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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar acidification
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Accession:GO:0007035 term browser browse the term
Definition:Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion.

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vacuolar acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:1,561,104...1,607,693
Ensembl chrNW_004624795:1,560,995...1,608,067 		JBrowse link
G Atp6v0a2 ATPase H+ transporting V0 subunit a2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:23,471,697...23,501,018
Ensembl chrNW_004624747:23,471,403...23,504,576 		JBrowse link
G Atp6v0a4 ATPase H+ transporting V0 subunit a4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624765:19,149,353...19,219,242
Ensembl chrNW_004624765:19,149,589...19,194,158 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624762:2,445,840...2,480,377
Ensembl chrNW_004624762:2,443,765...2,480,464 		JBrowse link
G Atp6v1b2 ATPase H+ transporting V1 subunit B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:15,910,189...15,933,975
Ensembl chrNW_004624758:15,910,132...15,935,160 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within ISO (PMID:19197003) MGI PMID:19197003 NCBI chrNW_004624764:9,088,352...9,149,194 JBrowse link
G Dmxl1 Dmx like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:2,438,874...2,610,987
Ensembl chrNW_004624733:2,440,068...2,610,899 		JBrowse link
G Dmxl2 Dmx like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:8,702,288...8,843,807
Ensembl chrNW_004624731:8,702,137...8,842,653 		JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:6,612,452...6,625,047
Ensembl chrNW_004624823:6,612,452...6,625,300 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:18,809,626...18,820,360
Ensembl chrNW_004624767:18,809,689...18,820,390 		JBrowse link
lysosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,952,313...14,975,678
Ensembl chrNW_004624762:14,952,002...14,975,900 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Cln5 CLN5 intracellular trafficking protein involved_in ISO (PMID:11722572) UniProt PMID:11722572 NCBI chrNW_004624751:23,395,284...23,404,798
Ensembl chrNW_004624751:23,396,789...23,404,906 		JBrowse link
G Cln6 CLN6 transmembrane ER protein involved_in ISO (PMID:11722572) UniProt PMID:11722572 NCBI chrNW_004624781:4,866,896...4,879,321
Ensembl chrNW_004624781:4,866,927...4,879,321 		JBrowse link
G Creg1 cellular repressor of E1A stimulated genes 1 acts_upstream_of_or_within ISO (PMID:33966596) MGI PMID:33966596 NCBI chrNW_004624826:5,593,190...5,605,946
Ensembl chrNW_004624826:5,589,791...5,605,893 		JBrowse link
G Grn granulin precursor involved_in ISO (PMID:28073925) UniProt PMID:28073925 NCBI chrNW_004624795:704,066...708,721
Ensembl chrNW_004624795:704,252...707,165 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 involved_in ISO (PMID:37390818) UniProt PMID:37390818 NCBI chrNW_004624793:661,322...675,603
Ensembl chrNW_004624793:661,342...675,675 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 involved_in ISO (PMID:37390818) UniProt PMID:37390818 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 involved_in ISO (PMID:11722572) UniProt PMID:11722572 NCBI chrNW_004624764:22,542,892...22,577,077
Ensembl chrNW_004624764:22,543,857...22,577,121 		JBrowse link
G Snapin SNAP associated protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624885:3,490,321...3,491,963
Ensembl chrNW_004624885:3,490,321...3,491,946 		JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624827:7,015,267...7,043,853
Ensembl chrNW_004624827:7,014,842...7,041,871 		JBrowse link
G Tmem9 transmembrane protein 9 involved_in ISO (PMID:30374053) UniProt PMID:30374053 NCBI chrNW_004624807:9,525,770...9,544,757
Ensembl chrNW_004624807:9,525,855...9,544,757 		JBrowse link
G Vma12 vacuolar ATPase assembly factor VMA12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624786:961,888...965,911
Ensembl chrNW_004624786:961,890...966,430 		JBrowse link
G Vma22 vacuolar ATPase assembly factor VMA22 involved_in ISO (PMID:28296633) UniProt PMID:28296633 NCBI chrNW_004624732:14,469,377...14,474,540
Ensembl chrNW_004624732:14,466,079...14,474,561 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    biological regulation 11838
      regulation of biological quality 3017
        regulation of intracellular pH 78
          intracellular pH reduction 45
            vacuolar acidification 24
              lysosomal lumen acidification 14
Path 2
Term Annotations click to browse term
  biological_process 17650
    homeostatic process 1826
      chemical homeostasis 1111
        monoatomic ion homeostasis 618
          monoatomic cation homeostasis 604
            regulation of pH 101
              regulation of cellular pH 86
                regulation of intracellular pH 78
                  intracellular pH reduction 45
                    vacuolar acidification 24
                      lysosomal lumen acidification 14
paths to the root