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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA damage response
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Accession:GO:0006974 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
Synonyms:exact_synonym: cellular DNA damage response;   cellular response to DNA damage stimulus;   response to genotoxic stress
 broad_synonym: response to DNA damage stimulus
 alt_id: GO:0034984

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DNA damage response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,258,932...7,435,658
Ensembl chr12:7,256,648...7,312,734 		JBrowse link
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:31,852,411...31,875,968
Ensembl chr 7:31,853,490...31,875,189 		JBrowse link
G ACER2 alkaline ceramidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,286,802...60,323,359
Ensembl chr12:60,283,174...60,321,817 		JBrowse link
G AIM2 absent in melanoma 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:27846608) Ensembl
UniProt		 PMID:27846608 GO_REF:0000107 NCBI chr20:4,759,746...4,884,460
Ensembl chr20:4,873,008...4,884,764 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 involved_in ISO PMID:20605787 UniProt PMID:20605787 RGD:10402036 NCBI chr24:82,704,087...82,730,711
Ensembl chr24:82,704,068...82,727,698 		JBrowse link
G ALKBH7 alkB homolog 7 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:5,988,610...5,991,194
Ensembl chr 6:5,988,371...5,991,136 		JBrowse link
G ALKBH8 alkB homolog 8, tRNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:98,929,404...98,996,932
Ensembl chr 1:98,931,375...98,991,732 		JBrowse link
G ANKLE1 ankyrin repeat and LEM domain containing 1 involved_in
NOT|involved_in 		IEA
ISO 		(PMID:27010503) Ensembl
UniProt		 PMID:27010503 GO_REF:0000107 NCBI chr 6:15,788,861...15,794,825
Ensembl chr 6:15,789,355...15,795,025 		JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:58,407,323...58,431,551
Ensembl chr 1:58,421,847...58,431,144 		JBrowse link
G APC APC regulator of WNT signaling pathway involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:15,992,437...16,135,117
Ensembl chr23:16,042,287...16,137,067 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr29:20,978,878...20,981,393 JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:51,077,496...51,084,787
Ensembl chr  X:51,077,025...51,084,783 		JBrowse link
G APLF aprataxin and PNKP like factor involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G APTX aprataxin involved_in IEA UniProt GO_REF:0000043 NCBI chr12:47,239,094...47,346,528
Ensembl chr12:47,258,798...47,287,102 		JBrowse link
G ARMT1 acidic residue methyltransferase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:78,912,208...78,929,746
Ensembl chr13:78,911,651...78,929,897 		JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit acts_upstream_of_or_within ISO (PMID:17500065) MGI PMID:17500065 NCBI chr 8:36,125,359...36,163,142 JBrowse link
G ASH2L ASH2 like, histone lysine methyltransferase complex subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 8:36,126,429...36,153,481 JBrowse link
G ATAD3A ATPase family AAA domain containing 3A involved_in ISO (PMID:37832546) UniProt PMID:37832546 NCBI chr20:129,965,964...129,987,866 JBrowse link
G ATAD3A ATPase family AAA domain containing 3A involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:129,974,849...129,987,167 JBrowse link
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:25,536,911...25,597,911
Ensembl chr16:25,538,131...25,597,695 		JBrowse link
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:60,644,623...60,734,465
Ensembl chr10:60,644,635...60,734,475 		JBrowse link
G ATM ATM serine/threonine kinase involved_in
acts_upstream_of_or_within 		IEA
ISO 		UniProt
Ensembl
InterPro
RGD		 PMID:12915485 PMID:19151707 PMID:19557000 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 RGD:10053571 RGD:1599370 RGD:2316101 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G ATR ATR serine/threonine kinase acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15983387) MGI
UniProt
Ensembl		 PMID:15983387 GO_REF:0000043 GO_REF:0000107 NCBI chr15:48,048,785...48,173,120
Ensembl chr15:48,048,882...48,173,137 		JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:66,449,830...66,737,220
Ensembl chr  X:66,448,449...66,737,164 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:79,277,238...79,732,996
Ensembl chr14:79,289,043...79,732,891 		JBrowse link
G BATF basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:52,761,569...52,785,999
Ensembl chr24:52,761,651...52,785,978 		JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:12952892)
(PMID:9454845) 		MGI PMID:9454845 PMID:12952892 NCBI chr 6:42,186,028...42,193,105 JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 6:42,186,238...42,194,115 JBrowse link
G BAZ1B bromodomain adjacent to zinc finger domain 1B involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr28:9,533,802...9,617,164
Ensembl chr28:9,534,114...9,617,190 		JBrowse link
G BBC3 BCL2 binding component 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:40,560,550...40,572,428
Ensembl chr 6:40,561,274...40,567,853 		JBrowse link
G BCCIP BRCA2 and CDKN1A interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:118,450,788...118,479,521
Ensembl chr 9:118,450,789...118,470,697 		JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BCL3 BCL3 transcription coactivator involved_in ISO (PMID:16384933) UniProt PMID:16384933 NCBI chr 6:38,228,137...38,243,767 JBrowse link
G BCL3 BCL3 transcription coactivator involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:38,229,459...38,244,150 JBrowse link
G BCL6 BCL6 transcription repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:81,997,659...82,022,059
Ensembl chr15:81,998,545...82,009,946 		JBrowse link
G BCLAF1 BCL2 associated transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:37,133,898...37,165,296
Ensembl chr13:37,143,772...37,166,793 		JBrowse link
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BOD1L1 biorientation of chromosomes in cell division 1 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:36,560,501...36,619,215
Ensembl chr27:36,560,749...36,620,191 		JBrowse link
G BRAT1 BRCA1 associated ATM activator 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr28:18,945,857...18,964,077
Ensembl chr28:18,946,072...18,961,182 		JBrowse link
G BRCA1 BRCA1 DNA repair associated acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:23271346) MGI
InterPro
UniProt		 PMID:23271346 GO_REF:0000002 GO_REF:0000043 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G BRD4 bromodomain containing 4 involved_in ISO (PMID:23728299) UniProt PMID:23728299 NCBI chr 6:13,836,332...13,883,459
Ensembl chr 6:13,836,324...13,873,877 		JBrowse link
G BRSK1 BR serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,888,813...47,915,019
Ensembl chr 6:47,888,920...47,917,920 		JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:26,032,404...26,036,500
Ensembl chr25:26,034,632...26,036,538 		JBrowse link
G CASP3 caspase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:130,589,592...130,610,845
Ensembl chr 7:130,591,166...130,610,899 		JBrowse link
G CASP9 caspase 9 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr20:116,772,819...116,798,402
Ensembl chr20:116,772,155...116,798,930 		JBrowse link
G CBL Cbl proto-oncogene ISO RGD PMID:19546888 RGD:11038823 NCBI chr 1:110,581,049...110,679,284
Ensembl chr 1:110,581,143...110,674,481 		JBrowse link
G CBX1 chromobox 1 involved_in ISO (PMID:27248496) UniProt PMID:27248496 NCBI chr16:68,471,298...68,508,180 JBrowse link
G CBX1 chromobox 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:68,472,669...68,508,137 JBrowse link
G CBX3 chromobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:32,154,707...32,166,843
Ensembl chr21:32,155,839...32,166,114 		JBrowse link
G CBX5 chromobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,350,440...50,396,595
Ensembl chr11:50,353,638...50,396,608 		JBrowse link
G CCDC13 coiled-coil domain containing 13 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:4,164,828...4,228,692
Ensembl chr22:4,165,416...4,228,483 		JBrowse link
G CCND1 cyclin D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:4,909,616...4,922,272
Ensembl chr 1:4,907,353...4,922,357 		JBrowse link
G CCNK cyclin K acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:77,436,569...77,466,703
Ensembl chr24:77,436,479...77,467,322 		JBrowse link
G CDK1 cyclin dependent kinase 1 involved_in ISO (PMID:19202191) UniProt PMID:19202191 NCBI chr 9:70,475,736...70,492,947 JBrowse link
G CDK2 cyclin dependent kinase 2 involved_in ISO
IEA 		RGD
UniProt		 PMID:19151707 GO_REF:0000043 RGD:10053571 NCBI chr11:51,905,085...51,910,209
Ensembl chr11:51,905,115...51,909,907 		JBrowse link
G CDK3 cyclin dependent kinase 3 acts_upstream_of_or_within ISO (PMID:24550317) MGI PMID:24550317 NCBI chr16:45,681,006...45,686,958 JBrowse link
G CDK3 cyclin dependent kinase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr16:45,680,997...45,686,327 JBrowse link
G CDK5 cyclin dependent kinase 5 ISO RGD PMID:19151707 RGD:10053571 NCBI chr21:119,235,687...119,240,163 JBrowse link
G CDK6 cyclin dependent kinase 6 ISO RGD PMID:19151707 RGD:10053571 NCBI chr21:56,167,731...56,403,976
Ensembl chr21:56,170,450...56,393,808 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:35,445,668...35,454,334
Ensembl chr17:35,445,223...35,454,342 		JBrowse link
G CDKN2AIP CDKN2A interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:129,429,535...129,433,687
Ensembl chr 7:129,429,533...129,435,285 		JBrowse link
G CENPS centromere protein S involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr20:121,333,554...121,343,893
Ensembl chr20:121,340,995...121,353,902
Ensembl chr20:121,340,995...121,353,902 		JBrowse link
G CENPX centromere protein X involved_in IEA UniProt GO_REF:0000043 NCBI chr16:73,905,670...73,910,622
Ensembl chr16:73,905,600...73,910,322 		JBrowse link
G CEP63 centrosomal protein 63 involved_in IEA UniProt GO_REF:0000043 NCBI chr15:55,821,117...55,892,951
Ensembl chr15:55,821,487...55,892,398 		JBrowse link
G CGAS cyclic GMP-AMP synthase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:4,134,405...4,174,281
Ensembl chr 6:4,137,738...4,174,988 		JBrowse link
G CHCHD6 coiled-coil-helix-coiled-coil-helix domain containing 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:54,019,128...54,276,242
Ensembl chr22:54,025,361...54,276,197 		JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118
G CHD2 chromodomain helicase DNA binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr29:11,436,170...11,579,468
Ensembl chr29:11,450,799...11,579,594 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:11790307), (PMID:12529385) UniProt
MGI		 PMID:11790307 PMID:12529385 GO_REF:0000043 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G CHEK2 checkpoint kinase 2 acts_upstream_of_or_within
involved_in 		ISO (PMID:24550317)
(PMID:16481012) 		MGI
UniProt		 PMID:16481012 PMID:24550317 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G CIB1 calcium and integrin binding 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:8,777,202...8,781,027
Ensembl chr29:8,777,436...8,781,030 		JBrowse link
G CIP2A cellular inhibitor of PP2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:72,192,788...72,234,020
Ensembl chr22:72,193,060...72,231,673 		JBrowse link
G CLOCK clock circadian regulator involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:13,015,198...13,134,741
Ensembl chr 7:13,051,454...13,127,240 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:18411307), (PMID:18583988), (PMID:20545769), (PMID:30898438), (PMID:35597237) UniProt PMID:18411307 PMID:18583988 PMID:20545769 PMID:30898438 PMID:35597237 NCBI chr 2:55,982,259...56,047,023 JBrowse link
G CTC1 CST telomere replication complex component 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:7,594,493...7,618,202
Ensembl chr16:7,594,219...7,615,754 		JBrowse link
G CTLA4 cytotoxic T-lymphocyte associated protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:89,637,176...89,644,436
Ensembl chr10:89,638,314...89,642,344 		JBrowse link
G CUL4A cullin 4A involved_in ISO (PMID:22118460) ComplexPortal PMID:22118460 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G CUNH10orf90 chromosome unknown C10orf90 homolog involved_in ISO (PMID:20154723) UniProt PMID:20154723 NCBI chr 9:119,049,797...119,290,121
Ensembl chr 9:119,050,676...119,136,762 		JBrowse link
G CUNH11orf54 chromosome unknown C11orf54 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:84,993,668...85,014,743
Ensembl chr 1:84,999,541...85,013,322 		JBrowse link
G CYREN cell cycle regulator of NHEJ involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:103,838,218...103,843,151
Ensembl chr21:103,838,988...103,842,620 		JBrowse link
G DCLRE1A DNA cross-link repair 1A involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:106,713,857...106,735,268
Ensembl chr 9:106,713,895...106,731,999 		JBrowse link
G DCLRE1B DNA cross-link repair 1B involved_in IEA UniProt GO_REF:0000043 NCBI chr20:19,750,106...19,757,190
Ensembl chr20:19,748,898...19,756,901 		JBrowse link
G DCLRE1C DNA cross-link repair 1C involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:14,929,221...14,974,791
Ensembl chr 9:14,929,317...14,965,443 		JBrowse link
G DCUN1D5 defective in cullin neddylation 1 domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:94,436,498...94,467,003
Ensembl chr 1:94,436,784...94,466,989 		JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:12,508,712...12,543,127
Ensembl chr 1:12,508,443...12,544,913 		JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:18,071,011...18,096,660
Ensembl chr 1:18,071,383...18,096,595 		JBrowse link
G DDIAS DNA damage induced apoptosis suppressor acts_upstream_of_or_within ISO (PMID:17515607) MGI PMID:17515607 NCBI chr 1:74,105,911...74,139,190
Ensembl chr 1:74,119,020...74,138,862 		JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:9,260,206...9,290,308
Ensembl chr11:9,260,239...9,291,162 		JBrowse link
G DELE1 DAP3 binding cell death enhancer 1 involved_in ISO (PMID:37832546) UniProt PMID:37832546 NCBI chr23:44,554,027...44,571,738
Ensembl chr23:44,554,705...44,570,352 		JBrowse link
G DGCR8 DGCR8 microprocessor complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:5,627,924...5,657,773
Ensembl chr19:5,629,684...5,652,191 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:62,926,221...62,985,843
Ensembl chr 9:62,926,674...62,985,842 		JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:17,418,078...17,485,320
Ensembl chr25:17,418,090...17,485,164 		JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:63,294,035...63,308,008
Ensembl chr11:63,294,444...63,304,080 		JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:42,949,059...42,957,323
Ensembl chr16:42,949,570...42,955,312 		JBrowse link
G EME2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:1,682,232...1,685,863
Ensembl chr 5:1,682,249...1,685,260 		JBrowse link
G ENDOG endonuclease G involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:9,322,828...9,326,833
