:15955981 GO_REF:0000107 NCBI chr20:5,102,334...5,111,615
Ensembl chr20:5,100,480...5,109,264 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1097161 (PMID:15955981)
GO_REF:0000107		 RGD
Ensembl		 PMID:15955981 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO MGI:96683 (PMID:22426483) RGD PMID:22426483 NCBI chr12:12,333,050...12,504,750
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (PMID:16466397) RGD PMID:16466397 NCBI chr11:48,891,813...48,897,732
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO
IEA		 MGI:95558 (PMID:22426483)
GO_REF:0000107		 RGD
Ensembl		 PMID:22426483 GO_REF:0000107 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:24101522) RGD PMID:24101522 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA		 MGI:3054837 (PMID:15363390)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363390 GO_REF:0000107 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:12915475)
GO_REF:0000107
(PMID:15316081), (PMID:16885194)		 RGD
Ensembl		 PMID:12915475 PMID:15316081 PMID:16885194 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within ISO
IEA		 MGI:3761008 (PMID:18216855)
GO_REF:0000107		 RGD
Ensembl		 PMID:18216855 GO_REF:0000107 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (PMID:10097103) RGD PMID:10097103 NCBI chr16:82,821,184...82,837,971
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
posterior lateral line neuromast hair cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmem132e transmembrane protein 132E involved_in ISO
IEA		 UniProtKB:L7VG99 (PMID:25331638)
GO_REF:0000107		 RGD
Ensembl		 PMID:25331638 GO_REF:0000107 NCBI chr10:67,330,863...67,386,790
Ensembl chr10:67,330,751...67,386,789 		JBrowse link
regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:104853|MGI:104876 (PMID:21300049) RGD PMID:21300049 NCBI chr 2:95,003,935...95,006,457
Ensembl chr 2:93,095,498...93,100,312 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO
IEA		 MGI:104654 (PMID:19154718)
GO_REF:0000107		 RGD
Ensembl		 PMID:19154718 GO_REF:0000107 NCBI chr 1:28,641,100...28,651,187
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Mycl MYCL proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:97357 (PMID:23022312)
GO_REF:0000107		 RGD
Ensembl		 PMID:23022312 GO_REF:0000107 NCBI chr 5:135,274,713...135,281,584
Ensembl chr 5:135,274,748...135,281,582 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:96799 (PMID:23022312)
GO_REF:0000107		 RGD
Ensembl		 PMID:23022312 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA		 MGI:3044585 (PMID:25535395)
GO_REF:0000107		 RGD
Ensembl		 PMID:25535395 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esrp1 epithelial splicing regulatory protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29107558)		 UniProt
RGD		 PMID:29107558 GO_REF:0000024 NCBI chr 5:24,427,611...24,482,157
Ensembl chr 5:24,428,717...24,482,062 		JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:104564 (PMID:9784491) RGD PMID:9784491 NCBI chr 4:169,491,273...169,496,500
Ensembl chr 4:167,760,181...167,764,982 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO
IEA		 MGI:104565 (PMID:9784491)
GO_REF:0000107		 RGD
Ensembl		 PMID:9784491 GO_REF:0000107 NCBI chr 1:208,084,801...208,087,680
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:22323600)		 Ensembl
RGD		 PMID:22323600 GO_REF:0000107 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17075007)		 UniProt
Ensembl
RGD		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:20890044) RGD PMID:20890044 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO
IEA		 (PMID:23932931)
GO_REF:0000107		 RGD
Ensembl		 PMID:23932931 GO_REF:0000107 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:11747369) RGD PMID:11747369 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of_or_within ISO
IEA		 (PMID:11747369)
GO_REF:0000107		 RGD
Ensembl		 PMID:11747369 GO_REF:0000107 NCBI chr 1:219,312,512...219,314,535
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:11747369)
GO_REF:0000107		 RGD
Ensembl		 PMID:11747369 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase acts_upstream_of_or_within ISO
IEA		 MGI:2179948 (PMID:15579149)
GO_REF:0000107		 RGD
Ensembl		 PMID:15579149 GO_REF:0000107 NCBI chr12:25,042,882...25,050,608
Ensembl chr12:19,407,360...19,413,651 		JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:16,776,664...16,779,634
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO MGI:1856535 (PMID:21052544), (PMID:24791901) RGD PMID:21052544 PMID:24791901 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (PMID:20592197) RGD PMID:20592197 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:31302159) RGD PMID:31302159 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1857951 (PMID:10982921) RGD PMID:10982921 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within ISO
IEA		 (PMID:26975023)
GO_REF:0000107		 RGD
Ensembl		 PMID:26975023 GO_REF:0000107 NCBI chr10:94,412,261...94,551,224
Ensembl chr10:94,447,399...94,542,941 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1857429 (PMID:9699561)
GO_REF:0000107		 RGD
Ensembl		 PMID:9699561 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO
IEA		 (PMID:31302159)
GO_REF:0000107		 RGD
Ensembl		 PMID:31302159 GO_REF:0000107 NCBI chr 1:211,614,195...211,633,504
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA		 (PMID:31302159), (PMID:36125046), (PMID:36700052)
GO_REF:0000107		 RGD
Ensembl		 PMID:31302159 PMID:36125046 PMID:36700052 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO
IEA		 MGI:2158497 (PMID:12654290)
GO_REF:0000107		 RGD
