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ONTOLOGY REPORT - ANNOTATIONS

Term:pattern specification process
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Accession:GO:0007389 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
Synonyms:related_synonym: pattern biosynthesis;   pattern formation


show annotations for term's descendants           Sort by:
pattern specification process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:108051 (PMID:17849440)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:17849440 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:108359 (PMID:11641221)
GO_REF:0000107 		RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 2:195,231,197...195,241,609
Ensembl chr 2:195,231,197...195,241,609 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA 		MGI:1277097 (PMID:11641221)
GO_REF:0000107 		RGD
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Apc APC regulator of WNT signaling pathway involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3521822 (PMID:16740478) 		GO_Central
RGD		 PMID:16740478 GO_REF:0000033 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:9,392,336...9,414,364
Ensembl chr 7:9,392,336...9,414,310 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857470 (PMID:15930101)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930101 GO_REF:0000107 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Asph aspartate-beta-hydroxylase acts_upstream_of_or_within ISO MGI:2179287 (PMID:11773073) RGD PMID:11773073 NCBI chr 5:22,601,581...22,814,107
Ensembl chr 5:22,603,486...22,813,876 		JBrowse link
G Bmp5 bone morphogenetic protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:1858106|MGI:1930367|MGI:2153906|MGI:2153907 (PMID:1339316)
GO_REF:0000107 		RGD
Ensembl		 PMID:1339316 GO_REF:0000107 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA 		MGI:1857654 (PMID:7590254)
GO_REF:0000107 		RGD
Ensembl		 PMID:7590254 GO_REF:0000107 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158390|MGI:2176835 (PMID:15716346)
GO_REF:0000107 		RGD
Ensembl		 PMID:15716346 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Cdx1 caudal type homeo box 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154514 (PMID:11959827)
GO_REF:0000107 		RGD
Ensembl		 PMID:11959827 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857928 (PMID:11959827)
GO_REF:0000107 		RGD
Ensembl		 PMID:11959827 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Chrd chordin acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2157350 (PMID:12397106)
GO_REF:0000117 		RGD
UniProt		 PMID:12397106 GO_REF:0000117 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Cramp1 cramped chromatin regulator homolog 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,983,781...14,032,409
Ensembl chr10:13,983,866...14,032,392 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (PMID:16399080) RGD PMID:16399080 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G Dchs1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		MGI:4867020 (PMID:26258302)
GO_REF:0000107 		RGD
Ensembl		 PMID:26258302 GO_REF:0000107 NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780|MGI:2150426 (PMID:16530750), (PMID:16916509) RGD PMID:16530750 PMID:16916509 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:95664 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Fst follistatin acts_upstream_of_or_within ISO
IEA 		MGI:1857467 (PMID:15525533)
GO_REF:0000107 		RGD
Ensembl		 PMID:15525533 GO_REF:0000107 NCBI chr 2:46,123,260...46,130,584
Ensembl chr 2:46,123,439...46,130,571 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857164|MGI:95729 (PMID:14602680), (PMID:8575294) RGD PMID:8575294 PMID:14602680 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728|MGI:98297 (PMID:14602680)
GO_REF:0000107 		RGD
Ensembl		 PMID:14602680 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:2684328 (PMID:14608380)
GO_REF:0000107 		RGD
Ensembl		 PMID:14608380 GO_REF:0000107 NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:108067|MGI:2150162 (PMID:11731457), (PMID:12724834), (PMID:12930780), (PMID:15930101)
GO_REF:0000107 		RGD
Ensembl		 PMID:11731457 PMID:12724834 PMID:12930780 PMID:15930101 GO_REF:0000107 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1341884|MGI:2149672 (PMID:18302773)
GO_REF:0000107 		RGD
Ensembl		 PMID:18302773 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO
IEA 		MGI:104853|MGI:104876|MGI:2447620 (PMID:18302773)
GO_REF:0000107 		RGD
Ensembl		 PMID:18302773 GO_REF:0000107 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857530|MGI:1857626 (PMID:7903600), (PMID:7903601)
GO_REF:0000107 		RGD
Ensembl		 PMID:7903600 PMID:7903601 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within TAS
ISO 		MGI:2150397 (PMID:11900462) RGD PMID:11900462 PMID:7915120 RGD:728593 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96204|MGI:96205 (PMID:8900279) RGD PMID:8900279 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd12 homeo box D12 acts_upstream_of_or_within ISO
IEA 		MGI:96203|MGI:96205 (PMID:8900279)
GO_REF:0000107 		RGD
Ensembl		 PMID:8900279 GO_REF:0000107 NCBI chr 3:59,577,677...59,578,798
Ensembl chr 3:59,577,677...59,578,798 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO
IEA 		MGI:1857397|MGI:1857871|MGI:96203|MGI:96204 (PMID:11850178), (PMID:8106170), (PMID:8900279)
GO_REF:0000107 		RGD
Ensembl		 PMID:8106170 PMID:8900279 PMID:11850178 GO_REF:0000107 NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857644 (PMID:9671585)
GO_REF:0000107 		RGD
Ensembl		 PMID:9671585 GO_REF:0000107 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Jpt2 Jupiter microtubule associated homolog 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:13,963,135...13,983,212
Ensembl chr10:13,963,137...13,983,170 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1347476|MGI:1857848 (PMID:10498685), (PMID:15930111) 		UniProt
Ensembl
RGD		 PMID:10498685 PMID:15930111 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 acts_upstream_of_or_within ISO (PMID:1633717) RGD PMID:1633717 NCBI chr 6:84,746,422...85,608,640
Ensembl chr 6:84,761,941...85,608,126 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:95843 (PMID:12930780)
GO_REF:0000107 		RGD
Ensembl		 PMID:12930780 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO
IEA 		MGI:1862000 (PMID:12397106)
GO_REF:0000107 		RGD
Ensembl		 PMID:12397106 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Nrg3 neuregulin 3 acts_upstream_of_or_within ISO
IEA 		MGI:1889610 (PMID:10723730)
GO_REF:0000107 		RGD
Ensembl		 PMID:10723730 GO_REF:0000107 NCBI chr16:14,229,270...15,352,505
Ensembl chr16:14,235,157...15,352,368 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856222 (PMID:11900462)
GO_REF:0000107 		RGD
Ensembl		 PMID:11900462 GO_REF:0000107 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857447 (PMID:9262482)
GO_REF:0000107 		RGD
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1856862 (PMID:13970082)
GO_REF:0000107 		RGD
Ensembl		 PMID:13970082 GO_REF:0000107 NCBI chr18:59,463,347...59,467,469
Ensembl chr18:59,463,737...59,467,431 		JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:106,047,221...106,050,331
Ensembl chr10:106,047,221...106,050,345 		JBrowse link
G Rnf111 ring finger protein 111 acts_upstream_of_or_within ISO MGI:2680166 (PMID:11298452) RGD PMID:11298452 NCBI chr 8:79,984,831...80,061,022
Ensembl chr 8:71,103,973...71,145,070 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000117
GO_REF:0000107
MGI:1857796|MGI:95729 (PMID:12231626), (PMID:14602680) 		UniProt
Ensembl
RGD		 PMID:12231626 PMID:14602680 GO_REF:0000024 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO MGI:1889778 (PMID:10589677) RGD PMID:10589677 NCBI chr14:15,099,415...15,396,832
Ensembl chr14:15,099,423...15,396,915 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:109344|MGI:2655195 (PMID:16530750), (PMID:16916509)
GO_REF:0000107 		RGD
Ensembl		 PMID:16530750 PMID:16916509 GO_REF:0000107 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:87912 (PMID:17849440) RGD PMID:17849440 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2176256 (PMID:15107405) 		GO_Central
Ensembl
RGD		 PMID:15107405 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within ISO
IEA 		MGI:3604658 (PMID:16179481)
GO_REF:0000107 		RGD
Ensembl		 PMID:16179481 GO_REF:0000107 NCBI chr 6:53,051,336...53,055,510
Ensembl chr 6:53,051,354...53,055,579 		JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 acts_upstream_of_or_within ISO MGI:3580631 (PMID:16452659) RGD PMID:16452659 NCBI chr20:5,026,366...5,056,659
Ensembl chr20:5,026,364...5,056,672 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:104686|MGI:2179190 (PMID:15385444), (PMID:15652707), (PMID:16399080) 		UniProt
RGD		 PMID:15385444 PMID:15652707 PMID:16399080 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2387851 (PMID:15289437) 		GO_Central
Ensembl
RGD		 PMID:15289437 GO_REF:0000033 GO_REF:0000107 NCBI chr12:36,686,344...36,739,253
Ensembl chr12:36,688,014...36,734,885 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA 		MGI:1934269 (PMID:10227294)
GO_REF:0000107 		RGD
Ensembl		 PMID:10227294 GO_REF:0000107 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1859373|MGI:1928812 (PMID:10804168), (PMID:10804169)
GO_REF:0000107 		RGD
Ensembl		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857799 (PMID:9389660) RGD PMID:9389660 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO
IEA 		(PMID:9070329)
GO_REF:0000107 		RGD
Ensembl		 PMID:9070329 GO_REF:0000107 NCBI chr 8:91,908,548...91,918,020
Ensembl chr 8:91,908,576...91,912,731 		JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO MGI:2180720 (PMID:11959836) RGD PMID:11959836 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A acts_upstream_of_or_within ISO
IEA 		MGI:3836420 (PMID:22939930)
GO_REF:0000107 		RGD
Ensembl		 PMID:22939930 GO_REF:0000107 NCBI chr 3:181,546,742...181,562,890
Ensembl chr 3:161,128,313...161,144,390 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:104903 (PMID:10964473)
GO_REF:0000107 		RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA 		MGI:107405|MGI:98658 (PMID:15004567), (PMID:18241853)
GO_REF:0000107 		RGD
Ensembl		 PMID:15004567 PMID:18241853 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1201414 (PMID:18241853) RGD PMID:18241853 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148590 (PMID:10662781)
GO_REF:0000107 		RGD
Ensembl		 PMID:10662781 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IEA 		(PMID:16434966)
GO_REF:0000107 		RGD
Ensembl		 PMID:16434966 GO_REF:0000107 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO
IEA 		MGI:88180 (PMID:10964473)
GO_REF:0000107 		RGD
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr  X:131,868,986...132,236,824
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO MGI:1341884 (PMID:15680351) RGD PMID:15680351 NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO
IEA 		MGI:1341800 (PMID:15680351)
GO_REF:0000107 		RGD
Ensembl		 PMID:15680351 GO_REF:0000107 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO
IEA 		MGI:2449177 (PMID:12490556)
GO_REF:0000107 		RGD
Ensembl		 PMID:12490556 GO_REF:0000107 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Lefty1 left right determination factor 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1201414 (PMID:15004567) 		GO_Central
Ensembl
RGD		 PMID:15004567 GO_REF:0000033 GO_REF:0000107 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Lefty2 Left-right determination factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:92,610,185...92,620,918
Ensembl chr13:92,615,360...92,619,880 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2443342 (PMID:10529425) 		UniProt
Ensembl
RGD		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:2158732 (PMID:11311163)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856621|MGI:99783 (PMID:10529425)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2447529 (PMID:12183370)
GO_REF:0000107 		RGD
Ensembl		 PMID:12183370 GO_REF:0000107 NCBI chr13:66,103,943...66,136,038
Ensembl chr13:63,554,862...63,583,099 		JBrowse link
G Six2 SIX homeobox 2 involved_in ISO
IEA 		(PMID:18321982)
GO_REF:0000107 		RGD
Ensembl		 PMID:18321982 GO_REF:0000107 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044914 (PMID:15155583) RGD PMID:15155583 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19841259) 		UniProt
Ensembl
RGD		 PMID:19841259 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902 (PMID:18028899) RGD PMID:18028899 NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3580390 (PMID:15870281)
GO_REF:0000107 		RGD
Ensembl		 PMID:15870281 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) RGD PMID:9054360 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO
IEA 		(PMID:28839193)
GO_REF:0000107 		RGD
Ensembl		 PMID:28839193 GO_REF:0000107 NCBI chr16:2,612,942...2,669,870
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:9207801) 		UniProt
Ensembl
RGD		 PMID:9207801 GO_REF:0000024 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
(PMID:9054360) 		Ensembl
RGD		 PMID:9054360 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:10452853), (PMID:16991118)
GO_REF:0000107 		RGD
Ensembl		 PMID:10452853 PMID:16991118 GO_REF:0000107 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:9916847)
MGI:102806|MGI:1095407|MGI:1857709|MGI:98728 (PMID:10452853), (PMID:15542835), (PMID:16845371), (PMID:16991118), (PMID:9242489)
GO_REF:0000107 		RGD
Ensembl		 PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 More... GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA 		MGI:1096359|MGI:1857891|MGI:2180721|MGI:2679699 (PMID:15652703), (PMID:15872003), (PMID:16368932), (PMID:17067568)
GO_REF:0000107 		RGD
Ensembl		 PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 GO_REF:0000107 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:108359 (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9847249 GO_REF:0000107 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:38,147,117...38,177,220 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA 		MGI:104621|MGI:1857484 (PMID:9374397), (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9374397 PMID:9847249 GO_REF:0000107 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:79,611,719...79,648,260 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arc activity-regulated cytoskeleton-associated protein acts_upstream_of_or_within ISO MGI:2386454 (PMID:10727859) RGD PMID:10727859 NCBI chr 7:106,555,968...106,559,697
Ensembl chr 7:106,555,785...106,559,378 		JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578634 (PMID:17855428)
GO_REF:0000107 		RGD
Ensembl		 PMID:17855428 GO_REF:0000107 NCBI chr17:15,990,412...15,993,887
Ensembl chr17:15,990,412...15,993,887 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158342 (PMID:15136140)
GO_REF:0000107 		RGD
Ensembl		 PMID:15136140 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO
IEA 		MGI:2158503|MGI:87912 (PMID:10772805), (PMID:15542835)
GO_REF:0000107 		RGD
Ensembl		 PMID:10772805 PMID:15542835 GO_REF:0000107 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:3823037|MGI:3841299 (PMID:18794365), (PMID:18974875)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794365 PMID:18974875 GO_REF:0000107 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3525505 (PMID:15542835)
GO_REF:0000107 		RGD
Ensembl		 PMID:15542835 GO_REF:0000107 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA 		MGI:2653120 (PMID:19754878)
GO_REF:0000107 		RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cdx1 caudal type homeo box 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154514|MGI:97858 (PMID:11784046), (PMID:7585967)
GO_REF:0000107 		RGD
Ensembl		 PMID:7585967 PMID:11784046 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO
IEA 		MGI:88362 (PMID:19853565)
GO_REF:0000107 		RGD
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 acts_upstream_of_or_within ISO
IEA 		MGI:88361 (PMID:19853565)
GO_REF:0000107 		RGD
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:2668337|MGI:4430218 (PMID:18849982), (PMID:19357712) RGD PMID:18849982 PMID:19357712 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO
IEA 		(PMID:9501024)
GO_REF:0000107 		RGD
Ensembl		 PMID:9501024 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:97451 (PMID:11412024) 		GO_Central
Ensembl
RGD		 PMID:11412024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cripto cripto, EGF-CFC family member involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (PMID:16399080) RGD PMID:16399080 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G Ctnnbip1 catenin, beta-interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3045424 (PMID:15148409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within ISO MGI:2183292|MGI:2679699 (PMID:17067568) RGD PMID:17067568 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 acts_upstream_of_or_within ISO
IEA 		MGI:1096359 (PMID:17067568)
GO_REF:0000107 		RGD
Ensembl		 PMID:17067568 GO_REF:0000107 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2148858|MGI:97490 (PMID:12196586), (PMID:15917450)
GO_REF:0000107 		RGD
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2387775 (PMID:11358868)
GO_REF:0000107 		RGD
Ensembl		 PMID:11358868 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:4346364 (PMID:19877275) RGD PMID:19877275 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA 		MGI:2449672|MGI:5544775 (PMID:10391213), (PMID:23918385)
GO_REF:0000107 		RGD
Ensembl		 PMID:10391213 PMID:23918385 GO_REF:0000107 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:22841643) RGD PMID:22841643 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276|MGI:3798847|MGI:95728 (PMID:15315762), (PMID:22841643)
GO_REF:0000107 		RGD
