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ONTOLOGY REPORT - ANNOTATIONS


Term:segment specification
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Accession:GO:0007379 term browser browse the term
Definition:The process in which segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes.



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segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:2429760 (PMID:12421720) RGD PMID:12421720 NCBI chr10:55,222,245...55,231,506
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Hoxa2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857626 (PMID:9367425)
Ensembl
RGD
PMID:9367425 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:81,262,768...81,265,044
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:2157803 (PMID:12701106) RGD PMID:12701106 NCBI chr 3:169,417,890...169,419,810
Ensembl chr 3:148,998,122...149,000,031
JBrowse link
G Mllt3 MLLT3, super elongation complex subunit acts_upstream_of_or_within ISO MGI:2388982 (PMID:12242306) RGD PMID:12242306 NCBI chr 5:107,305,008...107,561,352
Ensembl chr 5:102,260,011...102,515,361
JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within ISO MGI:1933263 (PMID:11124811) RGD PMID:11124811 NCBI chr 6:39,631,868...39,632,508
Ensembl chr 6:33,912,787...33,913,427
JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in ISO (PMID:21059868) RGD PMID:21059868 NCBI chr14:1,784,218...1,828,463
Ensembl chr14:1,640,746...1,683,524
JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in IEA
ISO
GO_REF:0000107
(PMID:7586755)
Ensembl
RGD
PMID:7586755 GO_REF:0000107 NCBI chr14:91,041,721...91,274,272
Ensembl chr14:86,828,139...87,060,800
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3038950 (PMID:14960495)
Ensembl
RGD
PMID:14960495 GO_REF:0000107 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO MGI:103219 (PMID:12925591) RGD PMID:12925591 NCBI chr10:87,318,668...87,338,169
Ensembl chr10:86,818,478...86,837,660
JBrowse link
G Meox2 mesenchyme homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103220 (PMID:12925591)
Ensembl
RGD
PMID:12925591 GO_REF:0000107 NCBI chr 6:59,584,025...59,644,722
Ensembl chr 6:53,856,758...53,917,467
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:31,294,615...31,300,444
Ensembl chr 1:31,294,615...31,300,444
JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:30,660,960...30,666,378
Ensembl chr 1:30,660,960...30,666,378
JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:31,384,803...31,388,241
Ensembl chr19:15,211,878...15,215,317
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:16790474)
UniProt
RGD
PMID:16790474 GO_REF:0000024 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:32,373,816...32,380,817
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    multicellular organismal process 9002
      pattern specification process 492
        segment specification 15
          somite specification 4
          specification of nephron tubule identity + 5
          specification of segmental identity, head + 0
          specification of segmental identity, trunk + 0
Path 2
Term Annotations click to browse term
  biological_process 20553
    developmental process 7140
      anatomical structure development 6638
        multicellular organism development 5350
          pattern specification process 492
            regionalization 446
              segmentation 112
                segment specification 15
                  somite specification 4
                  specification of nephron tubule identity + 5
                  specification of segmental identity, head + 0
                  specification of segmental identity, trunk + 0
paths to the root