Ensembl		 PMID:12654290 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO MGI:3605845 (PMID:21052544) RGD PMID:21052544 NCBI chr  X:17,539,992...17,568,308
Ensembl chr  X:14,868,024...14,896,413 		JBrowse link
G Calb1 calbindin 1 involved_in ISO
IEA		 (PMID:10741426)
GO_REF:0000107		 RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:21052544), (PMID:31302159) RGD PMID:21052544 PMID:31302159 NCBI chr 7:37,196,765...37,285,955
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 7:10,463,773...10,465,496
Ensembl chr 7:9,813,150...9,815,053 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within_positive_effect ISO (PMID:30705315)
(PMID:17921253), (PMID:28057640)		 RGD PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO
IEA		 (PMID:15300250)
GO_REF:0000107		 RGD
Ensembl		 PMID:15300250 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr11:93,702,382...93,716,059
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO
IEA		 MGI:1856959 (PMID:15565184), (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:15565184 PMID:21052544 GO_REF:0000107 NCBI chr16:81,451,941...81,462,046
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:1353425|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr 9:46,943,353...46,989,862
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA		 (PMID:22447858), (PMID:25147295)
GO_REF:0000107		 RGD
Ensembl		 PMID:22447858 PMID:25147295 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:85,667,971...85,681,852
Ensembl chr 1:76,540,141...76,545,818 		JBrowse link
G Dclk1 doublecortin-like kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:141,567,215...141,861,088
Ensembl chr 2:139,417,163...139,710,956 		JBrowse link
G Dcx doublecortin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:107,430,767...107,573,612
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19389377)		 UniProt
RGD		 PMID:19389377 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 acts_upstream_of_or_within ISO
IEA		 (PMID:37691820)
GO_REF:0000107		 RGD
Ensembl		 PMID:37691820 GO_REF:0000107 NCBI chr 2:194,035,624...194,064,415
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:205,825,937...205,829,124
Ensembl chr 1:196,396,366...196,399,553 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:19,891,313...19,982,770
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:119,158,380...119,173,483
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1341818|MGI:1353425 (PMID:21052544), (PMID:21124780)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 PMID:21124780 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnb1 G protein subunit beta 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 5:171,357,778...171,424,489
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 acts_upstream_of_or_within ISO
IEA		 MGI:3605835 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr10:35,669,003...35,683,729
Ensembl chr10:35,167,985...35,182,717 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (PMID:28728022) RGD PMID:28728022 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:146,739,978...146,750,961
Ensembl chr 5:141,455,613...141,463,841 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:57,801,842...57,817,434
Ensembl chr 4:57,801,831...57,819,076 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:118,135,204...118,139,892
Ensembl chr 8:109,256,728...109,261,359 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO
IEA		 MGI:3580706 (PMID:15345036)
GO_REF:0000107		 RGD
Ensembl		 PMID:15345036 GO_REF:0000107 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within ISO
IEA		 MGI:1344394 (PMID:19907020)
GO_REF:0000107		 RGD
Ensembl		 PMID:19907020 GO_REF:0000107 NCBI chr 8:118,056,899...118,069,090
Ensembl chr 8:109,178,409...109,190,549 		JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO MGI:99916 (PMID:19907020) RGD PMID:19907020 NCBI chr 3:35,562,989...35,624,460
Ensembl chr 3:15,165,220...15,226,697 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107		 RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
IEA		 (PMID:10741426)
GO_REF:0000107		 RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97490 (PMID:19146846)
GO_REF:0000107		 RGD
Ensembl		 PMID:19146846 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:83,354,602...83,364,053
Ensembl chr14:79,134,574...79,140,482 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:31,594,621...31,644,946
Ensembl chr 1:29,766,071...29,816,401 		JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:101,369,989...101,395,333
Ensembl chr 6:95,636,858...95,662,137 		JBrowse link
G Mdm1 Mdm1 nuclear protein involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2664154 (PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr 7:55,615,459...55,651,889
Ensembl chr 7:53,729,610...53,766,034 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO
IEA		 (PMID:27654426)
GO_REF:0000107		 RGD
Ensembl		 PMID:27654426 GO_REF:0000107 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:123,816,614...123,857,971 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,752,246...59,752,307
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:77,853,560...77,967,653
Ensembl chr 5:73,058,121...73,171,932 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO
IEA		 MGI:2386445 (PMID:11283949), (PMID:9356462)
GO_REF:0000107		 RGD
Ensembl		 PMID:9356462 PMID:11283949 GO_REF:0000107 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:26607664)
GO_REF:0000107		 RGD
Ensembl		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:9071226)