Ensembl		 PMID:15315762 PMID:22841643 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr14:19,412,944...19,429,364
Ensembl chr14:19,412,156...19,429,362 		JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO
IEA 		(PMID:16936074)
GO_REF:0000107 		RGD
Ensembl		 PMID:16936074 GO_REF:0000107 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1314872 (PMID:16537918)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537918 GO_REF:0000107 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO MGI:1314872 (PMID:16537918) RGD PMID:16537918 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:2670936 (PMID:15872003)
GO_REF:0000107 		RGD
Ensembl		 PMID:15872003 GO_REF:0000107 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069|MGI:96182 (PMID:10529420), (PMID:15367676) RGD PMID:10529420 PMID:15367676 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO
IEA 		MGI:96192|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,331,591...81,340,878
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96184|MGI:96207 (PMID:7913519), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:7913519 PMID:9441667 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Hoxa4 homeo box A4 acts_upstream_of_or_within ISO MGI:2150391|MGI:96185|MGI:96208 (PMID:7628700), (PMID:7918106) RGD PMID:7628700 PMID:7918106 NCBI chr 4:81,289,677...81,291,685
Ensembl chr 4:81,289,682...81,291,685 		JBrowse link
G Hoxa5 homeo box A5 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150397|MGI:3723623|MGI:96186|MGI:96196 (PMID:17417799), (PMID:17626057), (PMID:7901120), (PMID:9603431) 		GO_Central
RGD		 PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000033 NCBI chr 4:81,302,341...81,306,234
Ensembl chr 4:81,302,353...81,306,234 		JBrowse link
G Hoxa6 homeobox A6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150392|MGI:96187|MGI:96197 (PMID:17626057), (PMID:7918106) 		GO_Central
RGD		 PMID:7918106 PMID:17626057 GO_REF:0000033 NCBI chr 4:81,304,918...81,313,184
Ensembl chr 4:81,306,407...81,308,850 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within ISO
IEA 		MGI:96188 (PMID:9784603)
GO_REF:0000107 		RGD
Ensembl		 PMID:9784603 GO_REF:0000107 NCBI chr 4:81,315,730...81,317,629
Ensembl chr 4:81,314,625...81,317,659 		JBrowse link
G Hoxa9 homeobox A9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150411|MGI:96190|MGI:96199|MGI:96210 (PMID:17626057), (PMID:8625797), (PMID:9013929) 		GO_Central
RGD		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO
IEA 		MGI:96170|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10529420), (PMID:10885747)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529420 PMID:10885747 GO_REF:0000107 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:2151772|MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxb3 homeo box B3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (PMID:10885747), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:9441667 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,258,739...81,314,134
Ensembl chr10:81,299,357...81,313,107 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7628700), (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:7628700 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Hoxb5 homeo box B5 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2151484|MGI:96177|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96196 (PMID:10885747), (PMID:17626057), (PMID:7828847) 		GO_Central
RGD		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,269,372...81,271,580
Ensembl chr10:81,269,372...81,271,580 		JBrowse link
G Hoxb6 homeo box B6 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2151485|MGI:96178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190|MGI:96197 (PMID:10885747), (PMID:17626057), (PMID:7828847) 		GO_Central
RGD		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,258,726...81,267,458
Ensembl chr10:81,265,056...81,267,449 		JBrowse link
G Hoxb7 homeo box B7 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9784603) 		GO_Central
Ensembl
RGD		 PMID:9784603 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,252,616...81,256,034
Ensembl chr10:81,252,553...81,256,034 		JBrowse link
G Hoxb8 homeo box B8 acts_upstream_of_or_within ISO MGI:1934178|MGI:2683089|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190|MGI:96198|MGI:96209 (PMID:10559485), (PMID:10885747), (PMID:11311170), (PMID:14623233) RGD PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 NCBI chr10:81,248,313...81,251,261
Ensembl chr10:81,248,887...81,250,638 		JBrowse link
G Hoxb9 homeo box B9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2150429|MGI:96180|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96199|MGI:96210 (PMID:10885747), (PMID:17626057), (PMID:9013929) 		GO_Central
RGD		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000033 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within ISO
IEA 		MGI:1926422 (PMID:9420327)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420327 GO_REF:0000107 NCBI chr 7:134,058,640...134,065,479
Ensembl chr 7:134,058,640...134,064,800 		JBrowse link
G Hoxc4 homeo box C4 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:1857570|MGI:2150683 (PMID:8626021), (PMID:8660891)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:8626021 PMID:8660891 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,135,279...134,173,133
Ensembl chr 7:134,170,591...134,173,133 		JBrowse link
G Hoxc5 homeo box C5 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96177|MGI:96186 (PMID:17626057) 		GO_Central
Ensembl
RGD		 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,150,988...134,154,410
Ensembl chr 7:134,150,988...134,154,410 		JBrowse link
G Hoxc6 homeo box C6 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96178|MGI:96187 (PMID:17626057) 		GO_Central
Ensembl
RGD		 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,138,017...134,148,899
Ensembl chr 7:134,135,502...134,148,392 		JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within ISO
IEA 		MGI:2149030|MGI:96189|MGI:96209 (PMID:11311170)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311170 GO_REF:0000107 NCBI chr 7:134,127,937...134,130,503
Ensembl chr 7:134,127,913...134,130,503 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO
IEA 		MGI:2150685|MGI:96180|MGI:96190|MGI:96210 (PMID:17626057), (PMID:7547473)
GO_REF:0000107 		RGD
Ensembl		 PMID:7547473 PMID:17626057 GO_REF:0000107 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:134,118,817...134,121,492 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96192|MGI:96210 (PMID:10642795), (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:10642795 PMID:12869760 GO_REF:0000107 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12869760) RGD PMID:12869760 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd13 homeo box D13 acts_upstream_of_or_within ISO
IEA 		MGI:1857871 (PMID:8106170)
GO_REF:0000107 		RGD
Ensembl		 PMID:8106170 GO_REF:0000107 NCBI chr 3:59,570,647...59,573,963
Ensembl chr 3:59,570,646...59,573,963 		JBrowse link
G Hoxd3 homeo box D3 acts_upstream_of_or_within ISO
IEA 		MGI:1857959|MGI:96175|MGI:96184 (PMID:7910549), (PMID:7913519), (PMID:9441667)
GO_REF:0000107 		RGD
Ensembl		 PMID:7910549 PMID:7913519 PMID:9441667 GO_REF:0000107 NCBI chr 3:59,638,708...59,650,282
Ensembl chr 3:59,638,708...59,650,282 		JBrowse link
G Hoxd4 homeo box D4 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2151488|MGI:96176 (PMID:7628700), (PMID:7750651) 		GO_Central
Ensembl
RGD		 PMID:7628700 PMID:7750651 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,614,464...59,634,042
Ensembl chr 3:59,614,464...59,631,528 		JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within ISO MGI:2151815|MGI:96189|MGI:96198 (PMID:11311170) RGD PMID:11311170 NCBI chr 3:80,015,223...80,017,789
Ensembl chr 3:59,607,996...59,610,361 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150414|MGI:96180|MGI:96190|MGI:96199|MGI:96202 (PMID:10642795), (PMID:17626057), (PMID:8625797) 		GO_Central
Ensembl
RGD		 PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (PMID:16109169) RGD PMID:16109169 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527|MGI:3027342 (PMID:12701101), (PMID:15930098) RGD PMID:12701101 PMID:15930098 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:1861960 (PMID:10220415) RGD PMID:10220415 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:1932339 (PMID:15741318), (PMID:16618927)
GO_REF:0000107 		RGD
Ensembl		 PMID:15741318 PMID:16618927 GO_REF:0000107 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685) 		UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:15142971)
GO_REF:0000107 		RGD
Ensembl		 PMID:15142971 GO_REF:0000107 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1278315|MGI:1861309|MGI:2156191 (PMID:15142971), (PMID:16126904), (PMID:19795512) RGD PMID:15142971 PMID:16126904 PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:2388982 (PMID:12242306)
GO_REF:0000107 		RGD
Ensembl		 PMID:12242306 GO_REF:0000107 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169 (PMID:21465616) RGD PMID:21465616 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:97168 (PMID:21465616)
GO_REF:0000107 		RGD
Ensembl		 PMID:21465616 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:2148229 (PMID:16368089) RGD PMID:16368089 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676|MGI:2158732|MGI:2180793|MGI:2656539|MGI:3056345 (PMID:11311163), (PMID:11418863), (PMID:15004567), (PMID:15302604), (PMID:16496285)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579117|MGI:3579118 (PMID:15829524)
GO_REF:0000107 		RGD
Ensembl		 PMID:15829524 GO_REF:0000107 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:97451 (PMID:15105370)
GO_REF:0000107 		RGD
Ensembl		 PMID:15105370 GO_REF:0000107 NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:109448|MGI:1857502|MGI:2661067 (PMID:11412024), (PMID:12652306), (PMID:9501024) RGD PMID:9501024 PMID:11412024 PMID:12652306 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:95388 (PMID:12196586), (PMID:15917450)
GO_REF:0000107 		RGD
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2155612 (PMID:11566859)
GO_REF:0000107 		RGD
Ensembl		 PMID:11566859 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO MGI:1857633|MGI:1932339 (PMID:15741318), (PMID:8625838) RGD PMID:8625838 PMID:15741318 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO
IEA 		(PMID:18519639)
GO_REF:0000107 		RGD
Ensembl		 PMID:18519639 GO_REF:0000107 NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3847257 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:1931079|MGI:88360 (PMID:11784046), (PMID:8388780)
GO_REF:0000107 		RGD
Ensembl		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO MGI:1926913|MGI:99150 (PMID:11060235), (PMID:16624538) RGD PMID:11060235 PMID:16624538 NCBI chr20:4,832,013...4,835,516
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:3706668 (PMID:17215307)
GO_REF:0000107 		RGD
Ensembl		 PMID:17215307 GO_REF:0000107 NCBI chr 5:133,991,167...134,115,893
Ensembl chr 5:133,990,520...134,122,105 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 acts_upstream_of_or_within ISO MGI:96995|MGI:99161 (PMID:15741318) RGD PMID:15741318 NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078 (PMID:16467359)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:892014 (PMID:16467359)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796 (PMID:11118883)
GO_REF:0000107 		RGD
Ensembl		 PMID:11118883 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:1857691|MGI:2668416 (PMID:11418863), (PMID:12842913), (PMID:9529255) 		UniProt
RGD		 PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000024 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857691|MGI:2656539|MGI:2668393 (PMID:15215210)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215210 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2176256|MGI:2450929 (PMID:22987639)
GO_REF:0000107 		RGD
Ensembl		 PMID:22987639 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:104686|MGI:2179191 (PMID:15084464), (PMID:16399080) 		UniProt
RGD		 PMID:15084464 PMID:16399080 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:3042261|MGI:3042262|MGI:3042264 (PMID:15384171)
GO_REF:0000107 		RGD
Ensembl		 PMID:15384171 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:16845371)
GO_REF:0000107 		RGD
Ensembl		 PMID:16845371 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within ISO MGI:3721421 (PMID:17586487) RGD PMID:17586487 NCBI chr18:77,376,399...77,452,815
Ensembl chr18:77,377,394...77,453,509 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2388066 (PMID:19334287)
GO_REF:0000107 		RGD
Ensembl		 PMID:19334287 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857642 (PMID:18849982)
GO_REF:0000107 		RGD
Ensembl		 PMID:18849982 GO_REF:0000107 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2178826 (PMID:10431240) RGD PMID:10431240 NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		(PMID:15148409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1857617 (PMID:15073149), (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:15073149 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:1101770|MGI:2445451 (PMID:16624538)
GO_REF:0000107 		RGD
Ensembl		 PMID:16624538 GO_REF:0000107 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA 		MGI:2182708 (PMID:10835630)
GO_REF:0000107 		RGD
Ensembl		 PMID:10835630 GO_REF:0000107 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO MGI:97359 (PMID:16496285) RGD PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98956 (PMID:11029008) RGD PMID:11029008 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839484 (PMID:20630950)
GO_REF:0000107 		RGD
Ensembl		 PMID:20630950 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:11029008)
GO_REF:0000107 		RGD
Ensembl		 PMID:11029008 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3513254 (PMID:17531978) RGD PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO
IEA 		(PMID:11948913)
GO_REF:0000107 		RGD
Ensembl		 PMID:11948913 GO_REF:0000107 NCBI chr 9:76,329,882...76,343,523
Ensembl chr 9:76,329,882...76,343,523 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO MGI:1857507 (PMID:7903221) RGD PMID:7903221 NCBI chr20:21,050,149...21,055,201
Ensembl chr20:21,051,277...21,055,562 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:1856419 (PMID:7925021)
GO_REF:0000107 		RGD
Ensembl		 PMID:7925021 GO_REF:0000107 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zic2 Zic family member 2 involved_in ISO MGI:106676 (PMID:17490632) RGD PMID:17490632 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:106679 (PMID:17490632) RGD PMID:17490632 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 acts_upstream_of_or_within ISO (PMID:24531968) RGD PMID:24531968 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:23431145) RGD PMID:23431145 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Dmrta2 DMRT-like family A2 acts_upstream_of_or_within ISO
IEA 		MGI:5527461 (PMID:22923088), (PMID:23056351)
GO_REF:0000107 		RGD
Ensembl		 PMID:22923088 PMID:23056351 GO_REF:0000107 NCBI chr 5:124,805,883...124,811,694
Ensembl chr 5:124,805,883...124,811,630 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:95388 (PMID:15147765)
GO_REF:0000107 		RGD
Ensembl		 PMID:15147765 GO_REF:0000107 NCBI chr 4:117,725,148...117,741,616
Ensembl chr 4:117,725,155...117,741,613 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2148858|MGI:95387 (PMID:12764040), (PMID:15147765)
GO_REF:0000107 		RGD
Ensembl		 PMID:12764040 PMID:15147765 GO_REF:0000107 NCBI chr 1:258,626,584...258,633,594
Ensembl chr 1:258,626,584...258,633,594 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:30186101)
GO_REF:0000107
MGI:2176173|MGI:3802572 (PMID:23431145) 		RGD
Ensembl		 PMID:23431145 PMID:30186101 GO_REF:0000107 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 acts_upstream_of_or_within ISO MGI:3521756 (PMID:17828260) RGD PMID:17828260 NCBI chr 2:8,040,375...8,050,123
Ensembl chr 2:8,040,377...8,050,123 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1856155 (PMID:12764040), (PMID:23431145)
GO_REF:0000107
(PMID:30186101) 		RGD
Ensembl		 PMID:12764040 PMID:23431145 PMID:30186101 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Tra2b transformer 2 beta acts_upstream_of_or_within ISO
IEA 		MGI:2176173|MGI:4450919 (PMID:24586484)
GO_REF:0000107 		RGD
Ensembl		 PMID:24586484 GO_REF:0000107 NCBI chr11:78,788,880...78,807,252
Ensembl chr11:78,788,884...78,807,249 		JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1861919 (PMID:12001066) RGD PMID:12001066 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO MGI:1857008 (PMID:12001066) RGD PMID:12001066 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO
IEA 		MGI:1933734 (PMID:12001066)
GO_REF:0000107 		RGD
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857877 (PMID:12001066)
GO_REF:0000107 		RGD
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:1860298 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
detection of nodal flow term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:31887266) RGD PMID:31887266 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
determination of bilateral symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857891 (PMID:15731404)
GO_REF:0000107 		RGD
Ensembl		 PMID:15731404 GO_REF:0000107 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944405)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO
IEA 		(PMID:22581229)
GO_REF:0000107 		RGD
Ensembl		 PMID:22581229 GO_REF:0000107 NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:3722325 (PMID:18043505) 		UniProt
Ensembl
RGD		 PMID:18043505 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:9660951)
GO_REF:0000107 		RGD
