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ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasm organization
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Accession:GO:0007028 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Synonyms:exact_synonym: cytoplasm organisation
 related_synonym: cytoplasm organization and biogenesis


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cytoplasm organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Capza3 capping actin protein of muscle Z-line subunit alpha 3 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:172,929,273...172,930,486
Ensembl chr 4:172,928,887...172,932,535 		JBrowse link
G Kif5b kinesin family member 5B involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2159694 (PMID:9657148)		 Ensembl
RGD		 PMID:9657148 GO_REF:0000107 NCBI chr17:51,489,904...51,527,508
Ensembl chr17:51,489,944...51,527,508 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:19416848) RGD PMID:19416848 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Padi6 peptidyl arginine deiminase 6 acts_upstream_of_or_within ISO MGI:3806009 (PMID:18599511) RGD PMID:18599511 NCBI chr 5:153,021,855...153,037,443
Ensembl chr 5:153,021,965...153,037,414 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO MGI:3584037 (PMID:15989966) RGD PMID:15989966 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Tfcp2l1 transcription factor CP2-like 1 acts_upstream_of_or_within ISO MGI:3707684 (PMID:17079272) RGD PMID:17079272 NCBI chr13:29,733,813...29,793,870
Ensembl chr13:29,733,840...29,793,870 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:44,578,536...44,581,187
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:21383078)		 Ensembl
UniProt
RGD		 PMID:21383078 GO_REF:0000024 GO_REF:0000107 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
vitellogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv6 ETS variant transcription factor 6 acts_upstream_of_or_within ISO MGI:2177950 (PMID:9250681) RGD PMID:9250681 NCBI chr 4:166,849,031...167,085,211
Ensembl chr 4:166,847,686...167,084,992 		JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2385824 (PMID:11044407) RGD PMID:11044407 NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO MGI:2155441 (PMID:9030684) RGD PMID:9030684 NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107 		JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 acts_upstream_of_or_within ISO MGI:3769389 (PMID:17967885) RGD PMID:17967885 NCBI chr16:1,027,083...1,232,616
Ensembl chr16:1,027,325...1,232,597 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20537
    cellular process 19526
      cellular component organization or biogenesis 7187
        cellular component organization 6903
          cytoplasm organization 16
            pole plasm assembly + 6
            vitellogenesis + 4
paths to the root