GO_REF:0000107		 RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO
IEA		 MGI:3605480 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfia nuclear factor I/A acts_upstream_of_or_within ISO
IEA		 MGI:6280648 (PMID:31128945)
GO_REF:0000107		 RGD
Ensembl		 PMID:31128945 GO_REF:0000107 NCBI chr 5:117,359,006...117,897,391
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO
IEA		 MGI:5052268 (PMID:31128945)
GO_REF:0000107		 RGD
Ensembl		 PMID:31128945 GO_REF:0000107 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:31128945) RGD PMID:31128945 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:11,686,088...11,706,604
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (PMID:19208653) RGD PMID:19208653 NCBI chr 3:135,413,927...135,469,505
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 5:168,270,522...168,356,393
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO
IEA		 MGI:2176490|MGI:2176560 (PMID:11997145), (PMID:16702404)
GO_REF:0000107		 RGD
Ensembl		 PMID:11997145 PMID:16702404 GO_REF:0000107 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO
IEA		 MGI:1346317 (PMID:12407160), (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:12407160 PMID:21052544 GO_REF:0000107 NCBI chr 8:69,261,343...69,269,081
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEP RGD PMID:22714110 RGD:124713571 NCBI chr 3:62,098,739...62,115,926
Ensembl chr 3:41,689,851...41,697,877 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA		 (PMID:25542970)
GO_REF:0000107		 RGD
Ensembl		 PMID:25542970 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO MGI:1341818|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr16:9,926,638...9,935,810
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Pax4 paired box 4 involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:19012751 GO_REF:0000033, RGD:2311636 NCBI chr 4:58,023,873...58,032,265
Ensembl chr 4:57,058,462...57,063,408 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in		 IEP
IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:96785 (PMID:19146846)		 Ensembl
GO_Central
RGD		 PMID:19146846 PMID:19012751 GO_REF:0000033 GO_REF:0000107, RGD:2311636 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pde6a phosphodiesterase 6A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr18:56,947,249...57,019,015
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21052544)		 GO_Central
Ensembl
RGD		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr14:1,468,302...1,511,435
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pfdn5 prefoldin subunit 5 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 7:133,451,778...133,456,516
Ensembl chr 7:133,451,453...133,456,516 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:2176272|MGI:3582493 (PMID:8637595), (PMID:9630743)
GO_REF:0000107		 RGD
Ensembl		 PMID:8637595 PMID:9630743 GO_REF:0000107 NCBI chr19:46,390,958...46,394,599
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1856523|MGI:6367794|MGI:97998 (PMID:15964665), (PMID:21052544), (PMID:28053051)
GO_REF:0000107		 RGD
Ensembl		 PMID:15964665 PMID:21052544 PMID:28053051 GO_REF:0000107 NCBI chr 9:21,563,770...21,579,074
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (PMID:11562477) RGD PMID:11562477 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Rd3 RD3 regulator of GUCY2D involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:8486383)
(PMID:21052544)		 GO_Central
Ensembl
RGD		 PMID:8486383 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr13:106,060,657...106,097,063
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:152,998,344...153,040,556
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:49,251,259...49,271,440
Ensembl chr13:46,699,463...46,717,998 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:102791|MGI:2181662 (PMID:28053051)
GO_REF:0000107		 RGD
Ensembl		 PMID:28053051 GO_REF:0000107 NCBI chr 1:215,253,155...215,255,163
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21052544)		 GO_Central
Ensembl
RGD		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:42,435,803...42,447,165
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:27,282,997...27,341,021
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (PMID:10049578), (PMID:9331275) RGD PMID:9331275 PMID:10049578 NCBI chr11:58,122,997...58,128,405
Ensembl chr11:44,653,937...44,659,370 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:166,235,904...166,260,206
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Scaper S-phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) RGD PMID:28794130 NCBI chr 8:55,932,717...56,332,222
Ensembl chr 8:55,933,306...56,332,122 		JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:60,748,504...60,760,898
Ensembl chr10:60,249,708...60,262,646 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in ISO
IEA		 (PMID:28703795)
GO_REF:0000107		 RGD
Ensembl		 PMID:28703795 GO_REF:0000107 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA		 (PMID:37862028)
GO_REF:0000107		 RGD
Ensembl		 PMID:37862028 GO_REF:0000107 NCBI chr19:47,522,781...47,561,443
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Slc4a5 solute carrier family 4 member 5 acts_upstream_of_or_within ISO (PMID:21705333) RGD PMID:21705333 NCBI chr 4:117,267,803...117,368,024
Ensembl chr 4:115,725,592...115,810,323 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA		 MGI:4440463 (PMID:20159594)
GO_REF:0000107		 RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA		 MGI:3852642 (PMID:20711468)
GO_REF:0000107		 RGD