Ensembl		 PMID:9660951 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) RGD PMID:9660951 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:23063586)
GO_REF:0000107 		RGD
Ensembl		 PMID:23063586 GO_REF:0000107 NCBI chr13:86,778,543...86,871,509
Ensembl chr13:86,778,500...86,871,615 		JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:9660951)
GO_REF:0000107 		RGD
Ensembl		 PMID:9660951 GO_REF:0000107 NCBI chr 5:151,318,752...151,329,948
Ensembl chr 5:151,318,754...151,338,719 		JBrowse link
determination of heart left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (PMID:15750185) RGD PMID:15750185 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in ISO
IBA 		(PMID:15466485)
GO_REF:0000033 		RGD
GO_Central		 PMID:15466485 GO_REF:0000033 NCBI chr19:23,330,917...23,340,486
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA 		(PMID:11076684)
GO_REF:0000107 		RGD
Ensembl		 PMID:11076684 GO_REF:0000107 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857639 (PMID:9576835)
GO_REF:0000107 		RGD
Ensembl		 PMID:9576835 GO_REF:0000107 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:23063620)
GO_REF:0000107
MGI:3722325 (PMID:18043505)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18043505 PMID:23063620 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in ISO
IEA 		(PMID:26437028)
GO_REF:0000107 		RGD
Ensembl		 PMID:26437028 GO_REF:0000107 NCBI chr 1:188,480,186...188,485,855
Ensembl chr 1:188,480,186...188,485,855 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO MGI:5445347 (PMID:25192045) RGD PMID:25192045 NCBI chr 8:20,520,898...20,534,499
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:1856184 (PMID:10349618)
GO_REF:0000107 		RGD
Ensembl		 PMID:10349618 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in ISO (PMID:15466485) RGD PMID:15466485 NCBI chr19:23,330,917...23,340,486
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO
IEA 		(PMID:17507406)
GO_REF:0000107 		RGD
Ensembl		 PMID:17507406 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO 		GO_REF:0000107
(PMID:11517919) 		Ensembl
RGD		 PMID:11517919 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad2 SMAD family member 2 involved_in ISO
IEA 		(PMID:17239842)
GO_REF:0000107 		RGD
Ensembl		 PMID:17239842 GO_REF:0000107 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11517919)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1862004 (PMID:24585447) RGD PMID:24585447 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
determination of left/right asymmetry in nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein, axonemal, heavy chain 11 acts_upstream_of_or_within ISO MGI:1856917 (PMID:18414654) RGD PMID:18414654 NCBI chr 6:138,839,175...139,155,554
Ensembl chr 6:138,839,177...139,155,536 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:11959836) RGD PMID:11959836 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of left/right symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within ISO
IEA 		MGI:1931734 (PMID:15531373)
GO_REF:0000107 		RGD
Ensembl		 PMID:15531373 GO_REF:0000107 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvr1c activin A receptor type 1C NOT|acts_upstream_of_or_within ISO MGI:3512292 (PMID:15485907) RGD PMID:15485907 NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327 		JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:16991118)
GO_REF:0000107 		RGD
Ensembl		 PMID:16991118 GO_REF:0000107 NCBI chr 3:33,204,961...33,292,673
Ensembl chr 3:33,205,523...33,289,968 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO
IEA 		MGI:102806|MGI:1857709 (PMID:16991118), (PMID:9242489)
GO_REF:0000107 		RGD
Ensembl		 PMID:9242489 PMID:16991118 GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Alg5 ALG5, dolichyl-phosphate beta-glucosyltransferase acts_upstream_of_or_within ISO
IEA 		MGI:3578146 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr 2:138,936,998...138,951,228
Ensembl chr 2:138,936,993...138,951,216 		JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 5:61,309,183...61,350,596
Ensembl chr 5:61,309,183...61,350,596 		JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr14:79,879,482...79,930,778
Ensembl chr14:79,879,533...79,930,778 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Bicc1 BicC family RNA binding protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr20:17,449,639...17,686,775
Ensembl chr20:17,449,560...17,686,776 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO
IEA 		MGI:5708063 (PMID:24947469), (PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:24947469 PMID:25807483 GO_REF:0000107 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:5316786 (PMID:25807483), (PMID:28289722)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 PMID:28289722 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit acts_upstream_of_or_within ISO MGI:97359 (PMID:28182636) RGD PMID:28182636 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 involved_in ISO (PMID:26531781) RGD PMID:26531781 NCBI chr18:67,884,651...67,955,873
Ensembl chr18:67,869,855...67,952,318 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2179530 (PMID:10521397), (PMID:25807483) 		GO_Central
Ensembl
RGD		 PMID:10521397 PMID:25807483 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Ciroz ciliated left-right organizer protein containing ZP-N domains acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 5:159,075,217...159,110,642
Ensembl chr 5:159,075,343...159,105,369 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:15750185) 		UniProt
RGD		 PMID:15750185 GO_REF:0000024 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cripto cripto, EGF-CFC family member involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:119,803,182...119,808,714
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Daam2 dishevelled associated activator of morphogenesis 2 acts_upstream_of_or_within ISO
IEA 		MGI:4841108 (PMID:24091014)
GO_REF:0000107 		RGD
Ensembl		 PMID:24091014 GO_REF:0000107 NCBI chr 9:11,428,913...11,546,982
Ensembl chr 9:11,428,724...11,545,497 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 acts_upstream_of_or_within ISO MGI:3056132|MGI:97359 (PMID:15466485) RGD PMID:15466485 NCBI chr19:23,330,917...23,340,486
Ensembl chr19:23,334,164...23,339,589 		JBrowse link
G Daw1 dynein assembly factor with WD repeats 1 acts_upstream_of_or_within ISO MGI:5431501 (PMID:25807483), (PMID:28289722) RGD PMID:25807483 PMID:28289722 NCBI chr 9:84,435,552...84,472,632
Ensembl chr 9:84,435,552...84,472,635 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2429759|MGI:2448055 (PMID:12421714), (PMID:15755804) RGD PMID:12421714 PMID:15755804 NCBI chr13:94,720,928...94,866,695
Ensembl chr13:94,720,928...94,866,702 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1861919 (PMID:12730124) RGD PMID:12730124 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Dnaaf3 dynein, axonemal, assembly factor 3 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 1:69,291,300...69,299,365
Ensembl chr 1:69,291,454...69,299,344 		JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:23872636)
(PMID:25807483)
GO_REF:0000033 		UniProt
Ensembl
RGD
GO_Central		 PMID:23872636 PMID:25807483 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:73,696,394...73,711,315
Ensembl chr 8:73,698,103...73,711,292 		JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 acts_upstream_of_or_within ISO (PMID:12142464), (PMID:18022865), (PMID:22184204), (PMID:22499950)
MGI:1856917|MGI:2152963|MGI:4821828 (PMID:10556073), (PMID:25807483), (PMID:27340223), (PMID:9353118) 		RGD PMID:9353118 PMID:10556073 PMID:12142464 PMID:18022865 PMID:22184204 More... MGI:48750 NCBI chr 6:138,839,175...139,155,554
Ensembl chr 6:138,839,177...139,155,536 		JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 acts_upstream_of_or_within ISO
IEA 		(PMID:11788826), (PMID:17515466), (PMID:22499950)
GO_REF:0000107
MGI:2180081|MGI:5285078 (PMID:11912187), (PMID:25807483), (PMID:28289722) 		RGD
Ensembl		 PMID:11788826 PMID:11912187 PMID:17515466 PMID:22499950 PMID:25807483 More... GO_REF:0000107 NCBI chr 2:78,937,788...79,255,551
Ensembl chr 2:78,937,800...79,254,890 		JBrowse link
G Dnai1 dynein, axonemal, intermediate chain 1 acts_upstream_of_or_within ISO
IEA 		(PMID:11231901), (PMID:17515466), (PMID:22499950)
GO_REF:0000107
(PMID:25807483) 		RGD
Ensembl		 PMID:11231901 PMID:17515466 PMID:22499950 PMID:25807483 GO_REF:0000107 NCBI chr 5:56,730,179...56,800,926
Ensembl chr 5:56,730,179...56,800,925 		JBrowse link
G Dnai2 dynein, axonemal, intermediate chain 2 acts_upstream_of_or_within ISO
IEA 		(PMID:18950741)
GO_REF:0000107 		RGD
Ensembl		 PMID:18950741 GO_REF:0000107 NCBI chr10:99,759,966...99,793,379
Ensembl chr10:99,759,966...99,793,378 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO
IEA 		MGI:4262238 (PMID:21746835)
GO_REF:0000107 		RGD
Ensembl		 PMID:21746835 GO_REF:0000107 NCBI chr 1:244,408,766...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Drc1 dynein regulatory complex subunit 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 6:26,025,004...26,059,438
Ensembl chr 6:26,025,005...26,059,414 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578144 (PMID:15755804), (PMID:16061793), (PMID:16229832), (PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:25807483 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 acts_upstream_of_or_within ISO
IEA 		MGI:3505858 (PMID:15371312)
GO_REF:0000107 		RGD
Ensembl		 PMID:15371312 GO_REF:0000107 NCBI chr 6:9,992,537...10,025,355
Ensembl chr 6:9,992,541...10,025,336 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647 (PMID:15329346)
GO_REF:0000107 		RGD
Ensembl		 PMID:15329346 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1857843 (PMID:10411502)
GO_REF:0000107 		RGD
Ensembl		 PMID:10411502 GO_REF:0000107 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA 		(PMID:11493558)
GO_REF:0000107 		RGD
Ensembl		 PMID:11493558 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2387775 (PMID:12642485)
GO_REF:0000107 		RGD
Ensembl		 PMID:12642485 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Foxj1 forkhead box J1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25807483)
(PMID:31630787) 		UniProt
Ensembl
RGD		 PMID:25807483 PMID:31630787 GO_REF:0000024 GO_REF:0000107 NCBI chr10:101,566,299...101,570,370
Ensembl chr10:101,566,304...101,570,237 		JBrowse link
G Galnt11 polypeptide N-acetylgalactosaminyltransferase 11 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:9,837,629...9,871,141
Ensembl chr 4:9,837,629...9,871,140 		JBrowse link
G Gas8 growth arrest specific 8 acts_upstream_of_or_within ISO MGI:3870680 (PMID:27472056) RGD PMID:27472056 NCBI chr19:51,552,770...51,572,323
Ensembl chr19:51,552,816...51,572,305 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:2682066 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA 		(PMID:15930098)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift74 intraflagellar transport 74 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 5:109,460,372...109,563,839
Ensembl chr 5:109,474,255...109,563,833 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1859153|MGI:3027342 (PMID:10804177), (PMID:15755804) RGD PMID:10804177 PMID:15755804 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:1861960|MGI:3580660 (PMID:10220415), (PMID:15755804) RGD PMID:10220415 PMID:15755804 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lefty1 left right determination factor 1 involved_in ISO
IEA 		(PMID:9708732)
GO_REF:0000107 		RGD
Ensembl		 PMID:9708732 GO_REF:0000107 NCBI chr13:92,649,226...92,659,722
Ensembl chr13:92,656,323...92,659,720 		JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO
IEA 		MGI:4410614|MGI:4887578 (PMID:19776033), (PMID:21045211)
GO_REF:0000107 		RGD
Ensembl		 PMID:19776033 PMID:21045211 GO_REF:0000107 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:26429889), (PMID:26437028)
GO_REF:0000107
(PMID:26437028)
(PMID:25807483) 		RGD
Ensembl		 PMID:25807483 PMID:26429889 PMID:26437028 GO_REF:0000107 NCBI chr 1:188,480,186...188,485,855
Ensembl chr 1:188,480,186...188,485,855 		JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 4:119,817,788...119,842,503
Ensembl chr 4:118,260,252...118,285,704 		JBrowse link
G Nek8 NIMA-related kinase 8 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr10:63,060,868...63,073,546
Ensembl chr10:63,061,253...63,072,416 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1931319 (PMID:15329346)
GO_REF:0000107 		RGD
Ensembl		 PMID:15329346 GO_REF:0000107 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO
IEA 		MGI:4151115 (PMID:21746835)
GO_REF:0000107 		RGD
Ensembl		 PMID:21746835 GO_REF:0000107 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676|MGI:1344365|MGI:2158732|MGI:2180793|MGI:2388004|MGI:2443893 (PMID:11311163), (PMID:12231623), (PMID:12642485), (PMID:12654299), (PMID:15466485), (PMID:16496285), (PMID:28182636)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 PMID:12231623 PMID:12642485 PMID:12654299 PMID:15466485 More... GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857230|MGI:1857877 (PMID:12730124), (PMID:7789282)
GO_REF:0000107 		RGD
Ensembl		 PMID:7789282 PMID:12730124 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:1933205 (PMID:12730124)
GO_REF:0000107 		RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:3053092 (PMID:17884984), (PMID:20350929), (PMID:22357932)
GO_REF:0000107 		RGD
Ensembl		 PMID:17884984 PMID:20350929 PMID:22357932 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA
IBA 		(PMID:18371931)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18371931 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 acts_upstream_of_or_within ISO
IEA 		(PMID:23849778)
GO_REF:0000107
MGI:5311373 (PMID:23849778), (PMID:25807483) 		RGD
Ensembl		 PMID:23849778 PMID:25807483 GO_REF:0000107 NCBI chr17:55,216,877...55,409,872
Ensembl chr17:55,218,991...55,409,399 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO (PMID:25192045)
MGI:5548687 (PMID:25807483), (PMID:31383820) 		RGD PMID:25192045 PMID:25807483 PMID:31383820 NCBI chr 8:20,520,898...20,534,499
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 1:214,837,847...215,267,626
Ensembl chr 1:214,837,927...215,267,600 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO
IEA 		MGI:97359 (PMID:10809672)
GO_REF:0000107 		RGD
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr 1:128,839,742...129,038,087
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
G Pierce1 piercer of microtubule wall 1 acts_upstream_of_or_within
involved_in 		ISO MGI:4133392 (PMID:27305836)
(PMID:34715025) 		RGD PMID:27305836 PMID:34715025 NCBI chr 3:11,797,031...11,801,568
Ensembl chr 3:11,797,031...11,801,568 		JBrowse link
G Pierce2 piercer of microtubule wall 2 involved_in ISO (PMID:34715025) RGD PMID:34715025 NCBI chr 8:73,715,383...73,719,849
Ensembl chr 8:73,715,383...73,719,849 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within
involved_in 		ISO MGI:1857844|MGI:1857846|MGI:1857880|MGI:2136268|MGI:2384494|MGI:2445428 (PMID:10498698), (PMID:10499586), (PMID:10572050), (PMID:11493526), (PMID:12397115), (PMID:24091014)
(PMID:9708732) 		RGD PMID:9708732 PMID:10498698 PMID:10499586 PMID:10572050 PMID:11493526 More... NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel acts_upstream_of_or_within ISO MGI:2676373 (PMID:12062060) RGD PMID:12062060 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Pskh1 protein serine kinase H1 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr19:33,794,919...33,827,040
Ensembl chr19:33,794,935...33,827,032 		JBrowse link
G Rfx3 regulatory factor X3 acts_upstream_of_or_within ISO
IEA 		MGI:3045792 (PMID:15121860)
GO_REF:0000107 		RGD
Ensembl		 PMID:15121860 GO_REF:0000107 NCBI chr 1:225,449,872...225,709,622
Ensembl chr 1:225,456,187...225,709,402 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3513254 (PMID:17531978) RGD PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rttn rotatin acts_upstream_of_or_within ISO
IEA 		MGI:2674124 (PMID:11900971)
GO_REF:0000107 		RGD
Ensembl		 PMID:11900971 GO_REF:0000107 NCBI chr18:82,220,999...82,398,334
Ensembl chr18:82,221,050...82,398,333 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796 (PMID:10385121), (PMID:10411502), (PMID:10500184)
GO_REF:0000107 		RGD
Ensembl		 PMID:10385121 PMID:10411502 PMID:10500184 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2137553|MGI:2176255 (PMID:12421714), (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:12421714 PMID:15755804 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:128,520,837...128,573,732
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:3512046 (PMID:16155214)
GO_REF:0000107 		RGD
Ensembl		 PMID:16155214 GO_REF:0000107 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA 		(PMID:25807483)
GO_REF:0000107 		RGD
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179191 (PMID:16556915) 		UniProt
RGD		 PMID:16556915 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3652354 (PMID:16705179)
GO_REF:0000107 		RGD
Ensembl		 PMID:16705179 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:31887266) RGD PMID:31887266 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
G Tmem67 transmembrane protein 67 acts_upstream_of_or_within ISO (PMID:25807483) RGD PMID:25807483 NCBI chr 5:25,536,458...25,589,378
Ensembl chr 5:25,536,458...25,589,334 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857489 (PMID:16291790)
GO_REF:0000107 		RGD
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1857617 (PMID:24091014)
GO_REF:0000107 		RGD
