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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal complex assembly
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Accession:GO:0007130 term browser browse the term
Definition:The cell cycle process in which the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination.
Synonyms:exact_synonym: synaptonemal complex formation


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synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago4 argonaute RISC component 4 acts_upstream_of_or_within ISO MGI:5438526 (PMID:22863743) RGD PMID:22863743 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:18678708)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:18678708 GO_REF:0000024 GO_REF:0000107 NCBI chr20:3,675,938...3,690,414
Ensembl chr20:3,675,938...3,688,657 		JBrowse link
G C14h1orf146 similar to human chromosome 1 open reading frame 146 involved_in IBA
ISO		 GO_REF:0000033
(PMID:30949703)		 GO_Central
RGD		 PMID:30949703 GO_REF:0000033 NCBI chr14:2,230,404...2,250,420
Ensembl chr14:2,231,451...2,270,782 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO MGI:3606747 (PMID:11702780), (PMID:12815066) RGD PMID:11702780 PMID:12815066 NCBI chr 1:135,300,048...135,407,688
Ensembl chr 1:135,300,461...135,409,760 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO MGI:3718790 (PMID:17599069) RGD PMID:17599069 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21478856)		 UniProt
RGD		 PMID:21478856 GO_REF:0000024 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (PMID:27760146) RGD PMID:27760146 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300 		JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (PMID:26742488) RGD PMID:26742488 NCBI chr10:87,628,807...87,646,485
Ensembl chr10:87,628,875...87,646,752 		JBrowse link
G Mlh3 mutL homolog 3 acts_upstream_of_or_within ISO MGI:2384218 (PMID:16260499) RGD PMID:16260499 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO MGI:1349669|MGI:1929645 (PMID:22711701), (PMID:24589552) RGD PMID:22711701 PMID:24589552 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rec8 REC8 meiotic recombination protein acts_upstream_of_or_within ISO MGI:1349669|MGI:3652039 (PMID:22711701), (PMID:24589552) RGD PMID:22711701 PMID:24589552 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Shoc1 shortage in chiasmata 1 involved_in ISO (PMID:35485979) RGD PMID:35485979 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 involved_in ISO (PMID:33508233) RGD PMID:33508233 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Spo11 SPO11 initiator of meiotic double strand breaks acts_upstream_of_or_within ISO MGI:1929645|MGI:2178805|MGI:3652039 (PMID:24589552), (PMID:27760146) RGD PMID:24589552 PMID:27760146 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 involved_in IBA
ISO		 GO_REF:0000033
(PMID:21637789)		 GO_Central
RGD		 PMID:21637789 GO_REF:0000033 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 GO_REF:0000024
(PMID:15937223), (PMID:15944401)
GO_REF:0000002
MGI:105931|MGI:109542|MGI:3580000 (PMID:22164254)		 UniProt
RGD
InterPro		 PMID:15937223 PMID:15944401 PMID:22164254 GO_REF:0000002 GO_REF:0000024 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within
involved_in		 ISO MGI:1913904 (PMID:22164254)
(PMID:10678170)		 RGD PMID:10678170 PMID:22164254 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (PMID:23791195) RGD PMID:23791195 NCBI chr 7:11,032,931...11,038,917
Ensembl chr 7:11,032,898...11,039,869 		JBrowse link
G Terb2 telomere repeat binding bouquet formation protein 2 acts_upstream_of_or_within ISO MGI:6362934|MGI:6362936 (PMID:30718482) RGD PMID:30718482 NCBI chr 3:109,138,343...109,156,700
Ensembl chr 3:109,138,343...109,156,683 		JBrowse link
G Tex11 testis expressed 11 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3526163 (PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:109542|MGI:3811722 (PMID:22164254)		 GO_Central
RGD		 PMID:22164254 GO_REF:0000033 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3526165 (PMID:18283110)		 GO_Central
RGD		 PMID:18283110 GO_REF:0000033 NCBI chr16:58,598,991...58,659,005
Ensembl chr16:58,598,989...58,658,467 		JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20711356)		 UniProt
RGD		 PMID:20711356 GO_REF:0000024 NCBI chr 1:29,357,093...29,402,078
Ensembl chr 1:29,357,130...29,402,074 		JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:109542 (PMID:22164254)		 Ensembl
GO_Central
RGD		 PMID:22164254 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (PMID:22164254) RGD PMID:22164254 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    reproductive process 1970
      meiotic cell cycle process 247
        chromosome organization involved in meiotic cell cycle 75
          synaptonemal complex assembly 26
            lateral element assembly 2
            positive regulation of synaptonemal complex assembly 0
            regulation of synaptonemal complex assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 20536
    cellular process 19526
      cellular component organization or biogenesis 7187
        cellular component organization 6903
          organelle organization 3691
            organelle fission 518
              nuclear division 459
                meiotic nuclear division 217
                  meiosis I 137
                    homologous chromosome segregation 75
                      homologous chromosome pairing at meiosis 59
                        synaptonemal complex assembly 26
                          lateral element assembly 2
                          positive regulation of synaptonemal complex assembly 0
                          regulation of synaptonemal complex assembly + 0
paths to the root