Ensembl		 PMID:20711468 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:26,115,150...26,167,465
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA		 (PMID:18973577)
GO_REF:0000107		 RGD
Ensembl		 PMID:18973577 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:111,214,048...111,431,892
Ensembl chr 6:105,483,191...105,700,934 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:84,888,847...84,942,095
Ensembl chr15:78,485,315...78,527,355
Ensembl chr 3:78,485,315...78,527,355 		JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA		 (PMID:10595508)
GO_REF:0000107		 RGD
Ensembl		 PMID:10595508 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20797688)		 UniProt
Ensembl
RGD		 PMID:20797688 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:25,174,181...25,177,442
Ensembl chr 6:25,174,178...25,177,439 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Arl6 ARF like GTPase 6 acts_upstream_of_or_within ISO
IEA		 MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
GO_REF:0000107		 RGD
Ensembl		 PMID:20333246 PMID:22139371 GO_REF:0000107 NCBI chr11:54,180,271...54,207,136
Ensembl chr11:40,712,022...40,737,937 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO
IEA		 (PMID:24413176)
GO_REF:0000107		 RGD
Ensembl		 PMID:24413176 GO_REF:0000107 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Calb1 calbindin 1 involved_in ISO
IEA		 (PMID:10741426)
GO_REF:0000107		 RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17234588)
GO_REF:0000107		 RGD
Ensembl		 PMID:17234588 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO
IEA		 MGI:1341907 (PMID:21903076)
GO_REF:0000107		 RGD
Ensembl		 PMID:21903076 GO_REF:0000107 NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2444314 (PMID:21903076)
GO_REF:0000107		 RGD
Ensembl		 PMID:21903076 GO_REF:0000107 NCBI chr 3:109,229,223...109,231,324
Ensembl chr 3:88,774,220...88,776,321 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO
IEA		 (PMID:15363391)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:30,503,416...30,509,396
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107		 RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:10741426), (PMID:18094249)		 UniProt
Ensembl
RGD		 PMID:10741426 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in ISO (PMID:22407321) RGD PMID:22407321 NCBI chr 8:64,892,312...65,218,984
Ensembl chr 8:64,892,387...65,216,061 		JBrowse link
G Mir145 microRNA 145 IMP RGD PMID:34291866 RGD:155260301 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:29654250)
GO_REF:0000107		 RGD
Ensembl		 PMID:29654250 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:19228982) RGD PMID:19228982 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17075007)		 UniProt
Ensembl
RGD		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14623235)		 UniProt
Ensembl
RGD		 PMID:14623235 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:114,086,380...114,791,000
Ensembl chr 9:106,639,573...107,343,698 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within ISO
IEA		 MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152)
GO_REF:0000107		 RGD
Ensembl		 PMID:11983912 PMID:15326152 GO_REF:0000107 NCBI chr  X:37,771,135...37,800,894
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA		 (PMID:26287463)
GO_REF:0000107		 RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2655190 (PMID:19766171)
GO_REF:0000107
MGI:2655190 (PMID:29677370)		 RGD
Ensembl		 PMID:19766171 PMID:29677370 GO_REF:0000107 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO
IEA		 (PMID:20607706)
GO_REF:0000107		 RGD
Ensembl		 PMID:20607706 GO_REF:0000107 NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19837033)		 UniProt
Ensembl
RGD		 PMID:19837033 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:51,279,562...51,355,030
Ensembl chr 4:50,313,772...50,389,246 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:12915475)
GO_REF:0000107
(PMID:17234588), (PMID:25147295)		 RGD
Ensembl		 PMID:12915475 PMID:17234588 PMID:25147295 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19389377)		 UniProt
RGD		 PMID:19389377 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO MGI:6693686 (PMID:32265257) RGD PMID:32265257 NCBI chr11:57,787,914...57,887,450
Ensembl chr11:44,318,836...44,418,382 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA		 (PMID:15346351)
GO_REF:0000107		 RGD
Ensembl		 PMID:15346351 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2159011|MGI:2673381 (PMID:20144606) RGD PMID:20144606 NCBI chr 9:111,698,913...111,855,257
Ensembl chr 9:104,252,001...104,408,349 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA		 (PMID:27008858)
GO_REF:0000107		 RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:140,510,933...140,525,828
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:15716406)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO
IEA		 MGI:3605481 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IEA		 (PMID:18654668)
GO_REF:0000107		 RGD
Ensembl		 PMID:18654668 GO_REF:0000107 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within ISO
IEA		 MGI:3701996 (PMID:17301087)
GO_REF:0000107		 RGD
Ensembl		 PMID:17301087 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:20300562)
GO_REF:0000107		 RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:215,253,155...215,255,163
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO
IEA		 MGI:2386674 (PMID:10725384)
GO_REF:0000107		 RGD
Ensembl		 PMID:10725384 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:3625176 (PMID:16651659) RGD PMID:16651659 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1856112 (PMID:16854970), (PMID:8630490)