Ensembl		 PMID:24091014 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within 		ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (PMID:15384171), (PMID:16496285) 		RGD PMID:9354794 PMID:15384171 PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944405)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of pancreatic left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19944405) 		Ensembl
RGD		 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) RGD PMID:9354794 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:18371931)
GO_REF:0000107 		RGD
Ensembl		 PMID:18371931 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:94,940,311...94,967,920
Ensembl chr13:94,939,741...94,967,920 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA 		(PMID:10330403)
GO_REF:0000107 		RGD
Ensembl		 PMID:10330403 GO_REF:0000107 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Axin2 axin 2 IDA RGD PMID:9566905 RGD:68736 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2181295 (PMID:12923052)
GO_REF:0000107 		RGD
Ensembl		 PMID:12923052 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148594|MGI:2158470 (PMID:12923052)
GO_REF:0000107 		RGD
Ensembl		 PMID:12923052 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mdfi MyoD family inhibitor involved_in ISO (PMID:11238923) RGD PMID:11238923 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1934347 (PMID:10588713)
GO_REF:0000107 		RGD
Ensembl		 PMID:10588713 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Senp2 SUMO specific peptidase 2 IDA RGD PMID:10944533 RGD:1299408 NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:9192640) 		Ensembl
RGD		 PMID:9192640 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2159246|MGI:2388160 (PMID:11830578), (PMID:11830579)
GO_REF:0000107 		RGD
Ensembl		 PMID:11830578 PMID:11830579 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2450902|MGI:2450903 (PMID:12569130) RGD PMID:12569130 NCBI chr10:88,680,198...88,724,170
Ensembl chr10:88,680,248...88,724,099 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:15218525)
GO_REF:0000107 		RGD
Ensembl		 PMID:15218525 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:108075|MGI:95728|MGI:95729|MGI:99833 (PMID:28817564) RGD PMID:28817564 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826 		JBrowse link
G Cplane2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within ISO MGI:6887372|MGI:6887373 (PMID:29038301) RGD PMID:29038301 NCBI chr 5:153,515,507...153,516,455
Ensembl chr 5:153,515,376...153,522,508 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO
IEA 		MGI:107689|MGI:3042750|MGI:3775614|MGI:95728 (PMID:18003640), (PMID:18590716)
GO_REF:0000107 		RGD
Ensembl		 PMID:18003640 PMID:18590716 GO_REF:0000107 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO
IEA 		MGI:1347476 (PMID:23383217)
GO_REF:0000107 		RGD
Ensembl		 PMID:23383217 GO_REF:0000107 NCBI chr 6:80,838,380...80,871,195
Ensembl chr 6:75,103,503...75,136,188 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1347472|MGI:95841 (PMID:18590716), (PMID:23383217), (PMID:9226455) RGD PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070|MGI:98297 (PMID:17504940), (PMID:17504941) RGD PMID:17504940 PMID:17504941 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509|MGI:2145349|MGI:2442827|MGI:95729 (PMID:17395647), (PMID:18590716), (PMID:19286674), (PMID:20159594), (PMID:28817564), (PMID:9247260) RGD PMID:9247260 PMID:17395647 PMID:18590716 PMID:19286674 PMID:20159594 More... NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:2145349|MGI:2442827|MGI:95728 (PMID:17395647), (PMID:20159594), (PMID:28817564) RGD PMID:17395647 PMID:20159594 PMID:28817564 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gorab golgin, RAB6-interacting acts_upstream_of_or_within ISO (PMID:26967474) RGD PMID:26967474 NCBI chr13:75,745,678...75,762,307
Ensembl chr13:75,745,680...75,762,298 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1347476 (PMID:9226455)
GO_REF:0000107 		RGD
Ensembl		 PMID:9226455 GO_REF:0000107 NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:123,388,072...123,390,111 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:2443231 (PMID:22689656) RGD PMID:22689656 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within
involved_in 		ISO MGI:1341070|MGI:1861960|MGI:95728 (PMID:18590716), (PMID:19286674)
(PMID:21209331) 		RGD PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO MGI:4887578 (PMID:21045211) RGD PMID:21045211 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) RGD PMID:18590716 NCBI chr 4:5,866,506...5,871,465
Ensembl chr 4:5,866,506...5,871,465 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO
IEA 		(PMID:18590716)
GO_REF:0000107 		RGD
Ensembl		 PMID:18590716 GO_REF:0000107 NCBI chr 5:151,996,368...152,098,023
Ensembl chr 5:151,999,092...152,097,979 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO MGI:97760 (PMID:22007132) RGD PMID:22007132 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO MGI:97592 (PMID:22007132) RGD PMID:22007132 NCBI chr 2:235,636,878...235,726,928
Ensembl chr 2:235,636,885...235,726,198 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284 (PMID:10557208)
GO_REF:0000107 		RGD
Ensembl		 PMID:10557208 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208) RGD PMID:10557208 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857447 (PMID:9262482)
GO_REF:0000107 		RGD
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) RGD PMID:7720556 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO
IEA 		MGI:6393918 (PMID:30177510)
GO_REF:0000107 		RGD
Ensembl		 PMID:30177510 GO_REF:0000107 NCBI chr 5:135,975,739...136,198,017
Ensembl chr 5:130,739,183...130,961,418 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:95655 (PMID:17442700), (PMID:17504941), (PMID:18590716)
GO_REF:0000107
(PMID:21209331) 		RGD
Ensembl		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2176255 (PMID:18590716)
GO_REF:0000107 		RGD
Ensembl		 PMID:18590716 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:95728|MGI:95729 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:3716885 (PMID:16357211)
GO_REF:0000107 		RGD
Ensembl		 PMID:16357211 GO_REF:0000107 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:35353806) RGD PMID:35353806 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO MGI:4129326 (PMID:21945076) RGD PMID:21945076 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2388066|MGI:3664273 (PMID:19223390), (PMID:19286674), (PMID:19334287) 		Ensembl
RGD		 PMID:19223390 PMID:19286674 PMID:19334287 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:1932386|MGI:5315748 (PMID:22689656) RGD PMID:22689656 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857489 (PMID:8299937)
GO_REF:0000107 		RGD
Ensembl		 PMID:8299937 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Acvr1 activin A receptor type 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:2449944 (PMID:12645927) RGD PMID:12645927 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856035 (PMID:18316368)
GO_REF:0000107 		RGD
Ensembl		 PMID:18316368 GO_REF:0000107 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Bmp1 bone morphogenetic protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:45,551,603...45,595,862
Ensembl chr15:45,551,603...45,595,776 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:107191 (PMID:15673568)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:15673568 GO_REF:0000033 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:1338938 (PMID:15673568)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:15673568 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Chrd chordin involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2157350 (PMID:12810603) 		GO_Central
RGD		 PMID:12810603 GO_REF:0000033 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567|MGI:2176173 (PMID:15708565)
GO_REF:0000107 		RGD
Ensembl		 PMID:15708565 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2448055 (PMID:15755804) RGD PMID:15755804 NCBI chr13:94,720,928...94,866,695
Ensembl chr13:94,720,928...94,866,702 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO
IEA 		MGI:105373|MGI:3578144|MGI:95729|MGI:98297 (PMID:15755804), (PMID:16061793), (PMID:16229832), (PMID:21552265)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 NCBI chr 8:4,189,067...4,412,183
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857637 (PMID:15110048)
GO_REF:0000107 		RGD
Ensembl		 PMID:15110048 GO_REF:0000107 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:8684466), (PMID:9362463)
GO_REF:0000107 		RGD
Ensembl		 PMID:8684466 PMID:9362463 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:245,189,732...245,191,973
Ensembl chr 1:245,189,736...245,192,007 		JBrowse link
G Fgf8 fibroblast growth factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO
IEA 		MGI:3042750 (PMID:15105374)
GO_REF:0000107 		RGD
Ensembl		 PMID:15105374 GO_REF:0000107 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (PMID:10498685) RGD PMID:10498685 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1857771|MGI:1932522 (PMID:14566948), (PMID:15893304) RGD PMID:14566948 PMID:15893304 NCBI chr 6:66,674,797...66,677,611
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:3711070 (PMID:17504940) RGD PMID:17504940 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:16342201)
GO_REF:0000107 		RGD
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727 (PMID:16342201) RGD PMID:16342201 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856275|MGI:1856276 (PMID:12435629), (PMID:14723851), (PMID:16571630)
GO_REF:0000107 		RGD
Ensembl		 PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Hhip Hedgehog-interacting protein acts_upstream_of_or_within ISO MGI:105373 (PMID:15576403) RGD PMID:15576403 NCBI chr19:27,863,684...27,952,528
Ensembl chr19:27,863,213...27,952,528 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:11493536)
GO_REF:0000107 		RGD
Ensembl		 PMID:11493536 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626|MGI:96183 (PMID:10230789)
GO_REF:0000107 		RGD
Ensembl		 PMID:10230789 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:96174 (PMID:10230789)
GO_REF:0000107 		RGD
Ensembl		 PMID:10230789 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,318,026...81,320,192 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:11493536) RGD PMID:11493536 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529|MGI:98297 (PMID:15755804), (PMID:21552265) RGD PMID:15755804 PMID:21552265 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:108075|MGI:2682066 (PMID:14603322), (PMID:15755804), (PMID:16061793), (PMID:21552265)
GO_REF:0000107 		RGD
Ensembl		 PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA 		(PMID:15930098)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:3027342 (PMID:15755804), (PMID:15930098) RGD PMID:15755804 PMID:15930098 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:3580660 (PMID:15755804) RGD PMID:15755804 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1347476 (PMID:10498685) 		UniProt
Ensembl
RGD		 PMID:10498685 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1890208 (PMID:11165475), (PMID:14566948)
GO_REF:0000107 		RGD
Ensembl		 PMID:11165475 PMID:14566948 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2385819 (PMID:18037398)
GO_REF:0000107 		RGD
Ensembl		 PMID:18037398 GO_REF:0000107 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta involved_in ISO (PMID:10767331) RGD PMID:10767331 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3621893|MGI:3707955 (PMID:16207730), (PMID:17119023)
GO_REF:0000107 		RGD
Ensembl		 PMID:16207730 PMID:17119023 GO_REF:0000107 NCBI chr 3:77,429,600...77,483,593
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Nog noggin involved_in IEA
ISO 		GO_REF:0000107
(PMID:7666191) 		Ensembl
RGD		 PMID:7666191 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1857063 (PMID:8155581)
GO_REF:0000107 		RGD
Ensembl		 PMID:8155581 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2661067 (PMID:12652306) RGD PMID:12652306 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:3522498 (PMID:16423343)
GO_REF:0000107 		RGD
Ensembl		 PMID:16423343 GO_REF:0000107 NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:2156741|MGI:3521718 (PMID:15548580), (PMID:15878992)
GO_REF:0000107 		RGD
Ensembl		 PMID:15548580 PMID:15878992 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856842|MGI:3521736 (PMID:12183375), (PMID:15459176)
GO_REF:0000107 		RGD
Ensembl		 PMID:12183375 PMID:15459176 GO_REF:0000107 NCBI chr10:35,271,959...35,274,434
Ensembl chr10:35,271,973...35,274,434 		JBrowse link
G Ptch1 patched 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1341847 (PMID:15576403) 		UniProt
Ensembl
RGD		 PMID:15576403 GO_REF:0000024 GO_REF:0000107 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:1932386 (PMID:21552265) 		UniProt
Ensembl
RGD		 PMID:21552265 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2137553|MGI:2176173|MGI:2176256 (PMID:15755804), (PMID:16571630)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 PMID:16571630 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:2684137 (PMID:14597661)
GO_REF:0000107 		RGD
Ensembl		 PMID:14597661 GO_REF:0000107 NCBI chr 6:139,816,258...139,818,865
Ensembl chr 6:139,814,819...139,823,168
Ensembl chr 6:139,814,819...139,823,168 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO
IEA 		MGI:3580099 (PMID:15901664)
GO_REF:0000107 		RGD
Ensembl		 PMID:15901664 GO_REF:0000107 NCBI chr 8:23,200,104...23,258,218
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3698004 (PMID:17082251)
GO_REF:0000107 		RGD
Ensembl		 PMID:17082251 GO_REF:0000107 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tll1 tolloid-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:25,509,146...25,710,330
Ensembl chr16:25,509,146...25,709,543 		JBrowse link
G Tll2 tolloid-like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:239,912,648...240,028,168
Ensembl chr 1:239,915,508...240,028,120 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO
IEA 		MGI:1857704 (PMID:7885472), (PMID:9362463)
GO_REF:0000107 		RGD
Ensembl		 PMID:7885472 PMID:9362463 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) RGD PMID:11118896 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO (PMID:11118896), (PMID:11401399) RGD PMID:11118896 PMID:11401399 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in IDA PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162 		JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:7586755) 		Ensembl
RGD		 PMID:7586755 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:9230313)
GO_REF:0000107 		RGD
Ensembl		 PMID:9230313 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Frat1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO
IEA 		(PMID:10534617)
GO_REF:0000107 		RGD
Ensembl		 PMID:10534617 GO_REF:0000107 NCBI chr 1:240,638,309...240,640,857
Ensembl chr 1:240,638,296...240,640,945 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) RGD PMID:12121999 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:128,520,837...128,573,732
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Wnt1 Wnt family member 1 involved_in ISO
IEA 		(PMID:2534596)
GO_REF:0000107 		RGD
Ensembl		 PMID:2534596 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:16826533)
GO_REF:0000107 		RGD
Ensembl		 PMID:16826533 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:3583785 (PMID:16314491)
GO_REF:0000107 		RGD
Ensembl		 PMID:16314491 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO
IEA 		MGI:2179442 (PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2386265 (PMID:9136932) RGD PMID:9136932 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:4819764 (PMID:20643351)
GO_REF:0000107 		RGD
Ensembl		 PMID:20643351 GO_REF:0000107 NCBI chr 2:193,475,785...193,493,092
Ensembl chr 2:193,475,782...193,493,139 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO MGI:1856915 (PMID:9192865) RGD PMID:9192865 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:62,610,968...62,763,350 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:24052814)
GO_REF:0000107 		CAFA
RGD
Ensembl		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:1927227 (PMID:9192865)
GO_REF:0000107 		RGD
Ensembl		 PMID:9192865 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:17234970) RGD PMID:17234970 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA 		(PMID:10049573)
GO_REF:0000107 		RGD
Ensembl		 PMID:10049573 GO_REF:0000107 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Cdx4 caudal type homeo box 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,326,874...68,335,461
Ensembl chr  X:68,326,874...68,335,461 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO MGI:2672101 (PMID:12372301) RGD PMID:12372301 NCBI chr13:94,720,928...94,866,695
Ensembl chr13:94,720,928...94,866,702 		JBrowse link
G Dop1b DOP1 leucine zipper like protein B involved_in ISO (PMID:10950924) RGD PMID:10950924 NCBI chr11:33,024,376...33,125,931
Ensembl chr11:33,024,411...33,125,931 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_or_within ISO
IEA 		MGI:3039289 (PMID:15037550)
GO_REF:0000107 		RGD
Ensembl		 PMID:15037550 GO_REF:0000107 NCBI chr  X:64,257,351...64,270,158
Ensembl chr  X:64,257,351...64,270,157 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:10655590)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:10655590 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:69,523,733...70,596,743
Ensembl chr 9:69,531,481...70,596,595 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1927833|MGI:3629660 (PMID:16618415), (PMID:17522155)
GO_REF:0000107 		RGD
Ensembl		 PMID:16618415 PMID:17522155 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16618415) RGD PMID:16618415 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1934258 (PMID:18582859)
GO_REF:0000107 		RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2443342 (PMID:10529425) 		UniProt
Ensembl