Ensembl chr12:9,322,892...9,326,549 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within
involved_in 		IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G ERCC6L2 ERCC excision repair 6 like 2 involved_in ISO (PMID:37014751) UniProt PMID:37014751 NCBI chr12:107,095,221...107,224,532
Ensembl chr12:107,095,952...107,224,197 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G ETAA1 ETAA1 activator of ATR kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:39,658,974...39,673,093
Ensembl chr14:39,659,873...39,673,259 		JBrowse link
G EXO1 exonuclease 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr25:78,934,337...78,976,346
Ensembl chr25:78,934,459...78,976,219 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:16,717,300...17,001,893
Ensembl chr 2:16,717,291...17,001,703 		JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:104,720,487...104,840,902
Ensembl chr20:104,720,482...104,840,883 		JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr13:39,988,427...40,271,862
Ensembl chr13:40,001,261...40,272,592 		JBrowse link
G FAAP20 FA core complex associated protein 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:129,357,043...129,373,409
Ensembl chr20:129,357,089...129,362,518 		JBrowse link
G FAAP24 FA core complex associated protein 24 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:28,012,664...28,018,612
Ensembl chr 6:28,012,808...28,019,627 		JBrowse link
G FAM111A FAM111 trypsin like peptidase A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,405,991...14,412,170 JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr26:51,720,822...51,759,652
Ensembl chr26:51,725,017...51,759,413 		JBrowse link
G FANCC FA complementation group C involved_in IEA UniProt GO_REF:0000043 NCBI chr12:107,780,087...107,991,828
Ensembl chr12:107,845,135...107,991,237 		JBrowse link
G FANCD2 FA complementation group D2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:46,072,797...46,141,107
Ensembl chr22:46,072,761...46,140,713 		JBrowse link
G FANCF FA complementation group F acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:21915857) MGI
TreeGrafter		 PMID:21915857 GO_REF:0000118 NCBI chr 1:42,377,150...42,381,653
Ensembl chr 1:42,378,883...42,380,007 		JBrowse link
G FANCG FA complementation group G involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:45,537,817...45,544,038
Ensembl chr12:45,538,303...45,543,766 		JBrowse link
G FANCL FA complementation group L involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:48,725,447...48,803,892
Ensembl chr14:48,725,541...48,805,356 		JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:72,696,868...72,752,480
Ensembl chr 5:72,701,136...72,752,989 		JBrowse link
G FBXO45 F-box protein 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:90,632,389...90,647,431
Ensembl chr15:90,629,330...90,647,191 		JBrowse link
G FBXO5 F-box protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:80,453,345...80,467,590
Ensembl chr13:80,453,355...80,466,778 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chr 7:98,894,261...99,105,955
Ensembl chr 7:98,892,504...99,106,084 		JBrowse link
G FEN1 flap structure-specific endonuclease 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:12,057,620...12,062,185 JBrowse link
G FH fumarate hydratase involved_in ISO (PMID:20231875), (PMID:26237645) UniProt PMID:20231875 PMID:26237645 NCBI chr25:78,576,931...78,599,998
Ensembl chr25:78,575,300...78,599,972 		JBrowse link
G FLYWCH1 FLYWCH-type zinc finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:2,654,583...2,689,184
Ensembl chr 5:2,670,081...2,690,582 		JBrowse link
G FMN2 formin 2 involved_in ISO (PMID:23375502)
(PMID:26287480) 		UniProt PMID:23375502 PMID:26287480 NCBI chr25:77,187,572...77,585,773 JBrowse link
G FMN2 formin 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:77,188,304...77,432,384 JBrowse link
G FOXO1 forkhead box O1 involved_in ISO (PMID:21196578) UniProt PMID:21196578 NCBI chr 3:18,916,849...19,027,776
Ensembl chr 3:18,920,651...19,027,707 		JBrowse link
G FOXP1 forkhead box P1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:31,907,941...32,538,294
Ensembl chr22:31,912,460...32,154,502 		JBrowse link
G GADD45A growth arrest and DNA damage inducible alpha involved_in IEA UniProt GO_REF:0000043 NCBI chr20:65,422,668...65,425,845
Ensembl chr20:65,422,451...65,425,840 		JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:40,771,238...40,786,008
Ensembl chr20:40,776,816...40,783,717 		JBrowse link
G GNB1L G protein subunit beta 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:5,889,395...5,959,515
Ensembl chr19:5,890,567...5,959,510 		JBrowse link
G GNL1 G protein nucleolar 1 (putative) involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:41,898,562...41,911,042
Ensembl chr17:41,900,530...41,910,934 		JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:65,650,735...65,682,004 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:118,961,907...118,989,906
Ensembl chr11:118,967,974...118,989,391 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:41,550,167...41,556,538
Ensembl chr17:41,550,287...41,556,054 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 involved_in IEA UniProt GO_REF:0000043 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G H2AFX histone H2AX involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,466,692...110,468,776
Ensembl chr 1:110,467,775...110,468,206 		JBrowse link
G HDGFL2 HDGF like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:4,200,031...4,230,941
Ensembl chr 6:4,200,077...4,230,731 		JBrowse link
G HELB DNA helicase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,972,061...62,008,532
Ensembl chr11:61,972,161...62,012,631 		JBrowse link
G HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:53,760,172...54,007,356
Ensembl chr26:53,792,593...54,007,489 		JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr22:51,759,776...51,785,902
Ensembl chr22:51,759,715...51,785,987 		JBrowse link
G HROB homologous recombination factor with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:62,230,588...62,251,090
Ensembl chr16:62,230,261...62,250,734 		JBrowse link
G HUS1 HUS1 checkpoint clamp component acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:49,661,506...49,814,551
Ensembl chr  X:49,660,790...49,808,572 		JBrowse link
G IER3 immediate early response 3 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:41,712,539...41,713,895
Ensembl chr17:41,712,528...41,714,126 		JBrowse link
G IKBKG inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr  X:128,781,975...128,816,039
Ensembl chr  X:128,787,785...128,806,083 		JBrowse link
G IMMP2L inner mitochondrial membrane peptidase subunit 2 acts_upstream_of_or_within ISO (PMID:21824519) MGI PMID:21824519 NCBI chr21:79,530,113...80,388,851 JBrowse link
G INIP INTS3 and NABP interacting protein involved_in IEA Ensembl
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr12:26,804,425...26,843,898
Ensembl chr12:26,805,787...26,843,243 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INTS3 integrator complex subunit 3 involved_in ISO (PMID:19683501) UniProt PMID:19683501 NCBI chr20:10,037,176...10,085,499 JBrowse link
G INTS3 integrator complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:10,036,453...10,060,847 JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KIN Kin17 DNA and RNA binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:7,801,716...7,836,958
Ensembl chr 9:7,799,492...7,836,719 		JBrowse link
G KNL1 kinetochore scaffold 1 acts_upstream_of_or_within ISO (PMID:31197172) MGI PMID:31197172 NCBI chr26:42,342,741...42,409,466 JBrowse link
G LIG1 DNA ligase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:41,354,701...41,405,417
Ensembl chr 6:41,351,389...41,403,421 		JBrowse link
G LIG3 DNA ligase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LIG4 DNA ligase 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G LOC103220197 chromobox protein homolog 3-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,857,320...45,858,178 JBrowse link
G LOC103232044 ubiquitin carboxyl-terminal hydrolase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:51,539,955...51,545,552
Ensembl chr  X:51,542,091...51,544,223 		JBrowse link
G LOC103236518 histone PARylation factor 1 involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:115,934,687...115,966,404
Ensembl chr 7:115,934,692...115,966,369 		JBrowse link
G LOC103237177 high mobility group protein B1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:92,495,565...92,496,685 JBrowse link
G LOC103241760 ubiquitin-conjugating enzyme E2 E2 acts_upstream_of_or_within ISO (PMID:21628527) MGI PMID:21628527 NCBI chr15:67,885,721...68,263,924 JBrowse link
G LOC103243152 crossover junction endonuclease MUS81 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:53,418,865...53,421,128 JBrowse link
G LOC103246803 mismatch repair endonuclease PMS2 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr28:15,174,359...15,209,962
Ensembl chr28:15,172,100...15,209,852 		JBrowse link
G LOC103247132 serine/threonine-protein kinase TAO1-like involved_in IEA UniProt GO_REF:0000043
G LOC103248265 lysine-specific demethylase 4D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:86,190,515...86,215,061
Ensembl chr 1:86,212,761...86,214,490 		JBrowse link
G LOC119620707 high mobility group protein B1 involved_in IEA UniProt GO_REF:0000043
G LYN LYN proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:51,919,656...52,057,376
Ensembl chr 8:51,919,808...52,057,959 		JBrowse link
G MACROD1 mono-ADP ribosylhydrolase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:10,072,238...10,247,121
Ensembl chr 1:10,072,263...10,250,203 		JBrowse link
G MACROD2 mono-ADP ribosylhydrolase 2 involved_in ISO (PMID:23474712) UniProt PMID:23474712 NCBI chr 2:42,891,656...44,973,129 JBrowse link
G MAEL maelstrom spermatogenic transposon silencer acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:62,011,292...62,057,860
Ensembl chr25:62,011,651...62,044,529 		JBrowse link
G MAPK1 mitogen-activated protein kinase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:4,246,144...4,352,648
Ensembl chr19:4,246,122...4,353,325 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:36,012,164...36,095,542
Ensembl chr17:36,014,454...36,095,138 		JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,932,291...137,938,392
Ensembl chr 8:137,932,364...137,938,626 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:26,536,471...26,545,666
Ensembl chr 5:26,536,532...26,546,461 		JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,632,180...22,681,250
Ensembl chr25:22,629,729...22,681,373 		JBrowse link
G MAPT microtubule associated protein tau involved_in ISO (PMID:21131359) ParkinsonsUK-UCL PMID:21131359 NCBI chr16:59,894,400...60,020,723
Ensembl chr16:59,890,221...59,955,612 		JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:14562041) MGI
UniProt		 PMID:14562041 GO_REF:0000043 NCBI chr22:51,616,840...51,626,232
Ensembl chr22:51,616,803...51,626,224 		JBrowse link
G MCL1 MCL1 apoptosis regulator, BCL2 family member acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G MCM10 minichromosome maintenance 10 replication initiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:13,200,018...13,252,830
Ensembl chr 9:13,204,246...13,253,367 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,976,487...12,985,354
Ensembl chr28:12,977,013...12,985,898 		JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:32,137,983...32,181,187
Ensembl chr 2:32,138,173...32,181,179 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr17:41,735,584...41,754,618
Ensembl chr17:41,739,419...41,755,141 		JBrowse link
G MEN1 menin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,423,885...9,431,123
Ensembl chr 1:9,423,917...9,431,104 		JBrowse link
G METTL3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:21,967,309...21,981,251
Ensembl chr29:21,963,982...21,981,579 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within ISO (PMID:10657972), (PMID:9560238) RGD
MGI		 PMID:9560238 PMID:10657972 PMID:12815001 RGD:2316926 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 Ensembl chr 9:122,326,474...122,377,887 JBrowse link
G MLH1 mutL homolog 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:10657972), (PMID:9560238)
(PMID:14562041), (PMID:16204034) 		MGI
UniProt		 PMID:9560238 PMID:10657972 PMID:14562041 PMID:16204034 GO_REF:0000043 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MLH3 mutL homolog 3 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr24:52,231,468...52,266,179 JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:90,629,148...90,670,113
Ensembl chr 9:90,629,511...90,669,019 		JBrowse link
G MMS22L MMS22 like, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr13:76,611,574...76,750,893
Ensembl chr13:76,611,517...76,750,616 		JBrowse link
G MNDA myeloid cell nuclear differentiation antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:5,079,633...5,124,967
Ensembl chr20:5,079,632...5,095,868 		JBrowse link
G MORC2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:13,817,597...13,859,986
Ensembl chr19:13,815,467...13,858,633 		JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:91,566,051...91,579,084
Ensembl chr  X:91,566,712...91,567,575 		JBrowse link
G MPG N-methylpurine DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:35,073...42,290
Ensembl chr 5:35,114...43,581 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease acts_upstream_of_or_within
involved_in 		IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G MSH2 mutS homolog 2 acts_upstream_of_or_within
involved_in 		IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MSH3 mutS homolog 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:74,811,181...75,032,067
Ensembl chr 4:74,811,198...75,032,005 		JBrowse link
G MSH5 mutS homolog 5 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:40,260,979...40,283,872
Ensembl chr17:40,261,125...40,282,511 		JBrowse link
G MSH6 mutS homolog 6 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr14:59,375,602...59,400,252
Ensembl chr14:59,375,691...59,400,174 		JBrowse link
G MSL2 MSL complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:54,246,090...54,290,809
Ensembl chr15:54,246,127...54,288,555 		JBrowse link
G MTREX Mtr4 exosome RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:51,543,976...51,667,458
Ensembl chr 4:51,544,211...51,667,254 		JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:8,410,571...8,411,793 JBrowse link
G MUTYH mutY DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chr20:87,449,480...87,462,329
Ensembl chr20:87,448,986...87,462,265 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr 8:122,282,989...122,288,392
Ensembl chr 8:122,282,630...122,288,384 		JBrowse link
G NABP1 nucleic acid binding protein 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr10:77,210,624...77,222,340
Ensembl chr10:77,210,702...77,218,289 		JBrowse link
G NABP2 nucleic acid binding protein 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr11:52,176,021...52,183,204
Ensembl chr11:52,177,987...52,182,572 		JBrowse link
G NBN nibrin involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G NEDD4 NEDD4 E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:27,487,652...27,655,742