GO_REF:0000107		 RGD
Ensembl		 PMID:8630490 PMID:16854970 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in ISO
IEA		 (PMID:19903896)
GO_REF:0000107		 RGD
Ensembl		 PMID:19903896 GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (PMID:19903896) RGD PMID:19903896 NCBI chr 7:134,117,917...134,135,306
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO
IEA		 (PMID:19903896)
GO_REF:0000107		 RGD
Ensembl		 PMID:19903896 GO_REF:0000107 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO
IEA		 MGI:2154690 (PMID:19005183)
GO_REF:0000107		 RGD
Ensembl		 PMID:19005183 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within ISO
IEA		 MGI:2387667 (PMID:23217714), (PMID:25083995), (PMID:25414188)
GO_REF:0000107		 RGD
Ensembl		 PMID:23217714 PMID:25083995 PMID:25414188 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:2386679 (PMID:21212189)
GO_REF:0000107		 RGD
Ensembl		 PMID:21212189 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107		 RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:2183279|MGI:3604604 (PMID:22272305), (PMID:25083995)
GO_REF:0000107		 RGD
Ensembl		 PMID:22272305 PMID:25083995 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within ISO (PMID:20947829) RGD PMID:20947829 NCBI chr10:20,572,523...20,572,632
Ensembl chr10:20,068,451...20,068,560 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,819,386...1,819,482
Ensembl chr17:1,813,667...1,813,763 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,455...40,859,562
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,603...40,859,689
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,819,147...1,819,243
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199|MGI:4414794 (PMID:15716406), (PMID:18978344), (PMID:23217714), (PMID:25083995), (PMID:25414188), (PMID:28575130), (PMID:29654250), (PMID:29715368)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO
IEA		 (PMID:25414188)
GO_REF:0000107		 RGD
Ensembl		 PMID:25414188 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS
ISO
IEA		 GO_REF:0000024
UniProtKB:P05622 (PMID:11239463)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11239463 GO_REF:0000024 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P26618 (PMID:11239463), (PMID:14624252)		 UniProt
RGD		 PMID:11239463 PMID:14624252 GO_REF:0000024 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:20300562)
GO_REF:0000107		 RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:215,253,155...215,255,163
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:29715368)
GO_REF:0000107		 RGD
Ensembl		 PMID:29715368 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO (PMID:31698979) RGD PMID:31698979 NCBI chr16:8,126,630...8,206,556
Ensembl chr16:8,120,336...8,200,269 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within ISO
IEA		 MGI:3812708 (PMID:22535667)
GO_REF:0000107		 RGD
Ensembl		 PMID:22535667 GO_REF:0000107 NCBI chr10:53,650,521...53,663,269
Ensembl chr10:53,650,553...53,663,913 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within ISO
IEA		 MGI:3838012 (PMID:19197003)
GO_REF:0000107		 RGD
Ensembl		 PMID:19197003 GO_REF:0000107 NCBI chr 5:152,737,371...152,797,118
Ensembl chr 5:147,453,712...147,513,452 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:12172548), (PMID:15024691)
GO_REF:0000107
MGI:102570|MGI:1278315|MGI:4412057 (PMID:19837032)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:12172548 PMID:15024691 PMID:19837032 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within IMP
IEA
ISO		 GO_REF:0000107
MGI:102570|MGI:108520|MGI:2183279|MGI:3774282 (PMID:11956231), (PMID:18263894), (PMID:19837032)		 Ensembl
RGD		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 GO_REF:0000107, RGD:40902996 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:108520|MGI:1278315|MGI:2676199 (PMID:18978344), (PMID:19837032)
GO_REF:0000107		 RGD
Ensembl		 PMID:18978344 PMID:19837032 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO
IEA		 (PMID:24401374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24401374 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within ISO
IEA		 MGI:4365246 (PMID:22535667)
GO_REF:0000107		 RGD
Ensembl		 PMID:22535667 GO_REF:0000107 NCBI chr 6:99,771,104...99,853,366
Ensembl chr 6:94,035,483...94,118,275 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:3056615 (PMID:16249514)
GO_REF:0000107		 RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 1:210,857,223...210,872,431
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) RGD PMID:24467707 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:1890816 (PMID:18322081)
GO_REF:0000107		 RGD
Ensembl		 PMID:18322081 GO_REF:0000107 NCBI chr19:14,639,052...14,643,911
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:30,503,416...30,509,396
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO
IEA		 MGI:3052661|MGI:3605621 (PMID:28199486)
GO_REF:0000107		 RGD
Ensembl		 PMID:28199486 GO_REF:0000107 NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081)
GO_REF:0000107		 RGD
Ensembl		 PMID:14745032 PMID:15043821 PMID:18322081 GO_REF:0000107 NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:1856112 (PMID:8630490)
GO_REF:0000107		 RGD
Ensembl		 PMID:8630490 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (PMID:30146259) RGD PMID:30146259 NCBI chr 7:89,226,358...89,374,266
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO
IEA		 (PMID:20818663)
GO_REF:0000107		 RGD
Ensembl		 PMID:20818663 GO_REF:0000107 NCBI chr16:84,885,597...84,996,482