RGD		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Meis2 Meis homeobox 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:102,742,904...102,944,833
Ensembl chr 3:102,742,900...102,949,696 		JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691 		JBrowse link
G Nanog Nanog homeobox involved_in ISO
IEA 		(PMID:15108323)
GO_REF:0000107 		RGD
Ensembl		 PMID:15108323 GO_REF:0000107 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:2158732 (PMID:11311163)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1857063 (PMID:15550757)
GO_REF:0000107 		RGD
Ensembl		 PMID:15550757 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Ooep oocyte expressed protein acts_upstream_of_or_within ISO (PMID:18191828) RGD PMID:18191828 NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856621|MGI:99783 (PMID:10529425)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:33,648,471...33,656,587
Ensembl chr11:33,648,486...33,656,584 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3692768 (PMID:16751105)
GO_REF:0000107 		RGD
Ensembl		 PMID:16751105 GO_REF:0000107 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:58,350,246...58,530,707 		JBrowse link
G Sim2 SIM bHLH transcription factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2180881 (PMID:12024028)
GO_REF:0000107 		RGD
Ensembl		 PMID:12024028 GO_REF:0000107 NCBI chr11:33,414,218...33,453,663
Ensembl chr11:33,414,218...33,453,663 		JBrowse link
G Smad1 SMAD family member 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smad5 SMAD family member 5 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:7,862,332...7,891,678
Ensembl chr17:7,864,720...7,891,634 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:3769332 (PMID:17984226) RGD PMID:17984226 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within ISO
IEA 		MGI:2182708 (PMID:10835630)
GO_REF:0000107 		RGD
Ensembl		 PMID:10835630 GO_REF:0000107 NCBI chr 8:48,989,376...49,177,011
Ensembl chr 8:48,994,566...49,177,011 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA
IBA
ISS 		(PMID:21131972)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:21131972 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA
IBA 		(PMID:21131974)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21131974 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 acts_upstream_of_or_within ISO
IEA 		MGI:6509073 (PMID:33139725)
GO_REF:0000107 		RGD
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr13:84,989,474...85,012,880
Ensembl chr13:84,981,728...85,012,878 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 acts_upstream_of_or_within ISO MGI:6720857 (PMID:33347437) RGD PMID:33347437 NCBI chr18:67,884,651...67,955,873
Ensembl chr18:67,869,855...67,952,318 		JBrowse link
G Dnaaf11 dynein axonemal assembly factor 11 involved_in
acts_upstream_of_or_within 		ISO (PMID:23122589)
MGI:6147714 (PMID:27353389) 		RGD PMID:23122589 PMID:27353389 NCBI chr 7:98,141,525...98,245,906
Ensembl chr 7:98,144,763...98,245,837 		JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 acts_upstream_of_or_within ISO MGI:1856917 (PMID:10549278), (PMID:22102620) RGD PMID:10549278 PMID:22102620 NCBI chr 6:138,839,175...139,155,554
Ensembl chr 6:138,839,177...139,155,536 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO MGI:1856915 (PMID:10549278) RGD PMID:10549278 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:62,610,968...62,763,350 		JBrowse link
G Megf8 multiple EGF-like-domains 8 NOT|acts_upstream_of_or_within ISO MGI:3722325 (PMID:18043505) RGD PMID:18043505 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO MGI:5548687 (PMID:31383820) RGD PMID:31383820 NCBI chr 8:20,520,898...20,534,499
Ensembl chr 8:20,520,898...20,534,499 		JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:27486780)
GO_REF:0000107
MGI:6110171 (PMID:27486780) 		RGD
Ensembl		 PMID:27486780 GO_REF:0000107 NCBI chr10:85,480,089...85,508,603
Ensembl chr10:85,480,094...85,508,603 		JBrowse link
G Ofd1 Ofd1 centriole and centriolar satellite protein involved_in ISO
IEA 		(PMID:16311594)
GO_REF:0000107 		RGD
Ensembl		 PMID:16311594 GO_REF:0000107 NCBI chr  X:28,015,347...28,056,115
Ensembl chr  X:28,015,347...28,056,110 		JBrowse link
G Rfx3 regulatory factor X3 involved_in ISO
IEA 		(PMID:15121860)
GO_REF:0000107 		RGD
Ensembl		 PMID:15121860 GO_REF:0000107 NCBI chr 1:225,449,872...225,709,622
Ensembl chr 1:225,456,187...225,709,402 		JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc8 tetratricopeptide repeat domain 8 involved_in ISO
IEA 		(PMID:14520415)
GO_REF:0000107 		RGD
Ensembl		 PMID:14520415 GO_REF:0000107 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx4 iroquois homeobox 4 IEP RGD PMID:10882515 RGD:1582291 NCBI chr 1:30,030,561...30,039,549
Ensembl chr 1:30,030,561...30,039,549 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
establishment of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:5056368 (PMID:29317443)
GO_REF:0000107 		RGD
Ensembl		 PMID:29317443 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 involved_in ISO
IEA 		(PMID:33139725)
GO_REF:0000107 		RGD
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr13:84,989,474...85,012,880
Ensembl chr13:84,981,728...85,012,878 		JBrowse link
G Cfap52 cilia and flagella associated protein 52 involved_in ISO
IEA 		(PMID:33139725)
GO_REF:0000107 		RGD
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr10:52,613,761...52,654,922
Ensembl chr10:52,613,762...52,654,934 		JBrowse link
G Ciroz ciliated left-right organizer protein containing ZP-N domains involved_in ISO (PMID:39753129) RGD PMID:39753129 NCBI chr 5:159,075,217...159,110,642
Ensembl chr 5:159,075,343...159,105,369 		JBrowse link
G Dnaaf2 dynein, axonemal, assembly factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:5526981|MGI:5532530 (PMID:23525783), (PMID:31107948)
GO_REF:0000107 		RGD
Ensembl		 PMID:23525783 PMID:31107948 GO_REF:0000107 NCBI chr 6:87,661,101...87,670,267
Ensembl chr 6:87,660,821...87,670,199 		JBrowse link
G Enkur enkurin, TRPC channel interacting protein involved_in
acts_upstream_of_or_within 		ISO (PMID:29257953)
MGI:6156078 (PMID:29257953) 		RGD PMID:29257953 NCBI chr17:83,690,105...83,714,756
Ensembl chr17:83,690,797...83,714,408 		JBrowse link
G Pierce1 piercer of microtubule wall 1 involved_in ISO (PMID:27305836) RGD PMID:27305836 NCBI chr 3:11,797,031...11,801,568
Ensembl chr 3:11,797,031...11,801,568 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647 (PMID:16720875)
GO_REF:0000107 		RGD
Ensembl		 PMID:16720875 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16720875) RGD PMID:16720875 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 Fez family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:1859823 (PMID:16971467)
GO_REF:0000107 		RGD
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr 4:51,762,751...51,766,078
Ensembl chr 4:51,762,751...51,766,078 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:1920441 (PMID:16971467)
GO_REF:0000107 		RGD
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr15:12,768,614...12,777,554
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:2450901|MGI:98953 (PMID:18094027) RGD PMID:18094027 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:102764 (PMID:18094027)
GO_REF:0000107 		RGD
Ensembl		 PMID:18094027 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1857843|MGI:2150348 (PMID:16613831)
GO_REF:0000107 		RGD
Ensembl		 PMID:16613831 GO_REF:0000107 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:10625551)
GO_REF:0000107 		RGD
Ensembl		 PMID:10625551 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2150162 (PMID:11060228), (PMID:11124115), (PMID:18701439)
GO_REF:0000107 		RGD
Ensembl		 PMID:11060228 PMID:11124115 PMID:18701439 GO_REF:0000107 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857494 (PMID:10393115), (PMID:11163262), (PMID:11830575)
GO_REF:0000107 		RGD
Ensembl		 PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:11050125), (PMID:11124115), (PMID:18701439), (PMID:24528677)
GO_REF:0000107 		RGD
Ensembl		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) RGD PMID:18791198 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within ISO
IEA 		MGI:2152544 (PMID:19732765)
GO_REF:0000107 		RGD
Ensembl		 PMID:19732765 GO_REF:0000107 NCBI chr 3:50,861,367...50,935,880
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2443342 (PMID:10529425) 		UniProt
Ensembl
RGD		 PMID:10529425 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856621|MGI:99783 (PMID:10529425)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr 9:55,975,574...56,044,325
Ensembl chr 9:55,975,667...56,044,464 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:3775846|MGI:3840448 (PMID:24528677)
GO_REF:0000107 		RGD
Ensembl		 PMID:24528677 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO
IEA 		(PMID:15164427)
GO_REF:0000107 		RGD
Ensembl		 PMID:15164427 GO_REF:0000107 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO
IEA 		(PMID:15164427)
GO_REF:0000107 		RGD
Ensembl		 PMID:15164427 GO_REF:0000107 NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:9169845)
GO_REF:0000107 		RGD
Ensembl		 PMID:9169845 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO
IEA 		(PMID:16377640)
GO_REF:0000107 		RGD
Ensembl		 PMID:16377640 GO_REF:0000107 NCBI chr15:44,299,591...44,311,695
Ensembl chr15:44,299,621...44,310,264 		JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:26295701)
GO_REF:0000107 		RGD
Ensembl		 PMID:26295701 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in ISO
IEA
ISS 		(PMID:19736317)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:19736317 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO
ISS
IEA 		(PMID:20702560)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:20702560 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO
IEA 		(PMID:18297060)
GO_REF:0000107 		RGD
Ensembl		 PMID:18297060 GO_REF:0000107 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Gata5 GATA binding protein 5 involved_in ISO
IEA 		(PMID:21633169)
GO_REF:0000107 		RGD
Ensembl		 PMID:21633169 GO_REF:0000107 NCBI chr 3:167,418,563...167,426,751
Ensembl chr 3:167,418,565...167,426,751 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:18297060), (PMID:18593560)
GO_REF:0000107 		RGD
Ensembl		 PMID:18297060 PMID:18593560 GO_REF:0000107 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:25691540) RGD PMID:25691540 NCBI chr11:10,580,863...11,621,675
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (PMID:25691540) RGD PMID:25691540 NCBI chr11:12,528,949...14,096,726
Ensembl chr11:12,528,951...13,041,536 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Aplnr apelin receptor involved_in ISO
IEA 		(PMID:23603510)
GO_REF:0000107 		RGD
Ensembl		 PMID:23603510 GO_REF:0000107 NCBI chr 3:70,217,407...70,221,052
Ensembl chr 3:70,217,385...70,221,050 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:22554696)
GO_REF:0000107 		RGD
Ensembl		 PMID:22554696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Asb2 ankyrin repeat and SOCS box-containing 2 involved_in ISO (PMID:32179481) RGD PMID:32179481 NCBI chr 6:128,239,550...128,275,833
Ensembl chr 6:122,474,756...122,510,854 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO
IEA 		(PMID:22693285)
GO_REF:0000107 		RGD
Ensembl		 PMID:22693285 GO_REF:0000107 NCBI chr 2:116,665,651...116,703,354
Ensembl chr 2:116,665,261...116,703,350 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO
IEA
IBA 		(PMID:22693285)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:22693285 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,486,748...104,527,284
Ensembl chr10:104,486,748...104,527,243 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179530 (PMID:10521397)
GO_REF:0000107 		RGD
Ensembl		 PMID:10521397 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2176158 (PMID:15750185) RGD PMID:15750185 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) RGD PMID:12730124 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944400), (PMID:19944405)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944400 PMID:19944405 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO
IEA 		(PMID:22581229)
GO_REF:0000107 		RGD
Ensembl		 PMID:22581229 GO_REF:0000107 NCBI chr10:87,846,327...87,849,959
Ensembl chr10:87,846,357...87,849,757 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO
IEA 		UniProtKB:Q60838 (PMID:22841628)
GO_REF:0000107 		RGD
Ensembl		 PMID:22841628 GO_REF:0000107 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO
IEA 		UniProtKB:P51141 (PMID:22841628)
GO_REF:0000107 		RGD
Ensembl		 PMID:22841628 GO_REF:0000107 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Eng endoglin involved_in ISO (PMID:10348742), (PMID:19703439) RGD PMID:10348742 PMID:19703439 NCBI chr 3:15,934,566...15,972,618
Ensembl chr 3:15,934,518...15,973,230 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1857843 (PMID:10411502)
GO_REF:0000107 		RGD
Ensembl		 PMID:10411502 GO_REF:0000107 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO
IEA 		(PMID:17286298)
GO_REF:0000107 		RGD
Ensembl		 PMID:17286298 GO_REF:0000107 NCBI chr 1:156,219,460...156,238,436
Ensembl chr 1:156,219,460...156,230,667 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO
IEA 		(PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (PMID:15310850) RGD PMID:15310850 NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (PMID:9486664) RGD PMID:9486664 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO
IEA 		MGI:2153823 (PMID:9500551)
GO_REF:0000107 		RGD
Ensembl		 PMID:9500551 GO_REF:0000107 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857639 (PMID:9171826)
GO_REF:0000107 		RGD
Ensembl		 PMID:9171826 GO_REF:0000107 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA 		MGI:2179429 (PMID:14659802)
GO_REF:0000107 		RGD
Ensembl		 PMID:14659802 GO_REF:0000107 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:3829198 (PMID:18930042)
GO_REF:0000107 		RGD
Ensembl		 PMID:18930042 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO
IEA 		(PMID:15930098)
GO_REF:0000107 		RGD
Ensembl		 PMID:15930098 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO
IEA 		MGI:3707373 (PMID:17027958)
GO_REF:0000107 		RGD
Ensembl		 PMID:17027958 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO
IEA 		(PMID:11517919)
GO_REF:0000107 		RGD
Ensembl		 PMID:11517919 GO_REF:0000107 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) RGD PMID:25463925 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kif3a kinesin family member 3a acts_upstream_of_or_within ISO MGI:2181727 (PMID:10330409) RGD PMID:10330409 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191 		JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2386948 (PMID:12522123)
GO_REF:0000107 		RGD
Ensembl		 PMID:12522123 GO_REF:0000107 NCBI chr 1:244,083,873...244,085,690
Ensembl chr 1:244,083,873...244,085,690 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO 		GO_REF:0000024
(PMID:16680724) 		UniProt
RGD		 PMID:16680724 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:10393122)
GO_REF:0000107 		RGD
Ensembl		 PMID:10393122 GO_REF:0000107 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603514 (PMID:16000382)
GO_REF:0000107 		RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:166,345,853...166,530,575
Ensembl chr 1:166,345,859...166,471,719
Ensembl chr 1:166,345,859...166,471,719 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:1927227 (PMID:16510504), (PMID:7628699), (PMID:9192865)
GO_REF:0000107 		RGD
Ensembl		 PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:106676 (PMID:16496285)
GO_REF:0000107 		RGD
Ensembl		 PMID:16496285 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA 		UniProtKB:O35516 (PMID:12730124)
GO_REF:0000107 		RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q01705 (PMID:12730124) 		Ensembl
RGD		 PMID:12730124 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO
IEA 		MGI:3053092 (PMID:17884984)
GO_REF:0000107 		RGD
Ensembl		 PMID:17884984 GO_REF:0000107 NCBI chr 4:117,961,163...117,965,402
Ensembl chr 4:117,961,163...117,965,402 		JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO
IEA 		(PMID:18371931), (PMID:20007846)
GO_REF:0000107 		RGD
Ensembl		 PMID:18371931 PMID:20007846 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383 		JBrowse link
G Ovol2 ovo-like zinc finger 2 acts_upstream_of_or_within ISO
IEA 		MGI:3777011 (PMID:17573777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17573777 GO_REF:0000107 NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284 (PMID:10557208)
GO_REF:0000107 		RGD
Ensembl		 PMID:10557208 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1857796 (PMID:10411502), (PMID:10500184)
GO_REF:0000107
(PMID:11517919) 		RGD
Ensembl		 PMID:10411502 PMID:10500184 PMID:11517919 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11517919)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2179440 (PMID:17610846)
GO_REF:0000107
(PMID:17610846), (PMID:17655922) 		RGD
Ensembl		 PMID:17610846 PMID:17655922 GO_REF:0000107 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:2385465|MGI:2386742 (PMID:15929941)
GO_REF:0000107 		RGD
Ensembl		 PMID:15929941 GO_REF:0000107 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stil STIL, centriolar assembly protein acts_upstream_of_or_within ISO MGI:2152962 (PMID:10385121) RGD PMID:10385121 NCBI chr 5:128,520,837...128,573,732
Ensembl chr 5:128,520,953...128,573,730 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:3512046 (PMID:16155214)
GO_REF:0000107 		RGD
Ensembl		 PMID:16155214 GO_REF:0000107 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:3579849|MGI:3580099 (PMID:15843407), (PMID:15901664)
GO_REF:0000107
GO_REF:0000033
(PMID:15843409) 		RGD
Ensembl