Ensembl chr26:27,487,796...27,655,992 		JBrowse link
G NEIL1 nei like DNA glycosylase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr26:8,074,706...8,082,437
Ensembl chr26:8,074,310...8,082,123 		JBrowse link
G NEIL2 nei like DNA glycosylase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:7,319,721...7,338,683
Ensembl chr 8:7,319,585...7,338,602 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:123,408,582...123,462,475
Ensembl chr 7:123,409,363...123,462,411 		JBrowse link
G NEK1 NIMA related kinase 1 acts_upstream_of_or_within ISO (PMID:15604234) MGI PMID:15604234 NCBI chr 7:115,621,917...115,819,349
Ensembl chr 7:115,621,916...115,819,291 		JBrowse link
G NEK4 NIMA related kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:14,083,583...14,152,775
Ensembl chr22:14,121,073...14,152,547 		JBrowse link
G NFAT5 nuclear factor of activated T cells 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:57,705,022...57,838,569
Ensembl chr 5:57,709,277...57,838,704 		JBrowse link
G NFATC2 nuclear factor of activated T cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:12,412,935...12,585,275
Ensembl chr 2:12,430,744...12,540,131 		JBrowse link
G NHEJ1 non-homologous end joining factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:104,981,313...105,071,828
Ensembl chr10:104,982,380...105,068,999 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G NKX3-1 NK3 homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,792,069...21,797,258
Ensembl chr 8:21,791,422...21,796,319 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G NPAS2 neuronal PAS domain protein 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:4,529,048...4,705,167
Ensembl chr14:4,612,225...4,705,419 		JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:67,999,010...68,055,164
Ensembl chr24:67,999,268...68,055,093 		JBrowse link
G NSMCE1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:24,930,592...24,973,994
Ensembl chr 5:24,930,347...24,974,054 		JBrowse link
G NSMCE4A NSE4 homolog A, SMC5-SMC6 complex component involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 9:114,697,989...114,716,072
Ensembl chr 9:114,700,224...114,715,392 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:1,936,415...1,946,468
Ensembl chr 5:1,936,524...1,946,434 		JBrowse link
G NUGGC nuclear GTPase, germinal center associated acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:26,129,593...26,190,881 JBrowse link
G NUPR2 nuclear protein 2, transcriptional regulator involved_in ISO (PMID:25899918) UniProt PMID:25899918 NCBI chr21:2,655,437...2,667,287 JBrowse link
G NUPR2 nuclear protein 2, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 Ensembl chr21:2,665,738...2,666,028 JBrowse link
G OARD1 O-acyl-ADP-ribose deacylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:31,084,458...31,099,019
Ensembl chr17:31,084,096...31,089,564 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) MGI PMID:19506022 NCBI chr22:45,757,414...45,763,690 JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 Ensembl chr22:45,758,626...45,763,779 JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in ISO (PMID:20725033) UniProt PMID:20725033 NCBI chr 1:10,247,260...10,271,026 JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:10,248,141...10,259,688 JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 involved_in ISO (PMID:19124460) UniProt PMID:19124460 NCBI chr 5:26,833,333...26,837,655
Ensembl chr 5:26,833,675...26,837,640 		JBrowse link
G PAK1 p21 (RAC1) activated kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:68,530,037...68,679,413
Ensembl chr 1:68,529,571...68,617,092 		JBrowse link
G PARG poly(ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO (PMID:15282315) MGI PMID:15282315 NCBI chr 9:41,867,776...42,006,845
Ensembl chr 9:41,869,061...42,005,789 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:22683995), (PMID:32358582), (PMID:35013556), (PMID:35393539), (PMID:37823600)
(PMID:24550317)
(PMID:24289924), (PMID:27067600), (PMID:27248496) 		RGD
UniProt
MGI		 PMID:15857403 PMID:22683995 PMID:24289924 PMID:24550317 PMID:27067600 More... RGD:1601082 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr29:20,862,787...20,877,752
Ensembl chr29:20,863,380...20,877,644 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr22:13,310,885...13,316,807
Ensembl chr22:13,310,938...13,320,680 		JBrowse link
G PARPBP PARP1 binding protein involved_in IEA UniProt GO_REF:0000043 NCBI chr11:97,367,270...97,437,248
Ensembl chr11:97,370,965...97,437,967 		JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr21:123,095,968...123,156,157
Ensembl chr21:123,095,966...123,155,800 		JBrowse link
G PAXX PAXX non-homologous end joining factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,200,945...1,202,628
Ensembl chr12:1,201,116...1,202,505 		JBrowse link
G PCLAF PCNA clamp associated factor involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr26:19,140,901...19,155,488
Ensembl chr26:19,140,843...19,155,730 		JBrowse link
G PHF13 PHD finger protein 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:125,122,118...125,133,013
Ensembl chr20:125,121,886...125,132,966 		JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:15,294,296...15,432,731
Ensembl chr26:15,297,934...15,432,659 		JBrowse link
G PIDD1 p53-induced death domain protein 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:602,594...609,388
Ensembl chr 1:602,721...607,893 		JBrowse link
G PIERCE1 piercer of microtubule wall 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:2,669,623...2,674,929
Ensembl chr12:2,670,241...2,675,646 		JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase involved_in IEA UniProt GO_REF:0000043 NCBI chr26:18,755,276...18,765,396
Ensembl chr26:18,756,622...18,765,395 		JBrowse link
G PLK3 polo like kinase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:87,989,573...87,995,396
Ensembl chr20:87,989,574...87,994,478 		JBrowse link
G PLK5 polo like kinase 5 (inactive) involved_in ISO (PMID:20100802) UniProt PMID:20100802 NCBI chr 6:1,301,199...1,309,349 JBrowse link
G PLK5 polo like kinase 5 (inactive) involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:1,303,105...1,309,523 JBrowse link
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:12952892) InterPro
MGI		 PMID:12952892 GO_REF:0000002 NCBI chr18:19,861,182...19,865,628
Ensembl chr18:19,862,743...19,865,250 		JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component involved_in IEA UniProt GO_REF:0000043 NCBI chr10:75,305,129...75,392,193
Ensembl chr10:75,311,887...75,392,590 		JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:43,018,763...43,025,506
Ensembl chr 6:43,018,807...43,025,292 		JBrowse link
G POLB DNA polymerase beta involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:26,162,934...26,164,931
Ensembl chr12:26,163,107...26,165,214 		JBrowse link
G POLH DNA polymerase eta involved_in IEA UniProt GO_REF:0000043 NCBI chr17:28,548,454...28,585,232
Ensembl chr17:28,549,623...28,585,206 		JBrowse link
G POLK DNA polymerase kappa involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:69,842,887...69,948,285
Ensembl chr 4:69,872,752...69,948,249 		JBrowse link
G POLL DNA polymerase lambda involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:94,602,738...94,612,393
Ensembl chr 9:94,601,992...94,611,492 		JBrowse link
G POLM DNA polymerase mu involved_in IEA UniProt GO_REF:0000043 NCBI chr21:14,585,912...14,596,127
Ensembl chr21:14,586,164...14,599,248 		JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G PPP4R3A protein phosphatase 4 regulatory subunit 3A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:69,219,313...69,270,938
Ensembl chr24:69,218,583...69,270,929 		JBrowse link
G PPP4R3B protein phosphatase 4 regulatory subunit 3B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:51,285,538...51,356,676
Ensembl chr14:51,285,994...51,355,142 		JBrowse link
G PRAP1 proline rich acidic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:53,195,600...53,201,846 JBrowse link
G PRKCD protein kinase C delta involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:14,561,401...14,592,877
Ensembl chr22:14,565,282...14,592,873 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G PRMT1 protein arginine methyltransferase 1 involved_in ISO (PMID:15741314), (PMID:16294045) UniProt PMID:15741314 PMID:16294045 NCBI chr 6:42,854,873...42,863,113
Ensembl chr 6:42,854,918...42,863,014 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr24:50,394,310...50,476,521
Ensembl chr24:50,405,590...50,472,132 		JBrowse link
G PSME4 proteasome activator subunit 4 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:52,999,960...53,108,624
Ensembl chr14:52,999,960...53,108,885 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:33,800,279...33,807,986
Ensembl chr 4:33,801,230...33,807,457 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr 4:65,456,174...65,501,665
Ensembl chr 4:65,457,763...65,501,157 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25023518)
(PMID:12509447) 		MGI
UniProt
Ensembl		 PMID:12509447 PMID:25023518 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr22:44,878,015...44,960,610
Ensembl chr22:44,875,292...44,960,089 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein acts_upstream_of_or_within
involved_in 		IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G RAD50 RAD50 double strand break repair protein acts_upstream_of_or_within
involved_in 		ISO
IEA 		cyclophosphamide RGD
Ensembl
UniProt		 PMID:11056294 GO_REF:0000043 GO_REF:0000107 RGD:727220 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RAD51C RAD51 paralog C involved_in IEA UniProt GO_REF:0000043 NCBI chr16:34,666,934...34,708,479
Ensembl chr16:34,666,162...34,708,457 		JBrowse link
G RAD51D RAD51 paralog D involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr16:28,603,326...28,623,120
Ensembl chr16:28,604,500...28,622,845 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
G RAD54B RAD54 homolog B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:89,351,203...89,450,047
Ensembl chr 8:89,351,415...89,442,825 		JBrowse link
G RAD54L RAD54 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:86,510,616...86,542,426
Ensembl chr20:86,507,248...86,542,663 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G RASSF1 Ras association domain family member 1 involved_in ISO (PMID:18566590) UniProt PMID:18566590 NCBI chr22:11,716,969...11,728,646
Ensembl chr22:11,716,918...11,725,027 		JBrowse link
G RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:24,217,090...24,253,532
Ensembl chr25:24,217,125...24,256,420 		JBrowse link
G RBBP6 RB binding protein 6, ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,271,209...22,303,922
Ensembl chr 5:22,272,267...22,303,503 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in IEA UniProt GO_REF:0000043 NCBI chr18:57,501,070...57,617,301
Ensembl chr18:57,501,271...57,597,670 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,853,761...54,865,742
Ensembl chr17:54,853,761...54,866,058 		JBrowse link
G RBX1 ring-box 1 involved_in ISO (PMID:22118460) ComplexPortal PMID:22118460 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G REV1 REV1 DNA directed polymerase involved_in IEA UniProt GO_REF:0000043 NCBI chr14:3,128,824...3,218,894
Ensembl chr14:3,129,529...3,218,866 		JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr13:62,400,241...62,586,645
Ensembl chr13:62,399,745...62,586,647 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494 		JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,845,751...36,937,040
Ensembl chr10:36,845,777...36,907,015 		JBrowse link
G RNF138 ring finger protein 138 involved_in IEA UniProt GO_REF:0000043 NCBI chr18:48,604,241...48,643,834
Ensembl chr18:48,603,965...48,642,720 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF169 ring finger protein 169 involved_in ISO (PMID:22492721)
(PMID:22733822) 		UniProt PMID:22492721 PMID:22733822 NCBI chr 1:65,990,538...66,080,163 JBrowse link
G RNF169 ring finger protein 169 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 Ensembl chr 1:66,026,454...66,074,422 JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G RPA1 replication protein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:531,905...567,430
Ensembl chr 2:531,085...566,840 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:57,641,634...57,699,685
Ensembl chr 2:57,639,046...57,699,525 		JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:86,476,101...86,528,146
Ensembl chr 7:86,481,726...86,527,779 		JBrowse link
G SETX senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,773,122...5,872,372
Ensembl chr12:5,773,165...5,875,481 		JBrowse link
G SFPQ splicing factor proline and glutamine rich acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:97,698,953...97,715,762
Ensembl chr20:97,698,411...97,711,294 		JBrowse link
G SFR1 SWI5 dependent homologous recombination repair protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:97,171,948...97,176,232
Ensembl chr 9:97,172,037...97,176,369 		JBrowse link
G SGK1 serum/glucocorticoid regulated kinase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:39,152,289...39,306,190
Ensembl chr13:39,300,567...39,306,183 		JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:25,878,354...25,959,922
Ensembl chr13:25,878,223...25,959,942 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SIRT4 sirtuin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,640,976...115,659,074
Ensembl chr11:115,640,555...115,658,687 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:88,497,787...88,573,966
Ensembl chr 4:88,499,373...88,576,983 		JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:93,919,373...93,983,499
Ensembl chr 9:93,931,456...93,980,297 		JBrowse link
G SLFN11 schlafen family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,819,647...28,842,121
Ensembl chr16:28,817,666...28,842,065 		JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:26,475,234...26,478,844 JBrowse link
G SMARCAD1 SNF2 related chromatin remodeling ATPase with DExD box 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:42,468,551...42,552,493
Ensembl chr 7:42,498,601...42,553,661 		JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:102,253,187...102,319,356
Ensembl chr10:102,255,453...102,319,330 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:49,514,652...49,558,490
Ensembl chr  X:49,515,061...49,558,447 		JBrowse link
G SMC5 structural maintenance of chromosomes 5 involved_in ISO (PMID:11408570), (PMID:25931565) UniProt PMID:11408570 PMID:25931565 NCBI chr12:81,317,689...81,426,196 JBrowse link
G SMC6 structural maintenance of chromosomes 6 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:89,917,621...90,005,604
Ensembl chr14:89,917,518...90,000,088 		JBrowse link
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:17,103,482...17,217,554
Ensembl chr 5:17,116,231...17,217,488 		JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:50,292,780...50,307,828
Ensembl chr11:50,289,154...50,300,492 		JBrowse link
G SPDYA speedy/RINGO cell cycle regulator family member A involved_in ISO (PMID:12839962) UniProt PMID:12839962 NCBI chr14:78,756,606...78,792,788 JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,380,207...43,872,077