Ensembl chr16:78,183,533...78,294,412 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:20032512)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20032512 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO
IEA		 (PMID:15035989)
GO_REF:0000107		 RGD
Ensembl		 PMID:15035989 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA		 (PMID:15024691), (PMID:15346351)
GO_REF:0000107
(PMID:27031698)		 RGD
Ensembl		 PMID:15024691 PMID:15346351 PMID:27031698 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:18978344), (PMID:22394677), (PMID:28575130)
GO_REF:0000107		 RGD
Ensembl		 PMID:18978344 PMID:22394677 PMID:28575130 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1857429 (PMID:14517994)
GO_REF:0000107		 RGD
Ensembl		 PMID:14517994 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of ISO MGI:1857430 (PMID:10321489) RGD PMID:10321489 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of ISO
IEA		 MGI:3054837 (PMID:15363390)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363390 GO_REF:0000107 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Faslg Fas ligand acts_upstream_of_or_within ISO
IEA		 MGI:1856384 (PMID:14517994)
GO_REF:0000107		 RGD
Ensembl		 PMID:14517994 GO_REF:0000107 NCBI chr13:76,680,885...76,706,042
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:3056615 (PMID:16249514)
GO_REF:0000107		 RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 1:210,857,223...210,872,431
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:3608770 (PMID:21052544) RGD PMID:21052544 NCBI chr 9:46,943,353...46,989,862
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) RGD PMID:23001562 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within		 ISO
IEA		 (PMID:20203194)
GO_REF:0000107
MGI:2664293 (PMID:20203194)		 RGD
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chr 6:135,107,072...135,108,933
Ensembl chr 6:129,285,749...129,286,660 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845 (PMID:17065522), (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 2:49,495,771...49,899,983
Ensembl chr 2:49,495,771...49,899,774 		JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657) RGD PMID:21857657 NCBI chr15:43,017,834...43,017,918
Ensembl chr15:38,842,014...38,842,098 		JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO MGI:2676807 (PMID:21857657) RGD PMID:21857657 NCBI chr 2:102,051,095...102,051,203
Ensembl chr 2:100,134,866...100,134,974 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,752,246...59,752,307
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:245,322,015...245,377,874
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16574740)		 UniProt
Ensembl
RGD		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA		 (PMID:14507858)
GO_REF:0000107		 RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of ISO
IEA		 (PMID:20203194)
GO_REF:0000107		 RGD
Ensembl		 PMID:20203194 GO_REF:0000107 NCBI chr15:10,115,954...10,465,231
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISS
ISO		 GO_REF:0000024
(PMID:10567740)		 UniProt
RGD		 PMID:10567740 GO_REF:0000024 NCBI chr 8:53,286,396...53,291,541
Ensembl chr 8:44,389,513...44,394,659 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA		 (PMID:36125046)
GO_REF:0000107		 RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:2152779|MGI:95779 (PMID:19815523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845|MGI:95778 (PMID:19815523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO
IEA		 MGI:1933835|MGI:3052237 (PMID:16452096)
GO_REF:0000107		 RGD
Ensembl		 PMID:16452096 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:23844226), (PMID:25991857) RGD PMID:23844226 PMID:25991857 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Cldn19 claudin 19 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27593915), (PMID:30937396)
(PMID:30937396)		 UniProt
Ensembl
RGD		 PMID:27593915 PMID:30937396 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:138,148,234...138,155,672
Ensembl chr 5:132,863,267...132,868,227 		JBrowse link
G Cldn3 claudin 3 involved_in ISO
IEA		 (PMID:27593915)
GO_REF:0000107		 RGD
Ensembl		 PMID:27593915 GO_REF:0000107 NCBI chr12:27,345,075...27,346,547
Ensembl chr12:21,708,398...21,711,001 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO
IEA		 (PMID:11724781)
GO_REF:0000107		 RGD
Ensembl		 PMID:11724781 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA		 (PMID:27008858)
GO_REF:0000107		 RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:140,510,933...140,525,828
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:9071226)
GO_REF:0000107		 RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA		 (PMID:37862028)
GO_REF:0000107		 RGD
Ensembl		 PMID:37862028 GO_REF:0000107 NCBI chr19:47,522,781...47,561,443
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA		 MGI:4440463 (PMID:20159594)
GO_REF:0000107		 RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within ISO
IEA		 MGI:5811600 (PMID:33064130)
GO_REF:0000107		 RGD
Ensembl		 PMID:33064130 GO_REF:0000107 NCBI chr 1:152,418,929...152,692,405
Ensembl chr 1:143,006,344...143,221,171 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:16000322) RGD PMID:16000322 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO
IEA		 MGI:3045473 (PMID:15173597)
GO_REF:0000107		 RGD
Ensembl		 PMID:15173597 GO_REF:0000107 NCBI chr 8:68,627,739...68,661,232
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA		 MGI:3054837 (PMID:17255172)
GO_REF:0000107		 RGD