GO_Central		 PMID:15843407 PMID:15843409 PMID:15901664 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:23,200,104...23,258,218
Ensembl chr 8:23,204,507...23,258,175 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:2655214|MGI:3769504 (PMID:17460765), (PMID:18723448)
GO_REF:0000107 		RGD
Ensembl		 PMID:17460765 PMID:18723448 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA 		(PMID:17050629)
GO_REF:0000107 		RGD
Ensembl		 PMID:17050629 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4343479|MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in ISO
IEA 		(PMID:11440971)
GO_REF:0000107 		RGD
Ensembl		 PMID:11440971 GO_REF:0000107 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857489 (PMID:16291790)
GO_REF:0000107 		RGD
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within 		ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (PMID:15384171), (PMID:16496285) 		RGD PMID:9354794 PMID:15384171 PMID:16496285 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO
IEA 		MGI:3578151 (PMID:22554696)
GO_REF:0000107 		RGD
Ensembl		 PMID:22554696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) RGD PMID:12730124 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3578147 (PMID:20678497)
GO_REF:0000107 		RGD
Ensembl		 PMID:20678497 GO_REF:0000107 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO
IEA 		MGI:2682066|MGI:3829198 (PMID:18930042), (PMID:22554696)
GO_REF:0000107 		RGD
Ensembl		 PMID:18930042 PMID:22554696 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ift25 intraflagellar transport 25 acts_upstream_of_or_within ISO MGI:4432759|MGI:5426875 (PMID:22595669) RGD PMID:22595669 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421 		JBrowse link
G Mns1 meiosis-specific nuclear structural 1 acts_upstream_of_or_within ISO
IEA 		MGI:5425368 (PMID:22396656)
GO_REF:0000107 		RGD
Ensembl		 PMID:22396656 GO_REF:0000107 NCBI chr 8:73,148,877...73,169,570
Ensembl chr 8:73,148,877...73,176,925 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO
IEA 		UniProtKB:O35516 (PMID:12730124)
GO_REF:0000107 		RGD
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Notch2 notch receptor 2 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q01705 (PMID:12730124) 		Ensembl
RGD		 PMID:12730124 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) RGD PMID:21307093 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:2137553 (PMID:9636176)
GO_REF:0000107 		RGD
Ensembl		 PMID:9636176 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:3698161 (PMID:17127413) RGD PMID:17127413 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO MGI:5523142 (PMID:23742838) RGD PMID:23742838 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:11,588,017...11,619,711 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 NOT|acts_upstream_of_or_within ISO MGI:3512139 (PMID:21203428) RGD PMID:21203428 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 involved_in ISO
IEA 		(PMID:19944400)
GO_REF:0000107 		RGD
Ensembl		 PMID:19944400 GO_REF:0000107 NCBI chr19:47,624,534...47,652,314
Ensembl chr19:47,624,181...47,652,313 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia acts_upstream_of_or_within ISO
IEA 		(PMID:20080492)
GO_REF:0000107 		RGD
Ensembl		 PMID:20080492 GO_REF:0000107 NCBI chr 1:244,408,766...244,426,891
Ensembl chr 1:244,408,785...244,426,888 		JBrowse link
G Foxj1 forkhead box J1 acts_upstream_of_or_within ISO
IEA 		MGI:2158221 (PMID:10873152)
GO_REF:0000107 		RGD
Ensembl		 PMID:10873152 GO_REF:0000107 NCBI chr10:101,566,299...101,570,370
Ensembl chr10:101,566,304...101,570,237 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO
IEA 		MGI:3707373 (PMID:17027958)
GO_REF:0000107 		RGD
Ensembl		 PMID:17027958 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:23063620)
GO_REF:0000107
(PMID:24052814)
(PMID:32203821), (PMID:32966817)
GO_REF:0000024 		RGD
Ensembl
CAFA		 PMID:23063620 PMID:24052814 PMID:32203821 PMID:32966817 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO
IEA 		(PMID:34486668)
GO_REF:0000107 		RGD
Ensembl		 PMID:34486668 GO_REF:0000107 NCBI chr 1:175,217,680...175,288,521
Ensembl chr 1:175,217,545...175,288,334 		JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO
IEA 		MGI:4151115 (PMID:20080492)
GO_REF:0000107 		RGD
Ensembl		 PMID:20080492 GO_REF:0000107 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:4949891 (PMID:20080492) RGD PMID:20080492 NCBI chr14:83,552,964...83,670,062
Ensembl chr14:83,545,469...83,638,498 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO
IEA 		MGI:2183156 (PMID:16801545)
GO_REF:0000107 		RGD
Ensembl		 PMID:16801545 GO_REF:0000107 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:5476827 (PMID:23184148), (PMID:23303524) RGD PMID:23184148 PMID:23303524 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567|MGI:2148569 (PMID:19686689), (PMID:19805295)
GO_REF:0000107 		RGD
Ensembl		 PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO MGI:1261834 (PMID:19686689) RGD PMID:19686689 NCBI chr 4:46,328,408...46,374,673
Ensembl chr 4:46,333,998...46,374,402 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO
IEA 		MGI:98954 (PMID:19686689)
GO_REF:0000107 		RGD
Ensembl		 PMID:19686689 GO_REF:0000107 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		(PMID:15531758)
GO_REF:0000107 		RGD
Ensembl		 PMID:15531758 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647|MGI:95729 (PMID:16720875)
GO_REF:0000107 		RGD
Ensembl		 PMID:16720875 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16720875) RGD PMID:16720875 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1099809 (PMID:16720875)
GO_REF:0000107 		RGD
Ensembl		 PMID:16720875 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:2687297 (PMID:16720875) RGD PMID:16720875 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:15634693)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:15634693 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978 		JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:15607945)
GO_REF:0000107 		RGD
Ensembl		 PMID:15607945 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:2150347 (PMID:17601531)
GO_REF:0000107 		RGD
Ensembl		 PMID:17601531 GO_REF:0000107 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857634 (PMID:16651541)
GO_REF:0000107 		RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:11029008), (PMID:19795512) RGD PMID:11029008 PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857490 (PMID:2205396)
GO_REF:0000107 		RGD
Ensembl		 PMID:2205396 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:15857913) 		Ensembl
RGD		 PMID:15857913 GO_REF:0000107 NCBI chr 5:121,691,370...121,828,035
Ensembl chr 5:121,691,393...121,827,992 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856382 (PMID:8555108)
GO_REF:0000107 		RGD
Ensembl		 PMID:8555108 GO_REF:0000107 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857634 (PMID:16651541)
GO_REF:0000107 		RGD
Ensembl		 PMID:16651541 GO_REF:0000107 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:104877 (PMID:11500373)
GO_REF:0000107 		RGD
Ensembl		 PMID:11500373 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO MGI:104853 (PMID:11522634) RGD PMID:11522634 NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddit3 DNA-damage inducible transcript 3 involved_in ISO
IEA 		(PMID:16434966)
GO_REF:0000107 		RGD
Ensembl		 PMID:16434966 GO_REF:0000107 NCBI chr 7:65,001,695...65,006,517
Ensembl chr 7:63,116,380...63,121,201 		JBrowse link
G Sostdc1 sclerostin domain containing 1 involved_in ISO
IEA 		(PMID:15020244)
GO_REF:0000107 		RGD
Ensembl		 PMID:15020244 GO_REF:0000107 NCBI chr 6:53,051,336...53,055,510
Ensembl chr 6:53,051,354...53,055,579 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO 		GO_REF:0000024
(PMID:23806618) 		UniProt
RGD		 PMID:23806618 GO_REF:0000024 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Ofd1 Ofd1 centriole and centriolar satellite protein involved_in ISO
IEA 		(PMID:23806618)
GO_REF:0000107 		RGD
Ensembl		 PMID:23806618 GO_REF:0000107 NCBI chr  X:28,015,347...28,056,115
Ensembl chr  X:28,015,347...28,056,110 		JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA 		(PMID:15042700)
GO_REF:0000107 		RGD
Ensembl		 PMID:15042700 GO_REF:0000107 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:23072809)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:23072809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) RGD PMID:23332756 NCBI chr13:80,111,271...80,156,517
Ensembl chr13:77,577,739...77,619,613 		JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12755329) 		Ensembl
RGD		 PMID:12755329 GO_REF:0000107 NCBI chr 2:196,029,206...196,053,848
Ensembl chr 2:196,029,434...196,053,845 		JBrowse link
G Nog noggin involved_in IEA
ISO 		GO_REF:0000107
(PMID:8582276) 		Ensembl
RGD		 PMID:8582276 GO_REF:0000107 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in ISO (PMID:17584735) RGD PMID:17584735 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) RGD PMID:19004860 NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520 		JBrowse link
G Ptch1 patched 1 involved_in ISO
IEA 		(PMID:11517919)
GO_REF:0000107 		RGD
Ensembl		 PMID:11517919 GO_REF:0000107 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
neural plate mediolateral regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158343 (PMID:16943278)
GO_REF:0000107 		RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
neural plate pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158343 (PMID:16943278)
GO_REF:0000107 		RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B involved_in ISO
IEA 		(PMID:23014696)
GO_REF:0000107 		RGD
Ensembl		 PMID:23014696 GO_REF:0000107 NCBI chr11:150,100...217,103
Ensembl chr11:150,955...217,197 		JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like acts_upstream_of_or_within ISO
IEA 		MGI:2442827 (PMID:29487109)
GO_REF:0000107 		RGD
Ensembl		 PMID:29487109 GO_REF:0000107 NCBI chr 8:100,188,414...100,229,077
Ensembl chr 8:100,194,999...100,228,988 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA 		MGI:4458412 (PMID:24009529)
GO_REF:0000107 		RGD
Ensembl		 PMID:24009529 GO_REF:0000107 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ptch1 patched 1 involved_in ISO
IEA 		(PMID:8681379)
GO_REF:0000107 		RGD
Ensembl		 PMID:8681379 GO_REF:0000107 NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904) RGD PMID:17553904 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA 		MGI:1919757 (PMID:29487109)
GO_REF:0000107 		RGD
Ensembl		 PMID:29487109 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) RGD PMID:22698544 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:4129326 (PMID:21945076)
GO_REF:0000107 		RGD
Ensembl		 PMID:21945076 GO_REF:0000107 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
oocyte axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:193,435,465...193,445,534
Ensembl chr 2:193,435,468...193,445,520 		JBrowse link
organ induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857137 (PMID:9806931)
GO_REF:0000107 		RGD
Ensembl		 PMID:9806931 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Fgf1 fibroblast growth factor 1 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr18:30,686,555...30,772,667
Ensembl chr18:30,686,581...30,772,357 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IDA
IEA
ISO 		PMID:10964474
GO_REF:0000107
MGI:95517 (PMID:12810586) 		Ensembl
RGD		 PMID:12810586 PMID:10964474 GO_REF:0000107, RGD:8554722 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO
IEA 		(PMID:15576401)
GO_REF:0000107 		RGD
Ensembl		 PMID:15576401 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:12810586), (PMID:15741321) RGD PMID:12810586 PMID:15741321 NCBI chr 1:200,001,162...200,005,539
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:95517 (PMID:15741321)
GO_REF:0000107 		RGD
Ensembl		 PMID:15741321 GO_REF:0000107 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO
IEA 		(PMID:15576401)
GO_REF:0000107 		RGD
Ensembl		 PMID:15576401 GO_REF:0000107 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr17:9,461,541...9,476,268
Ensembl chr17:9,461,547...9,476,242 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA 		MGI:3521833 (PMID:15569927)
GO_REF:0000107 		RGD
Ensembl		 PMID:15569927 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gdnf glial cell derived neurotrophic factor acts_upstream_of_or_within ISO
IEA 		MGI:1345139 (PMID:15691764)
GO_REF:0000107 		RGD
Ensembl		 PMID:15691764 GO_REF:0000107 NCBI chr 2:56,894,022...56,919,935
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12050119)
GO_REF:0000107 		RGD
Ensembl		 PMID:12050119 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12050119)
GO_REF:0000107 		RGD
Ensembl		 PMID:12050119 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12050119) RGD PMID:12050119 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2655195 (PMID:12783782)
GO_REF:0000107 		RGD
Ensembl		 PMID:12783782 GO_REF:0000107 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 acts_upstream_of_or_within ISO
IEA 		MGI:3574404 (PMID:15691764)
GO_REF:0000107 		RGD
Ensembl		 PMID:15691764 GO_REF:0000107 NCBI chr 2:120,557,256...120,561,917
Ensembl chr 2:120,556,706...120,566,189 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:45,078,081...45,080,732
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:265,876,858...265,924,357
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21383078)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:70,944,441...70,992,345
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:24,841,259...24,856,621
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,736,255...184,760,534
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
pattern specification involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISO
IEA 		(PMID:15634693)
GO_REF:0000107 		RGD
Ensembl		 PMID:15634693 GO_REF:0000107 NCBI chr 2:29,702,558...29,704,978
Ensembl chr 2:29,702,558...29,704,978 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:18835385) 		UniProt
Ensembl
RGD		 PMID:18835385 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11044396)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11044396 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		(PMID:14511481)
GO_REF:0000107 		RGD
Ensembl		 PMID:14511481 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in ISO
IEA 		(PMID:19506109)
GO_REF:0000107 		RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:18316368)
GO_REF:0000107 		RGD
Ensembl		 PMID:18316368 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:18316368) RGD PMID:18316368 NCBI chr16:8,645,171...8,728,225
Ensembl chr16:8,638,924...8,721,981 		JBrowse link
primary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO 		GO_REF:0000024
(PMID:16680724) 		UniProt
RGD		 PMID:16680724 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO
IEA 		UniProtKB:P22725 (PMID:22569553)
GO_REF:0000107 		RGD
Ensembl		 PMID:22569553 GO_REF:0000107 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P48615 (PMID:22569553) 		Ensembl
RGD		 PMID:22569553 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:1891557 (PMID:23552073)
GO_REF:0000107 		RGD
Ensembl		 PMID:23552073 GO_REF:0000107 NCBI chr11:35,021,536...35,038,322
Ensembl chr11:35,021,596...35,038,319 		JBrowse link
G Foxa2 forkhead box A2 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:11291865)
MGI:1857725 (PMID:11291865) 		UniProt
RGD		 PMID:11291865 GO_REF:0000024 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO
IEA 		MGI:4999724|MGI:97359 (PMID:21445260)
GO_REF:0000107 		RGD
Ensembl		 PMID:21445260 GO_REF:0000107 NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11291865)
MGI:1857502|MGI:1857848 (PMID:11291865) 		UniProt
Ensembl
RGD		 PMID:11291865 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:98958 (PMID:19795512) RGD PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:96086 (PMID:14511481), (PMID:21445260) 		Ensembl
RGD		 PMID:14511481 PMID:21445260 GO_REF:0000107 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within
involved_in 		ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO 		GO_REF:0000107
MGI:4356107 (PMID:19706528) 		Ensembl
RGD		 PMID:19706528 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:2158696 (PMID:9799237)
GO_REF:0000107 		RGD
Ensembl		 PMID:9799237 GO_REF:0000107 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:2180720 (PMID:16397896) RGD PMID:16397896 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
pronephric field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:12435636) 		UniProt
RGD		 PMID:12435636 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12435636) 		UniProt
Ensembl
RGD		 PMID:12435636 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
prostate induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO
IEA 		MGI:3716756 (PMID:17317769)
GO_REF:0000107 		RGD
Ensembl		 PMID:17317769 GO_REF:0000107 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925 		JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:12163408) RGD PMID:12163408 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
proximal/distal pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA 		MGI:2180721 (PMID:14623241), (PMID:15069081)
GO_REF:0000107 		RGD
Ensembl		 PMID:14623241 PMID:15069081 GO_REF:0000107 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1856318 (PMID:16887818) RGD PMID:16887818 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO
IEA 		MGI:5007063 (PMID:22280990)
GO_REF:0000107 		RGD
Ensembl		 PMID:22280990 GO_REF:0000107 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:119,686,350...119,750,601 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148594 (PMID:12885771)
GO_REF:0000107 		RGD
Ensembl		 PMID:12885771 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO
IEA 		MGI:3039046 (PMID:15030763)
GO_REF:0000107 		RGD