Ensembl chr 8:43,380,244...43,872,937 		JBrowse link
G SPINDOC spindlin interactor and repressor of chromatin binding involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:10,422,142...10,437,460
Ensembl chr 1:10,428,432...10,437,287 		JBrowse link
G SPRTN SprT-like N-terminal domain involved_in IEA Ensembl
InterPro
UniProt
TreeGrafter		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr25:68,599,377...68,620,568
Ensembl chr25:68,599,780...68,620,621 		JBrowse link
G SSRP1 structure specific recognition protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:15,907,874...15,918,376
Ensembl chr 1:15,908,495...15,918,596 		JBrowse link
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:973,033...996,857
Ensembl chr 6:974,144...995,136 		JBrowse link
G STK38 serine/threonine kinase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:35,587,246...35,641,555
Ensembl chr17:35,587,256...35,642,279 		JBrowse link
G STXBP4 syntaxin binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:38,210,099...38,406,063
Ensembl chr16:38,292,372...38,388,711 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr29:21,822,520...21,855,552
Ensembl chr29:21,822,393...21,855,923 		JBrowse link
G SUSD6 sushi domain containing 6 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:46,851,952...46,956,717
Ensembl chr24:46,851,958...46,952,585 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:45,820,114...45,834,727
Ensembl chr  X:45,822,453...45,834,917 		JBrowse link
G SWI5 SWI5 homologous recombination repair protein involved_in IEA UniProt GO_REF:0000043 Ensembl chr12:9,838,783...9,852,205 JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:61,167,743...61,269,000
Ensembl chr  X:61,167,589...61,268,839 		JBrowse link
G TAF1L TATA-box binding protein associated factor 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,620,400...47,626,369 JBrowse link
G TANK TRAF family member associated NFKB activator involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:46,527,795...46,632,133
Ensembl chr10:46,556,614...46,632,186 		JBrowse link
G TAOK1 TAO kinase 1 involved_in ISO (PMID:17396146) UniProt PMID:17396146 NCBI chr16:23,145,629...23,291,694 JBrowse link
G TAOK1 TAO kinase 1 involved_in IEA UniProt GO_REF:0000043 Ensembl chr16:23,145,809...23,282,784 JBrowse link
G TAOK2 TAO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,669,687...26,688,418
Ensembl chr 5:26,669,702...26,688,389 		JBrowse link
G TAOK3 TAO kinase 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr11:113,485,871...113,717,213
Ensembl chr11:113,484,330...113,704,271 		JBrowse link
G TDG thymine DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chr11:99,168,051...99,191,168
Ensembl chr11:99,181,608...99,193,591 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in IEA UniProt GO_REF:0000043 Ensembl chr24:67,679,206...67,762,941 JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:47,582,857...47,599,871
Ensembl chr17:47,583,014...47,600,628 		JBrowse link
G TFDP3 transcription factor Dp family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:108,356,281...108,358,019
Ensembl chr  X:108,356,662...108,357,879 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,354,911...4,381,762
Ensembl chr11:4,355,053...4,381,273 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr26:17,194,859...17,214,671
Ensembl chr26:17,198,734...17,214,810 		JBrowse link
G TLK2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:58,662,284...58,800,838
Ensembl chr16:58,660,126...58,797,786 		JBrowse link
G TONSL tonsoku like, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:138,641,514...138,657,429
Ensembl chr 8:138,641,575...138,656,673 		JBrowse link
G TOP2A DNA topoisomerase II alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:65,761,391...65,792,041
Ensembl chr16:65,761,416...65,792,701 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr12:47,702,638...47,714,309
Ensembl chr12:47,702,995...47,714,338 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:15710329), (PMID:17938203), (PMID:30089260)
(PMID:24356969) 		Ensembl
BHF-UCL
UniProt		 PMID:15710329 PMID:17938203 PMID:24356969 PMID:30089260 GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G TP63 tumor protein p63 involved_in ISO (PMID:19451233) UniProt PMID:19451233 NCBI chr15:83,861,489...84,126,675 JBrowse link
G TP73 tumor protein p73 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr20:127,958,002...128,035,792
Ensembl chr20:127,958,809...128,013,691 		JBrowse link
G TRAIP TRAF interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,220,152...11,262,942
Ensembl chr22:11,233,996...11,262,830 		JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:20511593) MGI PMID:20511593 NCBI chr22:9,869,502...9,871,659 JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000118 NCBI chr10:115,789,978...115,946,978
Ensembl chr10:115,789,605...115,945,753 		JBrowse link
G TTC5 tetratricopeptide repeat domain 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:20,809,004...20,825,918
Ensembl chr29:20,808,945...20,826,111 		JBrowse link
G UBA1 ubiquitin like modifier activating enzyme 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:44,377,765...44,402,378
Ensembl chr  X:44,385,940...44,405,051 		JBrowse link
G UBA7 ubiquitin like modifier activating enzyme 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:11,208,744...11,217,834
Ensembl chr22:11,207,417...11,217,734 		JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:37,180,011...37,199,250
Ensembl chr23:37,180,424...37,198,064 		JBrowse link
G UBE2E2 ubiquitin conjugating enzyme E2 E2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr15:68,178,017...68,264,200 JBrowse link
G UBE2T ubiquitin conjugating enzyme E2 T involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:27,069,971...27,084,360
Ensembl chr25:27,070,240...27,081,749 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in ISO (PMID:30612738) UniProt PMID:30612738 NCBI chr20:7,811,275...7,829,782 JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:7,811,220...7,821,203 JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:97,104,325...97,257,317
Ensembl chr 8:97,103,220...97,257,440 		JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:77,357,239...77,387,385
Ensembl chr13:77,357,141...77,387,367 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G UNG uracil DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chr11:104,302,507...104,325,160 JBrowse link
G USP10 ubiquitin specific peptidase 10 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 5:70,105,653...70,186,512
Ensembl chr 5:70,139,470...70,185,884 		JBrowse link
G USP16 ubiquitin specific peptidase 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:63,170,677...63,201,257
Ensembl chr 2:63,170,979...63,201,445 		JBrowse link
G USP28 ubiquitin specific peptidase 28 involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chr 1:105,175,116...105,257,163
Ensembl chr 1:105,175,067...105,257,102 		JBrowse link
G USP47 ubiquitin specific peptidase 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:52,872,514...52,989,111
Ensembl chr 1:52,875,465...52,988,505 		JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998), (PMID:34188037) UniProt PMID:27083998 PMID:34188037
G VAV3 vav guanine nucleotide exchange factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:25,631,104...26,023,854
Ensembl chr20:25,631,171...26,023,849 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G VCPIP1 valosin containing protein interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:62,506,541...62,546,238
Ensembl chr 8:62,510,808...62,546,229 		JBrowse link
G VRK1 VRK serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:74,686,102...74,770,496
Ensembl chr24:74,686,111...74,770,874 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:28,131,774...28,222,501
Ensembl chr 9:28,131,769...28,219,134 		JBrowse link
G WDR48 WD repeat domain 48 acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chr15:319,589...366,265
Ensembl chr15:319,810...366,246 		JBrowse link
G WDR76 WD repeat domain 76 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:39,178,407...39,222,005
Ensembl chr26:39,176,535...39,223,993 		JBrowse link
G WRN WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:69,366,565...69,386,950
Ensembl chr17:69,366,389...69,386,932 		JBrowse link
G XIAP X-linked inhibitor of apoptosis involved_in ISO (PMID:18049476) UniProt PMID:18049476
G XPA XPA, DNA damage recognition and repair factor involved_in IEA UniProt GO_REF:0000043 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within
involved_in 		IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in ISO
IEA 		RGD
UniProt		 PMID:11056294 GO_REF:0000043 RGD:727220 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
G XRCC2 X-ray repair cross complementing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:120,795,188...120,827,737
Ensembl chr21:120,795,212...120,827,706 		JBrowse link
G XRCC3 X-ray repair cross complementing 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr24:81,627,911...81,641,598
Ensembl chr24:81,630,099...81,641,218 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:77,182,569...77,468,786
Ensembl chr 4:77,182,793...77,468,775 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr10:101,952,909...102,051,059
Ensembl chr10:101,953,067...102,049,964 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15979950) MGI
UniProt		 PMID:15979950 GO_REF:0000043 NCBI chr19:24,160,459...24,204,237
Ensembl chr19:24,160,483...24,206,320 		JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:93,479,478...93,605,340
Ensembl chr 1:93,479,135...93,606,808 		JBrowse link
G YY1 YY1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:41,712,721...41,738,853
Ensembl chr24:41,712,114...41,740,654 		JBrowse link
G ZBTB38 zinc finger and BTB domain containing 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:49,160,877...49,203,378
Ensembl chr15:49,160,896...49,164,486 		JBrowse link
G ZBTB4 zinc finger and BTB domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:6,836,070...6,855,523
Ensembl chr16:6,835,954...6,860,133 		JBrowse link
G ZBTB40 zinc finger and BTB domain containing 40 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:110,133,981...110,213,155
Ensembl chr20:110,133,532...110,213,153 		JBrowse link
G ZC3H12A zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:95,388,469...95,398,305
Ensembl chr20:95,388,477...95,397,960 		JBrowse link
G ZDHHC16 zDHHC palmitoyltransferase 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:90,615,962...90,628,559
Ensembl chr 9:90,622,613...90,628,080 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:92,605,495...92,648,110
Ensembl chr20:92,605,309...92,648,114 		JBrowse link
G ZNF385A zinc finger protein 385A involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,483,974...50,507,178
Ensembl chr11:50,483,666...50,507,233 		JBrowse link
G ZNF432 zinc finger protein 432 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:44,849,946...44,864,224
Ensembl chr 6:44,847,333...44,858,408 		JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:19,428,139...19,739,886
Ensembl chr10:19,427,652...19,572,384 		JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:20,978,878...20,981,393 JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:51,077,496...51,084,787
Ensembl chr  X:51,077,025...51,084,783 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,926,221...62,985,843
Ensembl chr 9:62,926,674...62,985,842 		JBrowse link
G FEN1 flap structure-specific endonuclease 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:12,057,620...12,062,185 JBrowse link
G HMGA1 high mobility group AT-hook 1 involved_in ISO (PMID:19465398) UniProt PMID:19465398 NCBI chr17:37,848,110...37,857,835
Ensembl chr17:37,849,412...37,853,880 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:19465398) UniProt PMID:19465398 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:17803946) UniProt PMID:17803946 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:49,661,506...49,814,551
Ensembl chr  X:49,660,790...49,808,572 		JBrowse link
G LIG1 DNA ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,354,701...41,405,417
Ensembl chr 6:41,351,389...41,403,421 		JBrowse link
G LIG3 DNA ligase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LIG4 DNA ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G MPG N-methylpurine DNA glycosylase involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:35,073...42,290
Ensembl chr 5:35,114...43,581 		JBrowse link
G MUTYH mutY DNA glycosylase involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr20:87,449,480...87,462,329
Ensembl chr20:87,448,986...87,462,265 		JBrowse link
G NEIL1 nei like DNA glycosylase 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr26:8,074,706...8,082,437
Ensembl chr26:8,074,310...8,082,123 		JBrowse link
G NEIL2 nei like DNA glycosylase 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:7,319,721...7,338,683
Ensembl chr 8:7,319,585...7,338,602 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:123,408,582...123,462,475
Ensembl chr 7:123,409,363...123,462,411 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:1,936,415...1,946,468
Ensembl chr 5:1,936,524...1,946,434 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:9207108)
(PMID:10570187) 		RGD
MGI		 PMID:9207108 PMID:9801319 PMID:10570187 RGD:729091 NCBI chr22:45,757,414...45,763,690 JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 Ensembl chr22:45,758,626...45,763,779 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:11948190) MGI PMID:11948190 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr29:20,862,787...20,877,752
Ensembl chr29:20,863,380...20,877,644 		JBrowse link
G POLB DNA polymerase beta involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLG DNA polymerase gamma, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:7,864,319...7,881,577
Ensembl chr29:7,863,277...7,882,068 		JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G RPA1 replication protein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:9765279) UniProt PMID:9765279 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPA3 replication protein A3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:50,570,027...50,574,270
Ensembl chr21:50,570,751...50,574,216 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:16439206) CACAO PMID:16439206 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr11:50,292,780...50,307,828
Ensembl chr11:50,289,154...50,300,492 		JBrowse link
G TDG thymine DNA glycosylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:99,168,051...99,191,168
Ensembl chr11:99,181,608...99,193,591 		JBrowse link
G UNG uracil DNA glycosylase involved_in ISO
IEA 		RGD
UniProt
InterPro		 PMID:12167490 GO_REF:0000002 GO_REF:0000104 RGD:634481 NCBI chr11:104,302,507...104,325,160 JBrowse link
G USP47 ubiquitin specific peptidase 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:52,872,514...52,989,111
Ensembl chr 1:52,875,465...52,988,505 		JBrowse link