Ensembl		 PMID:17255172 GO_REF:0000107 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) RGD PMID:17921253 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO MGI:3665263 (PMID:16877424) RGD PMID:16877424 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:17712420)
GO_REF:0000107		 RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2152376 (PMID:11694879)		 GO_Central
Ensembl
RGD		 PMID:11694879 GO_REF:0000033 GO_REF:0000107 NCBI chr15:32,977,023...32,981,442
Ensembl chr15:29,008,104...29,009,832 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:3039928 (PMID:10516311)
GO_REF:0000107		 RGD
Ensembl		 PMID:10516311 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16574740), (PMID:19805139)		 UniProt
Ensembl
RGD		 PMID:16574740 PMID:19805139 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA		 (PMID:14507858)
GO_REF:0000107		 RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 5:172,113,900...172,142,026
Ensembl chr 5:166,831,663...166,850,009 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO
IEA		 (PMID:33603070)
GO_REF:0000107		 RGD
Ensembl		 PMID:33603070 GO_REF:0000107 NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within ISO MGI:4421441 (PMID:19966281) RGD PMID:19966281 NCBI chr 1:127,130,686...127,247,219
Ensembl chr 1:117,718,896...117,834,605 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA		 (PMID:36125046)
GO_REF:0000107		 RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO
IEA		 (PMID:15207851)
GO_REF:0000107		 RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr 1:219,312,512...219,314,535
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:2152779|MGI:95779 (PMID:19815523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845|MGI:95778 (PMID:19815523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:9071226)
GO_REF:0000107		 RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rorb RAR-related orphan receptor B acts_upstream_of_or_within ISO
IEA		 MGI:2158692 (PMID:25296752)
GO_REF:0000107		 RGD
Ensembl		 PMID:25296752 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO
IEA		 (PMID:15207851)
GO_REF:0000107		 RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:26607664)
GO_REF:0000107		 RGD
Ensembl		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO
IEA		 MGI:4947230 (PMID:32960171)
GO_REF:0000107		 RGD
Ensembl		 PMID:32960171 GO_REF:0000107 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:4818492 (PMID:20652952)
GO_REF:0000107		 RGD
Ensembl		 PMID:20652952 GO_REF:0000107 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:1859647 (PMID:15765517)
GO_REF:0000107		 RGD
Ensembl		 PMID:15765517 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:98493 (PMID:19855134)
GO_REF:0000107		 RGD
Ensembl		 PMID:19855134 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA		 MGI:95517 (PMID:17601531)
GO_REF:0000107		 RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809 (PMID:17601531) RGD PMID:17601531 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:67,157,141...67,198,287
Ensembl chr 5:62,361,822...62,402,733 		JBrowse link
G Sparc secreted protein acidic and cysteine rich involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:40,017,065...40,038,816
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2444748 (PMID:19855134)		 UniProt
RGD		 PMID:19855134 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO
IEA		 (PMID:33795231)
GO_REF:0000107		 RGD
Ensembl		 PMID:33795231 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1861230 (PMID:21980308) RGD PMID:21980308 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
sensory organ boundary specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntf4 neurotrophin 4 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 PMID:10479455
GO_REF:0000107
MGI:1933845 (PMID:10479455)		 Ensembl
RGD		 PMID:10479455 PMID:10479455 GO_REF:0000107, RGD:8554019 NCBI chr 1:105,030,035...105,032,866
Ensembl chr 1:95,893,457...95,897,243 		JBrowse link
stereocilium maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clrn2 clarin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:5792002|MGI:6458758 (PMID:31448880)
GO_REF:0000107
(PMID:33496845)		 RGD
Ensembl		 PMID:31448880 PMID:33496845 GO_REF:0000107 NCBI chr14:69,868,556...69,878,850
Ensembl chr14:65,656,550...65,666,193 		JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within ISO
IEA		 MGI:6455516 (PMID:31628468)
GO_REF:0000107		 RGD
Ensembl		 PMID:31628468 GO_REF:0000107 NCBI chr 4:104,614,665...104,653,122
Ensembl chr 4:104,614,676...104,653,053 		JBrowse link
G Pjvk pejvakin acts_upstream_of_or_within ISO
IEA		 MGI:5014098|MGI:5925280 (PMID:28209736)
GO_REF:0000107		 RGD
Ensembl		 PMID:28209736 GO_REF:0000107 NCBI chr 3:82,002,106...82,012,273
Ensembl chr 3:61,596,641...61,605,045 		JBrowse link
G Tprn taperin involved_in ISS
IEA
ISO
IBA		 GO_REF:0000024
GO_REF:0000107
MGI:5897817 (PMID:27693694), (PMID:30159668), (PMID:37952086)
GO_REF:0000033		 UniProt
Ensembl
RGD
GO_Central		 PMID:27693694 PMID:30159668 PMID:37952086 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,474,322...28,481,800
Ensembl chr 3:8,075,137...8,083,642 		JBrowse link
taste bud development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO MGI:1857136 (PMID:24378336) RGD PMID:24378336 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Ntf4 neurotrophin 4 acts_upstream_of_or_within ISO
IEA		 (PMID:24378336)
GO_REF:0000107		 RGD
Ensembl		 PMID:24378336 GO_REF:0000107 NCBI chr 1:105,030,035...105,032,866
Ensembl chr 1:95,893,457...95,897,243 		JBrowse link
tongue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnc2 basonuclin zinc finger protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:3639337 (PMID:19706529)