Ensembl		 PMID:15030763 GO_REF:0000107 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22529374) 		UniProt
RGD		 PMID:22529374 GO_REF:0000024 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857826|MGI:94902 (PMID:9187081)
GO_REF:0000107 		RGD
Ensembl		 PMID:9187081 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857828|MGI:94901 (PMID:9187081)
GO_REF:0000107 		RGD
Ensembl		 PMID:9187081 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857163 (PMID:8684466), (PMID:9362463)
GO_REF:0000107 		RGD
Ensembl		 PMID:8684466 PMID:9362463 GO_REF:0000107 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943 		JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:16342201)
GO_REF:0000107 		RGD
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr 7:65,042,237...65,054,888
Ensembl chr 7:63,156,926...63,169,251 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95727|MGI:95729 (PMID:16342201) RGD PMID:16342201 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276|MGI:95728 (PMID:16342201)
GO_REF:0000107 		RGD
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within ISO MGI:3054923 (PMID:12808456) RGD PMID:12808456 NCBI chr 3:100,512,317...100,524,001
Ensembl chr 3:100,512,313...100,524,082 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO
IEA 		MGI:96192|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,331,591...81,340,878
Ensembl chr 4:81,331,591...81,340,919 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96193|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232 		JBrowse link
G Hoxa9 homeobox A9 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:96210 (PMID:8625797) 		GO_Central
RGD		 PMID:8625797 GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:81,323,382...81,326,358 		JBrowse link
G Hoxb9 homeo box B9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:81,237,312...81,240,818
Ensembl chr10:81,237,312...81,240,818 		JBrowse link
G Hoxc10 homeo box C10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96202 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,103,741...134,108,966
Ensembl chr 7:134,103,643...134,108,966 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO
IEA 		MGI:96172|MGI:96203 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:134,091,552...134,094,738 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA 		MGI:96171|MGI:96192 (PMID:12869760)
GO_REF:0000107 		RGD
Ensembl		 PMID:12869760 GO_REF:0000107 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:59,594,516...59,597,725 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12869760) RGD PMID:12869760 NCBI chr 3:59,584,840...59,587,257
Ensembl chr 3:59,585,039...59,586,783 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2150414|MGI:96180 (PMID:8625797) 		GO_Central
Ensembl
RGD		 PMID:8625797 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:59,600,575...59,602,754 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3707955 (PMID:17119023)
GO_REF:0000107 		RGD
Ensembl		 PMID:17119023 GO_REF:0000107 NCBI chr 3:77,429,600...77,483,593
Ensembl chr 3:77,429,798...77,483,593 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1341793|MGI:2155612 (PMID:11566859), (PMID:16672333)
GO_REF:0000107 		RGD
Ensembl		 PMID:11566859 PMID:16672333 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO MGI:97495 (PMID:16672333) RGD PMID:16672333 NCBI chr20:4,151,500...4,156,425
Ensembl chr20:4,151,500...4,156,425 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:2684137 (PMID:14597661)
GO_REF:0000107 		RGD
Ensembl		 PMID:14597661 GO_REF:0000107 NCBI chr 6:139,816,258...139,818,865
Ensembl chr 6:139,814,819...139,823,168
Ensembl chr 6:139,814,819...139,823,168 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA 		MGI:1934580 (PMID:10227293)
GO_REF:0000107 		RGD
Ensembl		 PMID:10227293 GO_REF:0000107 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 iroquois homeobox 1 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378 		JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 iroquois homeobox 3 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr19:15,211,882...15,215,317
Ensembl chr19:15,211,878...15,215,317 		JBrowse link
radial pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579117|MGI:3579118 (PMID:15829524)
GO_REF:0000107 		RGD
Ensembl		 PMID:15829524 GO_REF:0000107 NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031 		JBrowse link
regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:97,306,431...97,309,783 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155|MGI:1856158 (PMID:24528677), (PMID:9169845)
GO_REF:0000107 		RGD
Ensembl		 PMID:9169845 PMID:24528677 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO
IEA 		(PMID:16256739)
GO_REF:0000107 		RGD
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283 		JBrowse link
regulation of adaxial/abaxial pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO
IEA 		MGI:95286 (PMID:17107999)
GO_REF:0000107 		RGD
Ensembl		 PMID:17107999 GO_REF:0000107 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO
IEA 		MGI:88174 (PMID:17107999)
GO_REF:0000107 		RGD
Ensembl		 PMID:17107999 GO_REF:0000107 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO
IBA 		UniProtKB:A0A803JG39 (PMID:15687260)
GO_REF:0000033 		RGD
GO_Central		 PMID:15687260 GO_REF:0000033 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf207 ring finger protein 207 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:162,815,351...162,828,325
Ensembl chr 5:162,815,357...162,828,375 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:22015720)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:22015720 GO_REF:0000024 GO_REF:0000107 NCBI chr18:54,472,587...54,490,913
Ensembl chr18:54,473,444...54,490,814 		JBrowse link
G Cdx2 caudal type homeo box 2 involved_in ISO
IEA 		(PMID:22015720)
GO_REF:0000107 		RGD
Ensembl		 PMID:22015720 GO_REF:0000107 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:26114479) 		UniProt
RGD		 PMID:26114479 GO_REF:0000024 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:3512139|MGI:97487 (PMID:17974128)
GO_REF:0000107 		RGD
Ensembl		 PMID:17974128 GO_REF:0000107 NCBI chr 1:223,317,543...223,324,131
Ensembl chr 1:223,317,642...223,324,131 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:19061953)
GO_REF:0000107
MGI:1933734 (PMID:19779553) 		RGD
Ensembl		 PMID:19061953 PMID:19779553 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857230 (PMID:7789282)
GO_REF:0000107 		RGD
Ensembl		 PMID:7789282 GO_REF:0000107 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1330307|MGI:1856173 (PMID:17974128) RGD PMID:17974128 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO
IEA 		MGI:1857632 (PMID:8887324)
GO_REF:0000107 		RGD
Ensembl		 PMID:8887324 GO_REF:0000107 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO
IEA 		MGI:2179440 (PMID:19913509)
GO_REF:0000107 		RGD
Ensembl		 PMID:19913509 GO_REF:0000107 NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228 		JBrowse link
secondary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		MGI:96522 (PMID:22711842)
GO_REF:0000107 		RGD
Ensembl		 PMID:22711842 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISS
ISO 		GO_REF:0000107
GO_REF:0000024
(PMID:20702560) 		Ensembl
UniProt
RGD		 PMID:20702560 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO
IEA 		(PMID:15363409)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363409 GO_REF:0000107 NCBI chr 7:108,387,969...108,391,566
Ensembl chr 7:108,387,969...108,390,049 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO
IEA 		(PMID:20520780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20520780 GO_REF:0000107 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:26822476)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:26822476 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:54,189,305...54,346,769
Ensembl chr 3:54,189,308...54,346,708 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO 		GO_REF:0000024
(PMID:15890826) 		UniProt
RGD		 PMID:15890826 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO
IEA 		(PMID:18593560)
GO_REF:0000107 		RGD
Ensembl		 PMID:18593560 GO_REF:0000107 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1270862|MGI:3583755 (PMID:22711842) RGD PMID:22711842 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 acts_upstream_of_or_within ISO
IEA 		MGI:2148567 (PMID:17519332)
GO_REF:0000107 		RGD
Ensembl		 PMID:17519332 GO_REF:0000107 NCBI chr 4:11,441,142...11,472,781
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO
IEA 		UniProtKB:P22725 (PMID:22569553)
GO_REF:0000107 		RGD
Ensembl		 PMID:22569553 GO_REF:0000107 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:P48615 (PMID:22569553) 		Ensembl
RGD		 PMID:22569553 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2429760 (PMID:12421720)
GO_REF:0000107 		RGD
Ensembl		 PMID:12421720 GO_REF:0000107 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:1857626 (PMID:9367425)
GO_REF:0000107 		RGD
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:2157803 (PMID:12701106)
GO_REF:0000107 		RGD
Ensembl		 PMID:12701106 GO_REF:0000107 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
G Mllt3 MLLT3, super elongation complex subunit acts_upstream_of_or_within ISO
IEA 		MGI:2388982 (PMID:12242306)
GO_REF:0000107 		RGD
Ensembl		 PMID:12242306 GO_REF:0000107 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (PMID:11124811) RGD PMID:11124811 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (PMID:21059868) RGD PMID:21059868 NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524 		JBrowse link
segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD, shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO
IEA 		MGI:1856658 (PMID:15537664)
GO_REF:0000107 		RGD
Ensembl		 PMID:15537664 GO_REF:0000107 NCBI chr19:33,586,739...33,589,481
Ensembl chr19:33,586,745...33,589,461 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO
IEA 		UniProtKB:P51140 (PMID:8887313)
GO_REF:0000107 		RGD
Ensembl		 PMID:8887313 GO_REF:0000107 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857974|MGI:1932738 (PMID:11262239), (PMID:16079160)
GO_REF:0000107 		RGD
Ensembl		 PMID:11262239 PMID:16079160 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
sensory organ boundary specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntf4 neurotrophin 4 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		PMID:10479455
GO_REF:0000107
MGI:1933845 (PMID:10479455) 		Ensembl
RGD		 PMID:10479455 PMID:10479455 GO_REF:0000107, RGD:8554019 NCBI chr 1:95,893,560...95,896,391
Ensembl chr 1:95,893,457...95,897,243 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:2442827|MGI:95729 (PMID:17395647), (PMID:20159594) RGD PMID:17395647 PMID:20159594 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:2442827|MGI:95728 (PMID:17395647), (PMID:20159594)
GO_REF:0000107 		RGD
Ensembl		 PMID:17395647 PMID:20159594 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:2443231 (PMID:22689656) RGD PMID:22689656 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA 		MGI:95728|MGI:95729 (PMID:20159594)
GO_REF:0000107 		RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:3664273 (PMID:19223390)
GO_REF:0000107 		RGD
Ensembl		 PMID:19223390 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA 		MGI:1932386|MGI:5315748 (PMID:22689656)
GO_REF:0000107 		RGD
Ensembl		 PMID:22689656 GO_REF:0000107 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:15215207)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215207 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:4840420 (PMID:19684112)
GO_REF:0000107 		RGD
Ensembl		 PMID:19684112 GO_REF:0000107 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728 (PMID:15215207)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215207 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:4840420 (PMID:19684112)
GO_REF:0000107 		RGD
Ensembl		 PMID:19684112 GO_REF:0000107 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:1857725 (PMID:11291865) RGD PMID:11291865 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:3612535 (PMID:16368929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16368929 GO_REF:0000107 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO
IEA 		MGI:5448825 (PMID:22949634)
GO_REF:0000107 		RGD
Ensembl		 PMID:22949634 GO_REF:0000107 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857502|MGI:1857848 (PMID:11291865)
GO_REF:0000107 		RGD
Ensembl		 PMID:11291865 GO_REF:0000107 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3580268 (PMID:20346937) 		GO_Central
RGD		 PMID:20346937 GO_REF:0000033 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO
IEA 		MGI:5438570 (PMID:21998026)
GO_REF:0000107 		RGD
Ensembl		 PMID:21998026 GO_REF:0000107 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:1857502 (PMID:11291865) RGD PMID:11291865 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:103,436,729...103,443,349 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3614797 (PMID:20346937)
(PMID:16326386) 		RGD PMID:16326386 PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO
IEA 		MGI:1858049 (PMID:9420335)
GO_REF:0000107 		RGD
Ensembl		 PMID:9420335 GO_REF:0000107 NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO
IEA 		(PMID:20346937)
GO_REF:0000107 		RGD
Ensembl		 PMID:20346937 GO_REF:0000107 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO 		GO_REF:0000107
(PMID:7586755) 		Ensembl
RGD		 PMID:7586755 GO_REF:0000107 NCBI chr14:86,828,137...87,060,682
Ensembl chr14:86,828,139...87,060,800 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:3038950 (PMID:14960495) RGD PMID:14960495 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:103219 (PMID:12925591)
GO_REF:0000107 		RGD
Ensembl		 PMID:12925591 GO_REF:0000107 NCBI chr10:86,818,450...86,837,563
Ensembl chr10:86,818,478...86,837,660 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:103220 (PMID:12925591)
GO_REF:0000107 		RGD
Ensembl		 PMID:12925591 GO_REF:0000107 NCBI chr 6:53,856,760...53,917,467
Ensembl chr 6:53,856,758...53,917,467 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl-interactor 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:15755804)
GO_REF:0000107 		RGD
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr17:85,098,837...85,179,829
Ensembl chr17:85,098,550...85,179,792 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1100864|MGI:1857891 (PMID:15872003) RGD PMID:15872003 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:104779 (PMID:16687486) RGD PMID:16687486 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		(PMID:12636920)
GO_REF:0000107 		RGD
Ensembl		 PMID:12636920 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO
IEA 		MGI:2158343 (PMID:16943278)
GO_REF:0000107 		RGD
Ensembl		 PMID:16943278 GO_REF:0000107 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO 		GO_REF:0000024
(PMID:22072575) 		CAFA
RGD		 PMID:22072575 GO_REF:0000024 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:892014 (PMID:18257070) RGD PMID:18257070 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:23072809)
MGI:1096325 (PMID:15902259) 		UniProt
RGD		 PMID:15902259 PMID:23072809 GO_REF:0000024 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO MGI:1857008 (PMID:15170697), (PMID:9272948) RGD PMID:9272948 PMID:15170697 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Ep300 E1A binding protein p300 acts_upstream_of_or_within ISO MGI:1343101 (PMID:15937931) RGD PMID:15937931 NCBI chr 7:114,987,857...115,058,652
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO
IEA 		MGI:3822451 (PMID:18794329)
GO_REF:0000107 		RGD
Ensembl		 PMID:18794329 GO_REF:0000107 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Foxb1 forkhead box B1 involved_in ISO (PMID:18064677) RGD PMID:18064677 NCBI chr 8:70,407,221...70,409,841
Ensembl chr 8:70,408,186...70,409,781 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO
IEA 		UniProtKB:Q61850 (PMID:11562355)
GO_REF:0000107 		RGD
Ensembl		 PMID:11562355 GO_REF:0000107 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO UniProtKB:Q61572 (PMID:11562355) RGD PMID:11562355 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO
IEA 		MGI:1929432 (PMID:11124112)
GO_REF:0000107 		RGD
Ensembl		 PMID:11124112 GO_REF:0000107 NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2652222|MGI:3046536 (PMID:11641270), (PMID:15170214), (PMID:19779553) RGD PMID:11641270 PMID:15170214 PMID:19779553 NCBI chr10:53,824,124...53,828,934
Ensembl chr10:53,825,574...53,828,097 		JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) RGD PMID:15857914 NCBI chr 1:196,067,163...196,069,169
Ensembl chr 1:196,067,963...196,069,169 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:1276116|MGI:3711317 (PMID:15937931), (PMID:17325035)
GO_REF:0000107 		RGD
Ensembl		 PMID:15937931 PMID:17325035 GO_REF:0000107 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1933764|MGI:98504 (PMID:10090727), (PMID:15545629)
GO_REF:0000107 		RGD
Ensembl		 PMID:10090727 PMID:15545629 GO_REF:0000107 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:23072809)
MGI:3775061 (PMID:18234727) 		UniProt
Ensembl
RGD		 PMID:18234727 PMID:23072809 GO_REF:0000024 GO_REF:0000107 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982|MGI:98958 (PMID:15469977), (PMID:19795512) RGD PMID:15469977 PMID:19795512 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839486 (PMID:20589884)
GO_REF:0000107 		RGD
Ensembl		 PMID:20589884 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:104659|MGI:3580268 (PMID:15902259) RGD PMID:15902259 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603514 (PMID:16000382)
GO_REF:0000107 		RGD
Ensembl		 PMID:16000382 GO_REF:0000107 NCBI chr18:2,075,309...2,199,774