G WRN WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G XNDC1N XRCC1 N-terminal domain containing 1, N-terminal like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:63,096,260...63,132,158 JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in ISO
IEA 		RGD
Ensembl
TreeGrafter
InterPro		 PMID:17412650 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2302580 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:77,182,569...77,468,786
Ensembl chr 4:77,182,793...77,468,775 		JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:9927729) UniProt PMID:9927729 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:1,936,415...1,946,468
Ensembl chr 5:1,936,524...1,946,434 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr22:45,758,626...45,763,779 JBrowse link
G TDG thymine DNA glycosylase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:99,168,051...99,191,168
Ensembl chr11:99,181,608...99,193,591 		JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UNG uracil DNA glycosylase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:104,302,507...104,325,160 JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103235079 transcription factor Spi-B involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:43,446,466...43,490,377
Ensembl chr 6:43,460,747...43,480,112
Ensembl chr 6:43,460,747...43,480,112 		JBrowse link
G PCNA proliferating cell nuclear antigen acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:32,936,600...32,953,635
Ensembl chr 2:32,948,196...32,953,991 		JBrowse link
G POLB DNA polymerase beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:127,966,879...128,030,442
Ensembl chr11:127,965,896...128,030,292 		JBrowse link
G POLG DNA polymerase gamma, catalytic subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr29:7,864,319...7,881,577
Ensembl chr29:7,863,277...7,882,068 		JBrowse link
G POLL DNA polymerase lambda involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:94,602,738...94,612,393
Ensembl chr 9:94,601,992...94,611,492 		JBrowse link
broken chromosome clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CIP2A cellular inhibitor of PP2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:72,192,788...72,234,020
Ensembl chr22:72,193,060...72,231,673 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
DNA alkylation repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:104,292,528...104,298,500
Ensembl chr11:104,288,454...104,298,196 		JBrowse link
G ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:21,463,744...21,505,940
Ensembl chr 1:21,462,516...21,505,934 		JBrowse link
G ASCC1 activating signal cointegrator 1 complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:59,095,335...59,205,646
Ensembl chr 9:59,097,501...59,204,874 		JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:73,044,869...73,411,481
Ensembl chr13:73,044,986...73,412,752 		JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 5:39,487,304...39,900,238
Ensembl chr 5:39,487,418...39,725,747 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within ISO (PMID:1554415) RGD
MGI		 PMID:1554415 PMID:15025514 RGD:2316914 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 9:122,326,474...122,377,887 JBrowse link
G OTUD4 OTU deubiquitinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:91,709,184...91,756,437
Ensembl chr 7:91,708,767...91,756,793 		JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,470,137...8,540,736
Ensembl chr 5:8,469,230...8,540,770 		JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:38,255,414...38,402,855
Ensembl chr  X:38,256,008...38,403,323
Ensembl chr  Y:38,256,008...38,403,323 		JBrowse link
DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G ATR ATR serine/threonine kinase acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:12937170) MGI
TreeGrafter
Ensembl		 PMID:12937170 GO_REF:0000107 GO_REF:0000118 NCBI chr15:48,048,785...48,173,120
Ensembl chr15:48,048,882...48,173,137 		JBrowse link
G ATRIP ATR interacting protein involved_in IEA InterPro GO_REF:0000002 NCBI chr22:9,849,439...9,869,654
Ensembl chr22:9,849,570...9,869,553 		JBrowse link
G CDC5L cell division cycle 5 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:27,727,185...27,785,233
Ensembl chr17:27,722,819...27,785,268 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:10859164)
(PMID:12529385) 		InterPro
MGI		 PMID:10859164 PMID:12529385 GO_REF:0000002 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G CHEK2 checkpoint kinase 2 ISO RGD PMID:10435585 RGD:633752 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G CLOCK clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:13,015,198...13,134,741
Ensembl chr 7:13,051,454...13,127,240 		JBrowse link
G CLSPN claspin involved_in ISO (PMID:16963448) UniProt PMID:16963448 NCBI chr20:97,096,529...97,132,305 JBrowse link
G DONSON DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,598,341...58,627,279
Ensembl chr 2:58,598,967...58,609,316 		JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:1,962,077...2,030,732
Ensembl chr 6:1,962,279...2,026,455 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:58,287,331...58,298,519
Ensembl chr22:58,290,764...58,298,376 		JBrowse link
G E2F1 E2F transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:37,968,541...37,980,461
Ensembl chr 2:37,968,556...37,980,326 		JBrowse link
G EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr26:42,966,095...43,072,083
Ensembl chr26:42,962,447...43,072,001 		JBrowse link
G GNB1L G protein subunit beta 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:5,889,395...5,959,515
Ensembl chr19:5,890,567...5,959,510 		JBrowse link
G H2AFX histone H2AX NOT|acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:11934988) MGI
Ensembl		 PMID:11934988 GO_REF:0000107 NCBI chr 1:110,466,692...110,468,776
Ensembl chr 1:110,467,775...110,468,206 		JBrowse link
G HINFP histone H4 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,495,188...110,509,855
Ensembl chr 1:110,500,566...110,510,222 		JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G INTS7 integrator complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:17,485,353...17,573,178
Ensembl chr25:17,485,316...17,574,144 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G LYN LYN proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:51,919,656...52,057,376
Ensembl chr 8:51,919,808...52,057,959 		JBrowse link
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO (PMID:11836244) UniProt PMID:11836244 NCBI chr10:58,573,303...58,764,759 JBrowse link
G MAPK14 mitogen-activated protein kinase 14 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:36,012,164...36,095,542
Ensembl chr17:36,014,454...36,095,138 		JBrowse link
G NBN nibrin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:58,297,526...58,336,243
Ensembl chr22:58,298,046...58,337,124 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:107,658,495...107,754,457
Ensembl chr11:107,658,453...107,752,637 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:33,800,279...33,807,986
Ensembl chr 4:33,801,230...33,807,457 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:65,456,174...65,501,665
Ensembl chr 4:65,457,763...65,501,157 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B involved_in IEA InterPro GO_REF:0000002 NCBI chr11:105,738,247...105,772,539
Ensembl chr11:105,738,867...105,772,002 		JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:2,941,055...2,955,421
Ensembl chr11:2,941,001...2,955,438 		JBrowse link
G RPA4 replication protein A4 involved_in ISO (PMID:19942684) UniProt PMID:19942684 NCBI chr  X:85,323,910...85,325,997 JBrowse link
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:17,103,482...17,217,554
Ensembl chr 5:17,116,231...17,217,488 		JBrowse link
G STK38 serine/threonine kinase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:35,587,246...35,641,555
Ensembl chr17:35,587,256...35,642,279 		JBrowse link
G TIPIN TIMELESS interacting protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:17,194,859...17,214,671
Ensembl chr26:17,198,734...17,214,810 		JBrowse link
G TIPRL TOR signaling pathway regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:60,842,563...60,869,380
Ensembl chr25:60,841,783...60,869,258 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:18045533) MGI PMID:18045533 NCBI chr22:9,869,502...9,871,659 JBrowse link
G UFL1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:77,357,239...77,387,385
Ensembl chr13:77,357,141...77,387,367 		JBrowse link
G USP28 ubiquitin specific peptidase 28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:105,175,116...105,257,163
Ensembl chr 1:105,175,067...105,257,102 		JBrowse link
DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACER2 alkaline ceramidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,286,802...60,323,359
Ensembl chr12:60,283,174...60,321,817 		JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:66,449,830...66,737,220
Ensembl chr  X:66,448,449...66,737,164 		JBrowse link
G BATF basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:52,761,569...52,785,999
Ensembl chr24:52,761,651...52,785,978 		JBrowse link
G BCL3 BCL3 transcription coactivator involved_in ISO (PMID:16384933) UniProt PMID:16384933 NCBI chr 6:38,228,137...38,243,767 JBrowse link
G BCL3 BCL3 transcription coactivator involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:38,229,459...38,244,150 JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G CASP2 caspase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:112,172,614...112,189,574
Ensembl chr21:112,172,733...112,188,744 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:35,445,668...35,454,334
Ensembl chr17:35,445,223...35,454,342 		JBrowse link
G CHEK2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:10710310) MGI PMID:10710310 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G CRADD CASP2 and RIPK1 domain containing adaptor with death domain involved_in ISO (PMID:21726810) UniProt PMID:21726810 NCBI chr11:89,066,952...89,246,177 JBrowse link
G E2F7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:72,598,220...72,642,366
Ensembl chr11:72,599,353...72,641,420 		JBrowse link
G FOXM1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,920,903...2,941,011
Ensembl chr11:2,920,663...2,940,823 		JBrowse link
G FOXO3 forkhead box O3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:65,175,764...65,303,107
Ensembl chr13:65,195,376...65,301,725 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:108,310,782...108,533,274
Ensembl chr21:108,322,096...108,533,226 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G MDM2 MDM2 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,434,203...64,465,490
Ensembl chr11:64,434,261...64,469,890 		JBrowse link
G MDM4 MDM4 regulator of p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:24,797,238...24,843,034
Ensembl chr25:24,797,278...24,833,485 		JBrowse link
G MIF macrophage migration inhibitory factor acts_upstream_of_or_within ISO (PMID:12878730) MGI PMID:12878730 NCBI chr19:7,000,837...7,001,700
Ensembl chr19:7,000,793...7,001,757 		JBrowse link
G MUC1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr20:8,641,701...8,646,739
Ensembl chr20:8,642,842...8,646,962 		JBrowse link
G MYO6 myosin VI involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:527,361...620,418
Ensembl chr13:457,495...618,858 		JBrowse link
G NDRG1 N-myc downstream regulated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:127,668,012...127,727,918
Ensembl chr 8:127,667,981...127,719,011 		JBrowse link
G NDUFS6 NADH:ubiquinone oxidoreductase subunit S6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:1,643,810...1,658,651
Ensembl chr 4:1,643,822...1,658,858 		JBrowse link
G PAXIP1 PAX interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:123,095,968...123,156,157
Ensembl chr21:123,095,966...123,155,800 		JBrowse link
G PCBP4 poly(rC) binding protein 4 involved_in ISO (PMID:10891498) UniProt PMID:10891498 NCBI chr22:13,326,069...13,336,474
Ensembl chr22:13,325,551...13,329,903 		JBrowse link
G PIDD1 p53-induced death domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:602,594...609,388
Ensembl chr 1:602,721...607,893 		JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:15626733) UniProt PMID:15626733 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931 		JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:31,833,145...31,900,962
Ensembl chr16:31,833,160...31,900,963 		JBrowse link
G PPP2R5C protein phosphatase 2 regulatory subunit B'gamma involved_in ISO (PMID:17245430) UniProt PMID:17245430 NCBI chr24:79,703,316...79,875,379
Ensembl chr24:79,703,312...79,875,389 		JBrowse link
G PRAP1 proline rich acidic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:53,195,600...53,201,846 JBrowse link
G RBM38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chr 2:6,709,975...6,727,534
Ensembl chr 2:6,711,458...6,727,353 		JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,733,652...7,740,384
Ensembl chr16:7,732,921...7,740,325 		JBrowse link
G RPS27L ribosomal protein S27 like involved_in ISO (PMID:18056458) UniProt PMID:18056458 NCBI chr26:20,385,684...20,389,351 JBrowse link
G RPS6KA6 ribosomal protein S6 kinase A6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:72,942,352...73,081,174
Ensembl chr  X:72,942,648...73,080,887 		JBrowse link
G SESN2 sestrin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:104,521,131...104,544,161
Ensembl chr20:104,521,132...104,544,001 		JBrowse link
G SP100 SP100 nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:116,454,261...116,587,093
Ensembl chr10:116,459,050...116,590,215 		JBrowse link
G TFAP4 transcription factor AP-4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,931,288...3,960,039
Ensembl chr 5:3,932,149...3,954,486 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TRIAP1 TP53 regulated inhibitor of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,798,472...115,800,906
Ensembl chr11:115,798,862...115,800,840 		JBrowse link
G USP10 ubiquitin specific peptidase 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:70,105,653...70,186,512
Ensembl chr 5:70,139,470...70,185,884 		JBrowse link
DNA damage response, signal transduction resulting in transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,926,221...62,985,843
Ensembl chr 9:62,926,674...62,985,842 		JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:46,431,309...46,480,500
Ensembl chr24:46,444,282...46,482,845 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G SETMAR SET domain and mariner transposase fusion gene involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:40,389,390...40,403,917
Ensembl chr22:40,389,485...40,403,898 		JBrowse link
G SMARCAD1 SNF2 related chromatin remodeling ATPase with DExD box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:42,468,551...42,552,493
Ensembl chr 7:42,498,601...42,553,661 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N acts_upstream_of ISO (PMID:17349954) HGNC-UCL PMID:17349954 NCBI chr11:88,810,505...88,842,895 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 involved_in ISO (PMID:17349954) HGNC-UCL PMID:17349954 NCBI chr 8:44,167,214...44,218,074 JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELQ helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,799,072...31,846,942