GO_REF:0000107		 RGD
Ensembl		 PMID:19706529 GO_REF:0000107 NCBI chr 5:98,679,071...99,016,044
Ensembl chr 5:98,687,410...99,079,426 		JBrowse link
G Egfr epidermal growth factor receptor IEP RGD PMID:10908606 RGD:2289970 NCBI chr14:95,378,626...95,551,358
Ensembl chr14:91,177,067...91,344,382 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 IEP RGD PMID:10908606 RGD:2289970 NCBI chr10:83,907,491...83,931,365
Ensembl chr10:83,411,313...83,435,078 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 IEP RGD PMID:10908606 RGD:2289970 NCBI chr 7:1,579,079...1,600,379
Ensembl chr 7:996,225...1,015,525 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:18816854)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816854 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA		 MGI:3715149 (PMID:17531968)
GO_REF:0000107		 RGD
Ensembl		 PMID:17531968 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Kcne2 potassium voltage-gated channel subfamily E regulatory subunit 2 IEP RGD PMID:15365256 RGD:7243961 NCBI chr11:45,003,468...45,015,942
Ensembl chr11:31,295,614...31,530,043 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IEP RGD PMID:10908606 RGD:2289970 NCBI chr14:32,901,615...32,978,895
Ensembl chr14:32,548,877...32,624,652 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1926601 (PMID:17284610)
GO_REF:0000107		 RGD
Ensembl		 PMID:17284610 GO_REF:0000107 NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:44,443,151...44,447,248
Ensembl chr15:44,443,101...44,447,247 		JBrowse link
G Prdm16 PR/SET domain 16 acts_upstream_of_or_within ISO MGI:3576024 (PMID:20007998) RGD PMID:20007998 NCBI chr 5:170,162,275...170,486,371
Ensembl chr 5:164,880,587...165,203,601 		JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six1 SIX homeobox 1 involved_in ISO
IEA		 (PMID:21978088)
GO_REF:0000107		 RGD
Ensembl		 PMID:21978088 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (PMID:21978088) RGD PMID:21978088 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:3589809 (PMID:17015430) RGD PMID:17015430 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Wnt10a Wnt family member 10A involved_in ISO
IEA		 (PMID:17847007), (PMID:19559398)
GO_REF:0000107		 RGD
Ensembl		 PMID:17847007 PMID:19559398 GO_REF:0000107 NCBI chr 9:83,798,594...83,811,060
Ensembl chr 9:76,349,931...76,362,400 		JBrowse link
tongue morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:16828469 RGD:2289002 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO
IEA		 (PMID:18816858)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816858 GO_REF:0000107 NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:3531090 (PMID:27158779) RGD PMID:27158779 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within ISO
IEA		 MGI:1926422 (PMID:9420327)
GO_REF:0000107		 RGD
Ensembl		 PMID:9420327 GO_REF:0000107 NCBI chr 7:134,058,640...134,065,479
Ensembl chr 7:134,058,640...134,064,800 		JBrowse link
G Intu inturned planar cell polarity protein involved_in ISO
IEA		 (PMID:27158779)
GO_REF:0000107		 RGD
Ensembl		 PMID:27158779 GO_REF:0000107 NCBI chr 2:125,528,965...125,613,295
Ensembl chr 2:123,609,807...123,682,676 		JBrowse link
G Krt13 keratin 13 IEP RGD PMID:16271699 RGD:1600171 NCBI chr10:85,051,887...85,056,099
Ensembl chr10:85,051,889...85,056,084 		JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18816858)		 UniProt
RGD		 PMID:18816858 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:27158779)
GO_REF:0000107
MGI:5558100 (PMID:27158779)		 RGD
Ensembl		 PMID:27158779 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
trabecular meshwork development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:23979599)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:23979599 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:17064680
GO_REF:0000107
(PMID:17064680)		 Ensembl
RGD		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:20568247) RGD PMID:20568247 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
vestibular receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 involved_in ISO
IEA		 (PMID:11276175)
GO_REF:0000107		 RGD
Ensembl		 PMID:11276175 GO_REF:0000107 NCBI chr14:40,358,077...40,480,493
Ensembl chr14:40,004,169...40,126,571 		JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within ISO
IEA		 MGI:2679316 (PMID:22357859)
GO_REF:0000107		 RGD
Ensembl		 PMID:22357859 GO_REF:0000107 NCBI chr 7:44,720,916...44,903,291
Ensembl chr 7:42,837,109...43,016,917 		JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 involved_in ISO
IEA		 (PMID:25124451)
GO_REF:0000107		 RGD
Ensembl		 PMID:25124451 GO_REF:0000107 NCBI chr 8:105,196,312...105,306,252
Ensembl chr 8:96,317,849...96,385,195 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    developmental process 7149
      anatomical structure development 6646
        animal organ development 3708
          sensory organ development 751
            amphid sensory organ development + 0
            chaeta development + 0
            ear development + 289
            eye development + 498
            neuromast development + 2
            nose development + 16
            ocellus development + 0
            otic vesicle development + 16
            sensory organ boundary specification + 1
            sensory organ morphogenesis + 346
            sensory organ precursor cell division 0
            sex comb development 0
            taste bud development + 2
            tongue development + 30
paths to the root