Ensembl chr18:1,802,519...1,920,689 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (PMID:11124811), (PMID:21750544) RGD PMID:11124811 PMID:21750544 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219|MGI:1857973|MGI:2449231 (PMID:10929709), (PMID:19531352), (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 PMID:10929709 PMID:19531352 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within ISO
IEA 		MGI:1857220 (PMID:7588068)
GO_REF:0000107 		RGD
Ensembl		 PMID:7588068 GO_REF:0000107 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) RGD PMID:9621431 NCBI chr15:50,883,661...50,886,253
Ensembl chr15:44,473,851...44,476,441 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:5553357 (PMID:24875805)
GO_REF:0000107 		RGD
Ensembl		 PMID:24875805 GO_REF:0000107 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within ISO MGI:5317888 (PMID:21795391) RGD PMID:21795391 NCBI chr 3:7,992,582...7,995,136
Ensembl chr 3:7,992,552...7,995,133 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO
IEA 		MGI:3801303 (PMID:20484223)
GO_REF:0000107 		RGD
Ensembl		 PMID:20484223 GO_REF:0000107 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:3603176 (PMID:16093716)
GO_REF:0000107 		RGD
Ensembl		 PMID:16093716 GO_REF:0000107 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO
IEA 		(PMID:12591245)
GO_REF:0000107 		RGD
Ensembl		 PMID:12591245 GO_REF:0000107 NCBI chr15:55,198,470...55,203,039
Ensembl chr15:55,198,459...55,205,872 		JBrowse link
G Plxna2 plexin A2 involved_in ISO
IEA 		(PMID:19666519)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666519 GO_REF:0000107 NCBI chr13:106,163,103...106,358,979
Ensembl chr13:106,163,103...106,358,979 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2662305 (PMID:12697902)
GO_REF:0000107 		RGD
Ensembl		 PMID:12697902 GO_REF:0000107 NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2137554 (PMID:9636176)
GO_REF:0000107 		RGD
Ensembl		 PMID:9636176 GO_REF:0000107 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO
IBA 		UniProtKB:A0A803JG39 (PMID:15687260)
GO_REF:0000033 		RGD
GO_Central		 PMID:15687260 GO_REF:0000033 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO
IEA 		MGI:107202 (PMID:16687486)
GO_REF:0000107 		RGD
Ensembl		 PMID:16687486 GO_REF:0000107 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284|MGI:1930934 (PMID:10557208), (PMID:19779553), (PMID:9153393)
GO_REF:0000107 		RGD
Ensembl		 PMID:9153393 PMID:10557208 PMID:19779553 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:10557208), (PMID:19779553) RGD PMID:10557208 PMID:19779553 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1857411 (PMID:19779553) RGD PMID:19779553 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO MGI:3513254 (PMID:17531978)
(PMID:16326386) 		RGD PMID:16326386 PMID:17531978 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:87,974,776...87,978,969 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO
IEA 		(PMID:19666519)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666519 GO_REF:0000107 NCBI chr 4:17,583,212...17,747,234
Ensembl chr 4:17,583,212...17,746,534 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:10654605)
MGI:108078|MGI:1329040 (PMID:16467359), (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:10654605 PMID:16467359 PMID:18257070 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1329040|MGI:892014 (PMID:16467359), (PMID:18257070) 		Ensembl
RGD		 PMID:16467359 PMID:18257070 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IEA 		MGI:3606185 (PMID:28893950)
GO_REF:0000107 		RGD
Ensembl		 PMID:28893950 GO_REF:0000107 NCBI chr 1:169,506,940...169,508,234
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in 		ISO
IBA 		MGI:3044914 (PMID:15155583)
GO_REF:0000033 		RGD
GO_Central		 PMID:15155583 GO_REF:0000033 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058 		JBrowse link
G Tbxt T-box transcription factor T involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1856158|MGI:1857760|MGI:3042264 (PMID:15384171), (PMID:16835439), (PMID:8293872) 		GO_Central
Ensembl
RGD		 PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:83,381,719...83,382,887
Ensembl chr10:83,381,719...83,382,887 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:4456438 (PMID:20178780)
GO_REF:0000107 		RGD
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO
IEA 		MGI:1343101 (PMID:17320900)
GO_REF:0000107 		RGD
Ensembl		 PMID:17320900 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Ttn titin involved_in ISO (PMID:9817758) RGD PMID:9817758 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO
IEA 		MGI:1857088|MGI:1857489 (PMID:12636920), (PMID:16291790), (PMID:8299937)
GO_REF:0000107 		RGD
Ensembl		 PMID:8299937 PMID:12636920 PMID:16291790 GO_REF:0000107 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO
IEA 		MGI:1298218 (PMID:19795512)
GO_REF:0000107 		RGD
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within ISO
IEA 		MGI:1927345 (PMID:17116431)
GO_REF:0000107 		RGD
Ensembl		 PMID:17116431 GO_REF:0000107 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2387501 (PMID:16157277), (PMID:16598713)
GO_REF:0000107 		RGD
Ensembl		 PMID:16157277 PMID:16598713 GO_REF:0000107 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
specification of animal organ identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179766 (PMID:20615956)
GO_REF:0000107 		RGD
Ensembl		 PMID:20615956 GO_REF:0000107 NCBI chr 3:46,350,237...46,368,397
Ensembl chr 3:46,351,213...46,361,041 		JBrowse link
specification of animal organ position term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:17071745)
GO_REF:0000107 		RGD
Ensembl		 PMID:17071745 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO
IEA 		MGI:96184|MGI:96207 (PMID:9520319)
GO_REF:0000107 		RGD
Ensembl		 PMID:9520319 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO
IEA 		(PMID:17071745)
GO_REF:0000107 		RGD
Ensembl		 PMID:17071745 GO_REF:0000107 NCBI chr12:42,540,378...42,555,490
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16790474) 		UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
specification of axis polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Bcor BCL6 co-repressor involved_in ISO
IEA 		(PMID:17517692)
GO_REF:0000107 		RGD
Ensembl		 PMID:17517692 GO_REF:0000107 NCBI chr  X:13,282,431...13,402,254
Ensembl chr  X:10,687,732...10,729,613 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO
IEA 		(PMID:17875669)
GO_REF:0000107 		RGD
Ensembl		 PMID:17875669 GO_REF:0000107 NCBI chr19:15,211,882...15,215,317
Ensembl chr19:15,211,878...15,215,317 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16790474) 		UniProt
Ensembl
RGD		 PMID:16790474 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817 		JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA 		MGI:2449672 (PMID:16790475)
GO_REF:0000107 		RGD
Ensembl		 PMID:16790475 GO_REF:0000107 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO
IEA 		(PMID:11472837)
GO_REF:0000107 		RGD
Ensembl		 PMID:11472837 GO_REF:0000107 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:4346364 (PMID:21761479) RGD PMID:21761479 NCBI chr 1:95,379,542...95,384,532
Ensembl chr 1:95,379,587...95,384,530 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509|MGI:2158472|MGI:95729|MGI:99833 (PMID:11748151), (PMID:15215207), (PMID:16364285) RGD PMID:11748151 PMID:15215207 PMID:16364285 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:95728|MGI:99833 (PMID:15215207), (PMID:16364285)
GO_REF:0000107 		RGD
Ensembl		 PMID:15215207 PMID:16364285 GO_REF:0000107 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1859153 (PMID:21761479) RGD PMID:21761479 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within ISO
IEA 		MGI:4441401 (PMID:21761479)
GO_REF:0000107 		RGD
Ensembl		 PMID:21761479 GO_REF:0000107 NCBI chr 2:123,600,972...123,685,331
Ensembl chr 2:123,609,807...123,682,676 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO MGI:2137533|MGI:2682064|MGI:95728|MGI:95729 (PMID:14603322), (PMID:15755804), (PMID:16364285) RGD PMID:14603322 PMID:15755804 PMID:16364285 NCBI chr 9:35,943,522...35,967,367
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rfx4 regulatory factor X4 acts_upstream_of_or_within ISO MGI:3799278 (PMID:19887680) RGD PMID:19887680 NCBI chr 7:18,853,065...19,015,378
Ensembl chr 7:18,853,322...19,014,967 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA
IEA
ISO 		PMID:9230312
GO_REF:0000107
MGI:1857796 (PMID:11748151) 		Ensembl
RGD		 PMID:11748151 PMID:9230312 GO_REF:0000107, RGD:8553789 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
MGI:2176255 (PMID:19286674)
(PMID:21209331) 		Ensembl
RGD		 PMID:19286674 PMID:21209331 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO
IEA 		MGI:3619046 (PMID:16459298)
GO_REF:0000107 		RGD
Ensembl		 PMID:16459298 GO_REF:0000107 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:19286674) RGD PMID:19286674 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Reln reelin acts_upstream_of_or_within
involved_in 		IEP
ISO
ISS 		MGI:1856398 (PMID:16580148)
GO_REF:0000024 		RGD
UniProt		 PMID:16580148 PMID:14648677 GO_REF:0000024, RGD:2317803 NCBI chr 4:12,736,177...13,162,956
Ensembl chr 4:12,736,130...13,162,211 		JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:96785 (PMID:11719201)
GO_REF:0000107 		RGD
Ensembl		 PMID:11719201 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:96785 (PMID:11719201), (PMID:16855091)
GO_REF:0000107 		RGD
Ensembl		 PMID:11719201 PMID:16855091 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:2150162 (PMID:18701439)
GO_REF:0000107 		RGD
Ensembl		 PMID:18701439 GO_REF:0000107 NCBI chr14:33,123,799...33,126,151
Ensembl chr14:33,124,381...33,126,105 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1890208|MGI:88177|MGI:88180 (PMID:11719201)
GO_REF:0000107 		RGD
Ensembl		 PMID:11719201 GO_REF:0000107 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753|MGI:3665330 (PMID:26166575) RGD PMID:26166575 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856155 (PMID:18701439)
GO_REF:0000107 		RGD
Ensembl		 PMID:18701439 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IMP
IEA
ISO 		GO_REF:0000107
MGI:1857796 (PMID:11060228) 		Ensembl
RGD		 PMID:11060228 PMID:9811591 GO_REF:0000107, RGD:2306311 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18694563) RGD PMID:18694563 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,436,843...8,437,954
Ensembl chr17:8,431,465...8,435,348
Ensembl chr 8:8,431,465...8,435,348 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,368,096...8,369,615
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:71,289,539...71,290,872
Ensembl chr 8:62,393,177...62,395,339 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,438,622...8,441,750
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO 		GO_REF:0000024
(PMID:8395349) 		UniProt
RGD		 PMID:8395349 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO
IEA 		MGI:1934917 (PMID:16316641)
GO_REF:0000107 		RGD
Ensembl		 PMID:16316641 GO_REF:0000107 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451 		JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO
IEA 		MGI:2137037 (PMID:16319111)
GO_REF:0000107 		RGD
Ensembl		 PMID:16319111 GO_REF:0000107 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO
IEA 		MGI:2670663 (PMID:16319111)
GO_REF:0000107 		RGD
Ensembl		 PMID:16319111 GO_REF:0000107 NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO
IEA 		(PMID:15337776)
GO_REF:0000107 		RGD
Ensembl		 PMID:15337776 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
ventral midline determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in IEA
ISO 		GO_REF:0000107
(PMID:11517919) 		Ensembl
RGD		 PMID:11517919 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16020526) 		UniProt
Ensembl
RGD		 PMID:16020526 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in ISO
IEA 		UniProtKB:Q8K3Q3 (PMID:17728344)
GO_REF:0000107 		RGD
Ensembl		 PMID:17728344 GO_REF:0000107 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO
IEA 		(PMID:16020526), (PMID:17728344)
GO_REF:0000107 		RGD
Ensembl		 PMID:16020526 PMID:17728344 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1932100 (PMID:10217145)
GO_REF:0000107 		RGD
Ensembl		 PMID:10217145 GO_REF:0000107 NCBI chr 3:134,619,701...134,630,282
Ensembl chr 3:134,620,039...134,622,411 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2182329 (PMID:11239429)
GO_REF:0000107 		RGD
Ensembl		 PMID:11239429 GO_REF:0000107 NCBI chr 1:99,348,638...99,354,173
Ensembl chr 1:99,349,608...99,354,038 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO
IEA 		MGI:4420993 (PMID:22932389)
GO_REF:0000107 		RGD
Ensembl		 PMID:22932389 GO_REF:0000107 NCBI chr 1:223,244,340...223,264,254
Ensembl chr 1:223,248,747...223,262,530 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within ISO MGI:2182858 (PMID:11239430) RGD PMID:11239430 NCBI chr 4:81,416,590...81,420,967
Ensembl chr 4:81,416,590...81,420,967 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:95729 (PMID:15215207) RGD PMID:15215207 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:95728 (PMID:15215207) RGD PMID:15215207 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO
IEA 		(PMID:19666821)
GO_REF:0000107 		RGD
Ensembl		 PMID:19666821 GO_REF:0000107 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:1856155 (PMID:9230312) RGD PMID:9230312 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:3653406 (PMID:20844123) RGD PMID:20844123 NCBI chr16:77,135,577...77,139,592
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO MGI:4840420 (PMID:19684112) RGD PMID:19684112 NCBI chr 1:245,257,725...245,355,576
Ensembl chr 1:245,257,768...245,355,577 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO
IEA 		(PMID:19386662)
GO_REF:0000107 		RGD
Ensembl		 PMID:19386662 GO_REF:0000107 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19386662) 		Ensembl
RGD		 PMID:19386662 GO_REF:0000107 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO
IEA 		(PMID:19386662)
GO_REF:0000107 		RGD
Ensembl		 PMID:19386662 GO_REF:0000107 NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
vertebrate eye-specific patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qa complement C1q A chain involved_in ISO (PMID:18083105) RGD PMID:18083105 NCBI chr 5:149,133,635...149,136,482
Ensembl chr 5:149,133,636...149,136,534 		JBrowse link
G C3 complement C3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:18083105) 		Ensembl
RGD		 PMID:18083105 GO_REF:0000107 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:22632727) RGD PMID:22632727 NCBI chr 1:182,659,047...182,709,501
Ensembl chr 1:182,659,000...182,709,503 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:892014 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982 (PMID:15469977) RGD PMID:15469977 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:108078|MGI:1329040 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr16:68,575,763...68,614,180
Ensembl chr16:68,575,763...68,614,286 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:1329040|MGI:892014 (PMID:18257070)
GO_REF:0000107 		RGD
Ensembl		 PMID:18257070 GO_REF:0000107 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578145 (PMID:16831833)
GO_REF:0000107 		RGD
Ensembl		 PMID:16831833 GO_REF:0000107 NCBI chr 3:85,824,333...85,898,748
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO
IEA 		MGI:2181754|MGI:97359 (PMID:10809672)
GO_REF:0000107 		RGD
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr 1:128,839,742...129,038,087
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in ISO
IEA 		(PMID:9436979)
GO_REF:0000107 		RGD
Ensembl		 PMID:9436979 GO_REF:0000107 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad6 SMAD family member 6 involved_in ISO
IEA 		(PMID:9436979)
GO_REF:0000107 		RGD
Ensembl		 PMID:9436979 GO_REF:0000107 NCBI chr 8:64,450,114...64,519,673
Ensembl chr 8:64,450,114...64,519,763 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    multicellular organismal process 9031
      pattern specification process 502
        axis specification + 105
        cell fate commitment involved in pattern specification + 14
        embryonic pattern specification + 84
        head segmentation + 0
        imaginal disc lineage restriction + 0
        internode patterning 0
        intracellular mRNA localization involved in pattern specification process + 0
        lung pattern specification process + 1
        maintenance of left/right asymmetry + 0
        neural plate pattern specification + 9
        ommatidial rotation 0
        pattern specification involved in kidney development + 8
        regionalization + 455
        regulation of R8 cell spacing in compound eye + 0
        renal system pattern specification + 8
        segment specification + 15
        specification of axis polarity + 5
        specification of symmetry + 145
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          pattern specification process 502
            axis specification + 105
            cell fate commitment involved in pattern specification + 14
            embryonic pattern specification + 84
            head segmentation + 0
            imaginal disc lineage restriction + 0
            internode patterning 0
            intracellular mRNA localization involved in pattern specification process + 0
            lung pattern specification process + 1
            maintenance of left/right asymmetry + 0
            neural plate pattern specification + 9
            ommatidial rotation 0
            pattern specification involved in kidney development + 8
            regionalization + 455
            regulation of R8 cell spacing in compound eye + 0
            renal system pattern specification + 8
            segment specification + 15
            specification of axis polarity + 5
            specification of symmetry + 145
paths to the root