Ensembl chr 7:31,797,747...31,846,760 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:57,501,070...57,617,301
Ensembl chr18:57,501,271...57,597,670 		JBrowse link
G RNF138 ring finger protein 138 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:48,604,241...48,643,834
Ensembl chr18:48,603,965...48,642,720 		JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in ISO (PMID:19595721) UniProt PMID:19595721 NCBI chr 5:26,475,234...26,478,844 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595721) UniProt PMID:19595721 NCBI chr 5:3,281,468...3,308,296 JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMC1 DNA meiotic recombinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein involved_in IEA InterPro GO_REF:0000002 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:31,852,411...31,875,968
Ensembl chr 7:31,853,490...31,875,189 		JBrowse link
G ADPRS ADP-ribosylserine hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:96,762,823...96,768,336
Ensembl chr20:96,762,360...96,768,057 		JBrowse link
G ALKBH1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:19959401) UniProt PMID:19959401 NCBI chr24:54,932,455...54,967,394 JBrowse link
G ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro GO_REF:0000002 NCBI chr11:104,292,528...104,298,500
Ensembl chr11:104,288,454...104,298,196 		JBrowse link
G ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:21,463,744...21,505,940
Ensembl chr 1:21,462,516...21,505,934 		JBrowse link
G ANKLE1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (PMID:27010503) UniProt PMID:27010503 NCBI chr 6:15,788,861...15,794,825
Ensembl chr 6:15,789,355...15,795,025 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr29:20,978,878...20,981,393 JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr  X:51,077,496...51,084,787
Ensembl chr  X:51,077,025...51,084,783 		JBrowse link
G APLF aprataxin and PNKP like factor involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G APTX aprataxin involved_in IEA UniProt GO_REF:0000043 NCBI chr12:47,239,094...47,346,528
Ensembl chr12:47,258,798...47,287,102 		JBrowse link
G ASF1A anti-silencing function 1A histone chaperone acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:54,972,514...54,988,436
Ensembl chr13:54,969,299...54,988,558 		JBrowse link
G ATM ATM serine/threonine kinase involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G ATR ATR serine/threonine kinase involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15364958) UniProt
TreeGrafter
MGI		 PMID:15364958 GO_REF:0000043 GO_REF:0000118 NCBI chr15:48,048,785...48,173,120
Ensembl chr15:48,048,882...48,173,137 		JBrowse link
G ATRIP ATR interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:9,849,439...9,869,654
Ensembl chr22:9,849,570...9,869,553 		JBrowse link
G ATRX ATRX chromatin remodeler involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:66,449,830...66,737,220
Ensembl chr  X:66,448,449...66,737,164 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr14:79,277,238...79,732,996
Ensembl chr14:79,289,043...79,732,891 		JBrowse link
G BACH1 BTB domain and CNC homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:62,674,834...63,028,825
Ensembl chr 2:62,877,986...62,925,465 		JBrowse link
G BLM BLM RecQ like helicase involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15364958) InterPro
TreeGrafter
MGI
UniProt		 PMID:15364958 GO_REF:0000002 GO_REF:0000117 GO_REF:0000118 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:129,358,759...129,406,293
Ensembl chr  X:129,358,862...129,403,352 		JBrowse link
G CDK2 cyclin dependent kinase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:51,905,085...51,910,209
Ensembl chr11:51,905,115...51,909,907 		JBrowse link
G CENPS centromere protein S involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr20:121,333,554...121,343,893
Ensembl chr20:121,340,995...121,353,902
Ensembl chr20:121,340,995...121,353,902 		JBrowse link
G CENPX centromere protein X involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr16:73,905,670...73,910,622
Ensembl chr16:73,905,600...73,910,322 		JBrowse link
G CGAS cyclic GMP-AMP synthase acts_upstream_of_or_within ISO (PMID:22736760) UniProt PMID:22736760 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:4,134,405...4,174,281
Ensembl chr 6:4,137,738...4,174,988 		JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like involved_in IEA InterPro GO_REF:0000002
G CHEK1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:19716789)
(PMID:15364958) 		UniProt
MGI		 PMID:15364958 PMID:19716789 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G CHRNA4 cholinergic receptor nicotinic alpha 4 subunit involved_in ISO (PMID:16332175) UniProt PMID:16332175 NCBI chr 2:851,790...862,685 JBrowse link
G DCLRE1A DNA cross-link repair 1A involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:106,713,857...106,735,268
Ensembl chr 9:106,713,895...106,731,999 		JBrowse link
G DCLRE1B DNA cross-link repair 1B involved_in IEA UniProt GO_REF:0000043 NCBI chr20:19,750,106...19,757,190
Ensembl chr20:19,748,898...19,756,901 		JBrowse link
G DCLRE1C DNA cross-link repair 1C involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:14,929,221...14,974,791
Ensembl chr 9:14,929,317...14,965,443 		JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chr 1:18,071,011...18,096,660
Ensembl chr 1:18,071,383...18,096,595 		JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:88,570,281...88,577,747
Ensembl chr20:88,570,341...88,577,306 		JBrowse link
G DMC1 DNA meiotic recombinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:62,926,221...62,985,843
Ensembl chr 9:62,926,674...62,985,842 		JBrowse link
G DNTT DNA nucleotidylexotransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:89,459,347...89,494,985
Ensembl chr 9:89,458,820...89,497,013 		JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:1,962,077...2,030,732
Ensembl chr 6:1,962,279...2,026,455 		JBrowse link
G EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 involved_in IEA InterPro GO_REF:0000002
G EME1 essential meiotic structure-specific endonuclease 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr16:42,949,059...42,957,323
Ensembl chr16:42,949,570...42,955,312 		JBrowse link
G EME2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 5:1,682,232...1,685,863
Ensembl chr 5:1,682,249...1,685,260 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15082767) UniProt
MGI		 PMID:15082767 GO_REF:0000043 GO_REF:0000117 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G EXO1 exonuclease 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr25:78,934,337...78,976,346
Ensembl chr25:78,934,459...78,976,219 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:16,717,300...17,001,893
Ensembl chr 2:16,717,291...17,001,703 		JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:104,720,487...104,840,902
Ensembl chr20:104,720,482...104,840,883 		JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr13:39,988,427...40,271,862
Ensembl chr13:40,001,261...40,272,592 		JBrowse link
G FAAP24 FA core complex associated protein 24 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:28,012,664...28,018,612
Ensembl chr 6:28,012,808...28,019,627 		JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 involved_in IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr26:51,720,822...51,759,652
Ensembl chr26:51,725,017...51,759,413 		JBrowse link
G FANCC FA complementation group C involved_in IEA UniProt GO_REF:0000043 NCBI chr12:107,780,087...107,991,828
Ensembl chr12:107,845,135...107,991,237 		JBrowse link
G FANCD2 FA complementation group D2 involved_in IEA InterPro GO_REF:0000002 NCBI chr22:46,072,797...46,141,107
Ensembl chr22:46,072,761...46,140,713 		JBrowse link
G FANCI FA complementation group I involved_in IEA InterPro GO_REF:0000002 NCBI chr29:7,788,983...7,864,505
Ensembl chr29:7,790,458...7,855,552 		JBrowse link
G FANCL FA complementation group L involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:48,725,447...48,803,892
Ensembl chr14:48,725,541...48,805,356 		JBrowse link
G FANCM FA complementation group M involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000117 NCBI chr24:22,255,750...22,327,191
Ensembl chr24:22,256,236...22,329,609 		JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G FEN1 flap structure-specific endonuclease 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:12861020) UniProt
MGI		 PMID:12861020 GO_REF:0000043 NCBI chr 1:12,057,620...12,062,185 JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,635,383...122,674,298
Ensembl chr  X:122,635,439...122,674,355 		JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 4:65,650,735...65,682,004 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:118,961,907...118,989,906
Ensembl chr11:118,967,974...118,989,391 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:41,550,167...41,556,538
Ensembl chr17:41,550,287...41,556,054 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 involved_in IEA UniProt GO_REF:0000043 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G H2AFX histone H2AX acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:110,466,692...110,468,776
Ensembl chr 1:110,467,775...110,468,206 		JBrowse link
G H2AFY core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,113,212...38,178,227
Ensembl chr23:38,113,195...38,168,382 		JBrowse link
G HDAC9 histone deacetylase 9 acts_upstream_of_or_within ISO (PMID:21746928) MGI PMID:21746928 NCBI chr21:39,159,270...39,859,403 JBrowse link
G HDGFL2 HDGF like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:4,200,031...4,230,941
Ensembl chr 6:4,200,077...4,230,731 		JBrowse link
G HINFP histone H4 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,495,188...110,509,855
Ensembl chr 1:110,500,566...110,510,222 		JBrowse link
G HLTF helicase like transcription factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:41,621,349...41,676,185
Ensembl chr15:41,621,456...41,674,120 		JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:49,661,506...49,814,551
Ensembl chr  X:49,660,790...49,808,572 		JBrowse link
G INIP INTS3 and NABP interacting protein involved_in IEA InterPro
Ensembl
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr12:26,804,425...26,843,898
Ensembl chr12:26,805,787...26,843,243 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INTS3 integrator complex subunit 3 involved_in ISO (PMID:19605351), (PMID:19683501) UniProt PMID:19605351 PMID:19683501 NCBI chr20:10,037,176...10,085,499 JBrowse link
G INTS3 integrator complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:10,036,453...10,060,847 JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KIF22 kinesin family member 22 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:26,848,443...26,863,666
Ensembl chr 5:26,848,242...26,857,084 		JBrowse link
G KMT5B lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,308,565...6,367,272
Ensembl chr 1:6,308,742...6,367,393 		JBrowse link
G KMT5C lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,942,100...47,950,364
Ensembl chr 6:47,944,197...47,949,693 		JBrowse link
G LIG1 DNA ligase 1 NOT|acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:11896201)
(PMID:21390131) 		RGD
MGI
UniProt
InterPro		 PMID:1730240 PMID:11896201 PMID:21390131 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 RGD:724410 NCBI chr 6:41,354,701...41,405,417
Ensembl chr 6:41,351,389...41,403,421 		JBrowse link
G LIG3 DNA ligase 3 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LIG4 DNA ligase 4 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G LOC103221745 heat shock 70 kDa protein 1A acts_upstream_of_or_within ISO (PMID:14701760) MGI PMID:14701760 NCBI chr17:40,203,647...40,206,028
Ensembl chr17:40,203,936...40,205,858 		JBrowse link
G LOC103226223 endonuclease/exonuclease/phosphatase family domain-containing protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr21:22,188,341...22,332,123
Ensembl chr21:22,186,445...22,332,072 		JBrowse link
G LOC103235079 transcription factor Spi-B involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:43,446,466...43,490,377
Ensembl chr 6:43,460,747...43,480,112
Ensembl chr 6:43,460,747...43,480,112 		JBrowse link
G LOC103236518 histone PARylation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:115,934,687...115,966,404
Ensembl chr 7:115,934,692...115,966,369 		JBrowse link
G LOC103237177 high mobility group protein B1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:92,495,565...92,496,685 JBrowse link
G LOC103239431 E1A-binding protein p400 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:127,335,371...127,461,564
Ensembl chr11:127,335,492...127,461,796 		JBrowse link
G LOC103239433 putative EP400-like protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:127,465,216...127,506,042 JBrowse link
G LOC103243152 crossover junction endonuclease MUS81 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr16:53,418,865...53,421,128 JBrowse link
G LOC103243694 endonuclease V involved_in IEA InterPro GO_REF:0000002 NCBI chr16:72,389,005...72,413,206
Ensembl chr16:72,389,122...72,403,976 		JBrowse link
G LOC103246803 mismatch repair endonuclease PMS2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:15,174,359...15,209,962
Ensembl chr28:15,172,100...15,209,852 		JBrowse link
G LOC103247132 serine/threonine-protein kinase TAO1-like involved_in IEA UniProt GO_REF:0000043
G LOC119620707 high mobility group protein B1 involved_in IEA UniProt GO_REF:0000043
G MBD4 methyl-CpG binding domain 4, DNA glycosylase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr22:51,616,840...51,626,232
Ensembl chr22:51,616,803...51,626,224 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA UniProt GO_REF:0000043 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:41,735,584...41,754,618
Ensembl chr17:41,739,419...41,755,141 		JBrowse link
G MGME1 mitochondrial genome maintenance exonuclease 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 2:47,028,568...47,050,950
Ensembl chr 2:47,029,329...47,050,948 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within ISO (PMID:13679151) MGI PMID:13679151 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 Ensembl chr 9:122,326,474...122,377,887 JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15480418)
(PMID:13679151) 		UniProt
MGI		 PMID:13679151 PMID:15480418 GO_REF:0000043 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 9:90,629,148...90,670,113
Ensembl chr 9:90,629,511...90,669,019 		JBrowse link
G MMS22L MMS22 like, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr13:76,611,574...76,750,893
Ensembl chr13:76,611,517...76,750,616 		JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:37,922,347...38,161,467
Ensembl chr24:37,922,353...38,162,226 		JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:91,566,051...91,579,084
Ensembl chr  X:91,566,712...91,567,575 		JBrowse link
G MPG N-methylpurine DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:35,073...42,290
Ensembl chr 5:35,114...43,581 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G MSH2 mutS homolog 2 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MSH3 mutS homolog 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 4:74,811,181...75,032,067
Ensembl chr 4:74,811,198...75,032,005 		JBrowse link
G MSH5 mutS homolog 5 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:40,260,979...40,283,872
Ensembl chr17:40,261,125...40,282,511 		JBrowse link
G MSH6 mutS homolog 6 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:59,375,602...59,400,252
Ensembl chr14:59,375,691...59,400,174 		JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 1:8,410,571...8,411,793 JBrowse link
G MUTYH mutY DNA glycosylase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr20:87,449,480...87,462,329
Ensembl chr20:87,448,986...87,462,265 		JBrowse link
G NABP1 nucleic acid binding protein 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr10:77,210,624...77,222,340
Ensembl chr10:77,210,702...77,218,289 		JBrowse link
G NABP2 nucleic acid binding protein 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr11:52,176,021...52,183,204
Ensembl chr11:52,177,987...52,182,572 		JBrowse link
G NBN nibrin involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G NEIL1 nei like DNA glycosylase 1 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr26:8,074,706...8,082,437
Ensembl chr26:8,074,310...8,082,123 		JBrowse link
G NEIL2 nei like DNA glycosylase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:7,319,721...7,338,683
Ensembl chr 8:7,319,585...7,338,602 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 7:123,408,582...123,462,475
Ensembl chr 7:123,409,363...123,462,411 		JBrowse link
G NHEJ1 non-homologous end joining factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:104,981,313...105,071,828
Ensembl chr10:104,982,380...105,068,999 		JBrowse link
G NME3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:1,679,361...1,680,796
Ensembl chr 5:1,679,549...1,680,547 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G NPM1 nucleophosmin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G NSMCE1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 5:24,930,592...24,973,994
Ensembl chr 5:24,930,347...24,974,054 		JBrowse link
G NSMCE3 NSE3 homolog, SMC5-SMC6 complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:52,187,217...52,189,718
Ensembl chr26:52,187,898...52,188,812 		JBrowse link
G NSMCE4A NSE4 homolog A, SMC5-SMC6 complex component involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chr 9:114,697,989...114,716,072
Ensembl chr 9:114,700,224...114,715,392 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 NCBI chr 5:1,936,415...1,946,468
Ensembl chr 5:1,936,524...1,946,434 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:12447686), (PMID:17213818)
(PMID:12874039)
(PMID:11532868), (PMID:12447686), (PMID:17213818) 		MGI PMID:11532868 PMID:12447686 PMID:12874039 PMID:17213818 NCBI chr22:45,757,414...45,763,690 JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in
acts_upstream_of_or_within 		IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 Ensembl chr22:45,758,626...45,763,779 JBrowse link
G PARK7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:123,776,084...123,808,031
Ensembl chr20:123,776,297...123,798,434 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:30104678), (PMID:30675909), (PMID:31796734), (PMID:32028527), (PMID:33186521), (PMID:34874266)
(PMID:22736760) 		UniProt PMID:22736760 PMID:30104678 PMID:30675909 PMID:31796734 PMID:32028527 More... NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr29:20,862,787...20,877,752
Ensembl chr29:20,863,380...20,877,644 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:13,310,885...13,316,807
Ensembl chr22:13,310,938...13,320,680 		JBrowse link
G PARPBP PARP1 binding protein involved_in IEA UniProt GO_REF:0000043 NCBI chr11:97,367,270...97,437,248
Ensembl chr11:97,370,965...97,437,967 		JBrowse link
G PCLAF PCNA clamp associated factor involved_in IEA UniProt GO_REF:0000043 NCBI chr26:19,140,901...19,155,488
Ensembl chr26:19,140,843...19,155,730 		JBrowse link
G PDS5A PDS5 cohesin associated factor A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:10,333,784...10,502,113
Ensembl chr27:10,388,334...10,487,029 		JBrowse link
G PDS5B PDS5 cohesin associated factor B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:11,330,817...11,511,411
Ensembl chr 3:11,389,199...11,508,441 		JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr26:18,755,276...18,765,396
Ensembl chr26:18,756,622...18,765,395 		JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:43,018,763...43,025,506
Ensembl chr 6:43,018,807...43,025,292 		JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:3335506)
(PMID:11470886) 		UniProt PMID:3335506 PMID:11470886 NCBI chr  X:23,184,921...23,492,836
Ensembl chr  X:23,185,046...23,492,992 		JBrowse link
G POLB DNA polymerase beta involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr21:14,544,083...14,553,315
Ensembl chr21:14,545,986...14,553,217 		JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr11:127,966,879...128,030,442
Ensembl chr11:127,965,896...128,030,292 		JBrowse link
G POLG DNA polymerase gamma, catalytic subunit involved_in IEA UniProt GO_REF:0000117 NCBI chr29:7,864,319...7,881,577
Ensembl chr29:7,863,277...7,882,068 		JBrowse link
G POLH DNA polymerase eta involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:28,548,454...28,585,232
Ensembl chr17:28,549,623...28,585,206 		JBrowse link
G POLI DNA polymerase iota involved_in IEA InterPro GO_REF:0000002 NCBI chr18:26,644,901...26,670,911
Ensembl chr18:26,641,245...26,670,893 		JBrowse link
G POLK DNA polymerase kappa involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr 4:69,842,887...69,948,285
Ensembl chr 4:69,872,752...69,948,249 		JBrowse link
G POLL DNA polymerase lambda involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:94,602,738...94,612,393
Ensembl chr 9:94,601,992...94,611,492 		JBrowse link
G POLM DNA polymerase mu involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr21:14,585,912...14,596,127
Ensembl chr21:14,586,164...14,599,248 		JBrowse link
G POLQ DNA polymerase theta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PSME4 proteasome activator subunit 4 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr14:52,999,960...53,108,624
Ensembl chr14:52,999,960...53,108,885 		JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:1,123,556...1,145,761
Ensembl chr 6:1,125,080...1,145,358 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in IEA TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000118 NCBI chr 4:33,800,279...33,807,986
Ensembl chr 4:33,801,230...33,807,457 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:65,456,174...65,501,665
Ensembl chr 4:65,457,763...65,501,157 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr22:44,878,015...44,960,610
Ensembl chr22:44,875,292...44,960,089 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IEA Ensembl
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G RAD51 RAD51 recombinase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51B RAD51 paralog B involved_in IEA InterPro GO_REF:0000002 Ensembl chr24:45,056,787...45,117,699 JBrowse link
G RAD51C RAD51 paralog C involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr16:34,666,934...34,708,479
Ensembl chr16:34,666,162...34,708,457 		JBrowse link
G RAD51D RAD51 paralog D involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 NCBI chr16:28,603,326...28,623,120
Ensembl chr16:28,604,500...28,622,845 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr11:105,738,247...105,772,539
Ensembl chr11:105,738,867...105,772,002 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr18:57,501,070...57,617,301
Ensembl chr18:57,501,271...57,597,670 		JBrowse link
G RECQL RecQ like helicase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000117 GO_REF:0000118 NCBI chr11:21,334,601...21,366,943
Ensembl chr11:21,331,584...21,366,979 		JBrowse link
G RECQL4 RecQ like helicase 4 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000117 GO_REF:0000118 NCBI chr 8:138,725,494...138,732,286
Ensembl chr 8:138,725,633...138,732,096 		JBrowse link
G RECQL5 RecQ like helicase 5 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr16:46,013,100...46,052,713
Ensembl chr16:46,013,092...46,056,167 		JBrowse link
G REV1 REV1 DNA directed polymerase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr14:3,128,824...3,218,894
Ensembl chr14:3,129,529...3,218,866 		JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr13:62,400,241...62,586,645
Ensembl chr13:62,399,745...62,586,647 		JBrowse link
G REXO4 REX4 homolog, 3'-5' exonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,718,728...4,732,138
Ensembl chr12:4,718,799...4,731,241 		JBrowse link
G RFC1 replication factor C subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr27:10,936,445...11,013,457
Ensembl chr27:10,936,461...11,006,679 		JBrowse link
G RFC2 replication factor C subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:8,818,606...8,846,929
Ensembl chr28:8,818,650...8,847,865 		JBrowse link
G RFC3 replication factor C subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:12,525,512...12,545,046
Ensembl chr 3:12,525,544...12,545,134 		JBrowse link
G RFC4 replication factor C subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:81,081,415...81,097,599
Ensembl chr15:81,081,481...81,097,272 		JBrowse link
G RFC5 replication factor C subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:113,352,342...113,368,147
Ensembl chr11:113,352,378...113,370,829 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494 		JBrowse link
G RIOX1 ribosomal oxygenase 1 acts_upstream_of_or_within ISO (PMID:22736760) UniProt PMID:22736760 NCBI chr24:50,744,200...50,746,925 JBrowse link
G RMI2 RecQ mediated genome instability 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:10,825,721...10,832,563
Ensembl chr 5:10,826,182...10,832,563 		JBrowse link
G RNF138 ring finger protein 138 involved_in IEA UniProt GO_REF:0000043 NCBI chr18:48,604,241...48,643,834
Ensembl chr18:48,603,965...48,642,720 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA UniProt GO_REF:0000043 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G RPA1 replication protein A1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 involved_in IEA InterPro GO_REF:0000002 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPA3 replication protein A3 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:50,570,027...50,574,270
Ensembl chr21:50,570,751...50,574,216 		JBrowse link
G RPA4 replication protein A4 involved_in ISO (PMID:20545304) ComplexPortal PMID:20545304 NCBI chr  X:85,323,910...85,325,997 JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G RRM1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:62,606,112...62,649,979
Ensembl chr 1:62,604,486...62,650,200 		JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in
acts_upstream_of_or_within 		ISO (PMID:11719458)
(PMID:12858174) 		ComplexPortal
MGI		 PMID:11719458 PMID:12858174 NCBI chr 8:97,055,111...97,091,980 JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 Ensembl chr 8:97,055,012...97,092,182 JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 2:531,905...567,430
Ensembl chr 2:531,085...566,840 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:57,641,634...57,699,685
Ensembl chr 2:57,639,046...57,699,525 		JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:22736760) UniProt PMID:22736760 NCBI chr 7:86,476,101...86,528,146
Ensembl chr 7:86,481,726...86,527,779 		JBrowse link
G SFR1 SWI5 dependent homologous recombination repair protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:97,171,948...97,176,232
Ensembl chr 9:97,172,037...97,176,369 		JBrowse link
G SGF29 SAGA complex associated factor 29 acts_upstream_of_or_within ISO (PMID:22736760) UniProt PMID:22736760 NCBI chr 5:26,399,760...26,439,616
Ensembl chr 5:26,399,677...26,439,530 		JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr 5:26,475,234...26,478,844 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595722) UniProt PMID:19595722 NCBI chr 5:3,281,468...3,308,296 JBrowse link
G SMARCA5 SNF2 related chromatin remodeling ATPase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:90,366,359...90,406,707
Ensembl chr 7:90,370,305...90,410,137 		JBrowse link
G SMARCAD1 SNF2 related chromatin remodeling ATPase with DExD box 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:42,468,551...42,552,493
Ensembl chr 7:42,498,601...42,553,661 		JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:102,253,187...102,319,356
Ensembl chr10:102,255,453...102,319,330 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:49,514,652...49,558,490
Ensembl chr  X:49,515,061...49,558,447 		JBrowse link
G SMC6 structural maintenance of chromosomes 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr14:89,917,621...90,005,604
Ensembl chr14:89,917,518...90,000,088 		JBrowse link
G SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:17,103,482...17,217,554
Ensembl chr 5:17,116,231...17,217,488 		JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in ISO
IEA 		RGD
UniProt		 PMID:12718542 GO_REF:0000043 RGD:2317001 NCBI chr11:50,292,780...50,307,828
Ensembl chr11:50,289,154...50,300,492 		JBrowse link
G SPRTN SprT-like N-terminal domain involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr25:68,599,377...68,620,568
Ensembl chr25:68,599,780...68,620,621 		JBrowse link
G SSRP1 structure specific recognition protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:15,907,874...15,918,376
Ensembl chr 1:15,908,495...15,918,596 		JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr29:21,822,520...21,855,552
Ensembl chr29:21,822,393...21,855,923 		JBrowse link
G SWI5 SWI5 homologous recombination repair protein involved_in IEA UniProt GO_REF:0000043 Ensembl chr12:9,838,783...9,852,205 JBrowse link
G TAOK1 TAO kinase 1 involved_in IEA UniProt GO_REF:0000043 Ensembl chr16:23,145,809...23,282,784 JBrowse link
G TAOK3 TAO kinase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr11:113,485,871...113,717,213
Ensembl chr11:113,484,330...113,704,271 		JBrowse link
G TDG thymine DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chr11:99,168,051...99,191,168
Ensembl chr11:99,181,608...99,193,591 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:17948061)
(PMID:21390131) 		UniProt
MGI		 PMID:17948061 PMID:21390131 NCBI chr24:67,672,178...67,762,340 JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in IEA UniProt
Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 Ensembl chr24:67,679,206...67,762,941 JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:47,582,857...47,599,871
Ensembl chr17:47,583,014...47,600,628 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G TONSL tonsoku like, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:138,641,514...138,657,429
Ensembl chr 8:138,641,575...138,656,673 		JBrowse link
G TOP3A DNA topoisomerase III alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:17,315,466...17,358,863
Ensembl chr16:17,316,048...17,358,580 		JBrowse link
G TOP3B DNA topoisomerase III beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:4,137,823...4,163,860
Ensembl chr19:4,137,862...4,166,436 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,820,188...50,826,376
Ensembl chr 6:50,819,833...50,827,010 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:115,789,978...115,946,978
Ensembl chr10:115,789,605...115,945,753 		JBrowse link
G TRRAP transformation/transcription domain associated protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:14,154,962...14,289,110
Ensembl chr28:14,154,960...14,286,512 		JBrowse link
G TTF2 transcription termination factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:16,624,797...16,667,813 JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:37,180,011...37,199,250
Ensembl chr23:37,180,424...37,198,064 		JBrowse link
G UBE2T ubiquitin conjugating enzyme E2 T involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:27,069,971...27,084,360
Ensembl chr25:27,070,240...27,081,749 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G UNG uracil DNA glycosylase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr11:104,302,507...104,325,160 JBrowse link
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,291,189...17,328,768
Ensembl chr 6:17,291,175...17,330,193 		JBrowse link
G USP10 ubiquitin specific peptidase 10 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:70,105,653...70,186,512
Ensembl chr 5:70,139,470...70,185,884 		JBrowse link
G USP3 ubiquitin specific peptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:19,947,806...20,030,515
Ensembl chr26:19,948,453...19,992,638 		JBrowse link
G USP45 ubiquitin specific peptidase 45 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:74,368,043...74,434,884
Ensembl chr13:74,362,564...74,438,133 		JBrowse link
G UVRAG UV radiation resistance associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,032,575...67,353,207
Ensembl chr 1:67,032,436...67,353,166 		JBrowse link
G VCP valosin containing protein involved_in IEA UniProt GO_REF:0000043 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G WDHD1 WD repeat and HMG-box DNA binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:32,118,688...32,204,464
Ensembl chr24:32,117,375...32,204,388 		JBrowse link
G WRN WRN RecQ like helicase involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000117 GO_REF:0000118 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr17:69,366,565...69,386,950
Ensembl chr17:69,366,389...69,386,932 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
G XRCC2 X-ray repair cross complementing 2 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:120,795,188...120,827,737
Ensembl chr21:120,795,212...120,827,706 		JBrowse link
G XRCC3 X-ray repair cross complementing 3 involved_in IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr24:81,627,911...81,641,598
Ensembl chr24:81,630,099...81,641,218 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:77,182,569...77,468,786
Ensembl chr 4:77,182,793...77,468,775 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr10:101,952,909...102,051,059
Ensembl chr10:101,953,067...102,049,964 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:24,160,459...24,204,237
Ensembl chr19:24,160,483...24,206,320 		JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:41,712,721...41,738,853
Ensembl chr24:41,712,114...41,740,654 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:92,605,495...92,648,110
Ensembl chr20:92,605,309...92,648,114 		JBrowse link
G ZNF668 zinc finger protein 668 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:27,749,292...27,761,905
Ensembl chr 5:27,749,164...27,752,954 		JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:19,428,139...19,739,886
Ensembl chr10:19,427,652...19,572,384 		JBrowse link
DNA repair-dependent chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO PMID:19282473 UniProt PMID:19282473 RGD:8553580 NCBI chr 1:58,407,323...58,431,551
Ensembl chr 1:58,421,847...58,431,144 		JBrowse link
G APLF aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G ASF1A anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:54,972,514...54,988,436
Ensembl chr13:54,969,299...54,988,558 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:129,358,759...129,406,293
Ensembl chr  X:129,358,862...129,403,352 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:58,287,331...58,298,519
Ensembl chr22:58,290,764...58,298,376 		JBrowse link
G HDAC3 histone deacetylase 3 involved_in ISO (PMID:25301942) UniProt PMID:25301942 NCBI chr23:44,246,296...44,263,127 JBrowse link
G HDGFL2 HDGF like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,200,031...4,230,941
Ensembl chr 6:4,200,077...4,230,731 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KDM1A lysine demethylase 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G LOC103232044 ubiquitin carboxyl-terminal hydrolase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:51,539,955...51,545,552
Ensembl chr  X:51,542,091...51,544,223 		JBrowse link
G LOC103236518 histone PARylation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:115,934,687...115,966,404
Ensembl chr 7:115,934,692...115,966,369 		JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:20,862,787...20,877,752
Ensembl chr29:20,863,380...20,877,644 		JBrowse link
G PHF1 PHD finger protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:38,650,013...38,655,458
Ensembl chr17:38,648,140...38,655,420 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:32584788) UniProt PMID:32584788 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in ISO (PMID:22884692) UniProt PMID:22884692 NCBI chr10:115,789,978...115,946,978
Ensembl chr10:115,789,605...115,945,753 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:97,104,325...97,257,317
Ensembl chr 8:97,103,220...97,257,440 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G USP3 ubiquitin specific peptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:19,947,806...20,030,515
Ensembl chr26:19,948,453...19,992,638 		JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103235079 transcription factor Spi-B involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:43,446,466...43,490,377
Ensembl chr 6:43,460,747...43,480,112
Ensembl chr 6:43,460,747...43,480,112 		JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:127,966,879...128,030,442
Ensembl chr11:127,965,896...128,030,292 		JBrowse link
G POLG DNA polymerase gamma, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:7,864,319...7,881,577
Ensembl chr29:7,863,277...7,882,068 		JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2D cyclin dependent kinase inhibitor 2D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,579,648...9,582,249
Ensembl chr 6:9,579,470...9,582,101 		JBrowse link
G HROB homologous recombination factor with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:62,230,588...62,251,090
Ensembl chr16:62,230,261...62,250,734 		JBrowse link
G LOC103235079 transcription factor Spi-B involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr 6:43,446,466...43,490,377
Ensembl chr 6:43,460,747...43,480,112
Ensembl chr 6:43,460,747...43,480,112 		JBrowse link
G NYNRIN NYN domain and retroviral integrase containing involved_in IEA UniProt GO_REF:0000117 NCBI chr24:1,380,864...1,401,710
Ensembl chr24:1,381,483...1,401,750 		JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit involved_in IEA UniProt GO_REF:0000117 NCBI chr  X:23,184,921...23,492,836
Ensembl chr  X:23,185,046...23,492,992 		JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:6,910,044...6,912,134
Ensembl chr 1:6,910,159...6,911,813 		JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr11:127,966,879...128,030,442
Ensembl chr11:127,965,896...128,030,292 		JBrowse link
G POLH DNA polymerase eta involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,548,454...28,585,232
Ensembl chr17:28,549,623...28,585,206 		JBrowse link
G POLN DNA polymerase nu involved_in IEA UniProt GO_REF:0000117 Ensembl chr27:46,568,587...46,690,968 JBrowse link
G POLQ DNA polymerase theta involved_in IEA UniProt GO_REF:0000117 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA UniProt GO_REF:0000117 NCBI chr13:62,400,241...62,586,645
Ensembl chr13:62,399,745...62,586,647 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G WRN WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:69,366,565...69,386,950
Ensembl chr17:69,366,389...69,386,932 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1730053) UniProt PMID:1730053 NCBI chr  X:23,184,921...23,492,836
Ensembl chr  X:23,185,046...23,492,992 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:65,832,887...65,885,671 JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:23993650) MGI PMID:23993650 NCBI chr22:9,869,502...9,871,659 JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,852,411...31,875,968
Ensembl chr 7:31,853,490...31,875,189 		JBrowse link
G ACTR5 actin related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO (PMID:17121854) UniProt PMID:17121854 NCBI chr 1:58,407,323...58,431,551
Ensembl chr 1:58,421,847...58,431,144 		JBrowse link
G APLF aprataxin and PNKP like factor involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:21211721) Ensembl
TreeGrafter
MGI
InterPro		 PMID:21211721 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G ATR ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:48,048,785...48,173,120
Ensembl chr15:48,048,882...48,173,137 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr14:79,277,238...79,732,996
Ensembl chr14:79,289,043...79,732,891 		JBrowse link
G BEND2 BEN domain containing 2 acts_upstream_of_or_within ISO (PMID:35613276) MGI PMID:35613276 NCBI chr  X:16,615,823...16,671,541 JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in ISO (PMID:22186889)
(PMID:17525340), (PMID:17643121), (PMID:19261748) 		CACAO
UniProt		 PMID:17525340 PMID:17643121 PMID:19261748 PMID:22186889 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr  X:129,358,759...129,406,293
Ensembl chr  X:129,358,862...129,403,352 		JBrowse link
G CDCA5 cell division cycle associated 5 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:9,151,503...9,157,412
Ensembl chr 1:9,151,712...9,157,456 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in ISO (PMID:18317453) UniProt PMID:18317453 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:22325354) UniProt PMID:22325354 NCBI chr 2:55,982,259...56,047,023 JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:44,093,320...44,133,352
Ensembl chr 5:44,093,215...44,133,335 		JBrowse link
G DCLRE1C DNA cross-link repair 1C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:14,929,221...14,974,791
Ensembl chr 9:14,929,317...14,965,443 		JBrowse link
G DDX1 DEAD-box helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:92,007,446...92,045,414
Ensembl chr14:92,007,036...92,045,190 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:58,287,331...58,298,519
Ensembl chr22:58,290,764...58,298,376 		JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:42,949,059...42,957,323
Ensembl chr16:42,949,570...42,955,312 		JBrowse link
G EME2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:1,682,232...1,685,863
Ensembl chr 5:1,682,249...1,685,260 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in
acts_upstream_of_or_within
NOT|acts_upstream_of_or_within 		IEA
ISO 		(PMID:11707424) UniProt
Ensembl
MGI		 PMID:11707424 GO_REF:0000107 GO_REF:0000117 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:25,885,823...25,919,863
Ensembl chr 8:25,887,309...25,916,630 		JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:46,431,309...46,480,500
Ensembl chr24:46,444,282...46,482,845 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:104,720,487...104,840,902
Ensembl chr20:104,720,482...104,840,883 		JBrowse link
G GGN gametogenetin involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:23451117) InterPro
MGI		 PMID:23451117 GO_REF:0000002 NCBI chr 6:33,026,707...33,031,094 JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO PMID:10866811 UniProt PMID:10866811 RGD:10449519 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G LIG3 DNA ligase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LIG4 DNA ligase 4 acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103236518 histone PARylation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:115,934,687...115,966,404
Ensembl chr 7:115,934,692...115,966,369 		JBrowse link
G LOC103243152 crossover junction endonuclease MUS81 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:53,418,865...53,421,128 JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G MARF1 meiosis regulator and mRNA stability factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:14,616,834...14,663,608
Ensembl chr 5:14,616,814...14,663,520 		JBrowse link
G MEIOC meiosis specific with coiled-coil domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:61,728,877...61,747,896
Ensembl chr16:61,730,370...61,747,767 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G MSH2 mutS homolog 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MTA1 metastasis associated 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:83,315,917...83,368,746 JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:8,410,571...8,411,793 JBrowse link
G NBN nibrin involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G NHEJ1 non-homologous end joining factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr10:104,981,313...105,071,828
Ensembl chr10:104,982,380...105,068,999 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:23230272)
(PMID:21270334)
(PMID:24906880), (PMID:27568560), (PMID:28190768), (PMID:32028527) 		UniProt
MGI		 PMID:21270334 PMID:23230272 PMID:24906880 PMID:27568560 PMID:28190768 More... NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:20,862,787...20,877,752
Ensembl chr29:20,863,380...20,877,644 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:13,310,885...13,316,807
Ensembl chr22:13,310,938...13,320,680 		JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:58,297,526...58,336,243
Ensembl chr22:58,298,046...58,337,124 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G POLN DNA polymerase nu involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr27:46,568,587...46,690,968 JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:12604618)
(PMID:11751629) 		UniProt
Ensembl
TreeGrafter
MGI		 PMID:11751629 PMID:12604618 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:55,299,061...55,335,200
Ensembl chr 2:55,307,711...55,333,874 		JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein involved_in IEA UniProt GO_REF:0000117 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
G RAD54L RAD54 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:86,510,616...86,542,426
Ensembl chr20:86,507,248...86,542,663 		JBrowse link
G RDM1 RAD52 motif containing 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr16:29,406,329...29,419,521
Ensembl chr16:29,402,917...29,419,479 		JBrowse link
G REC8 REC8 meiotic recombination protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,157,135...1,165,927 JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl
TreeGrafter
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF169 ring finger protein 169 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:66,026,454...66,074,422 JBrowse link
G RNF8 ring finger protein 8 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G SETX senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:5,773,122...5,872,372
Ensembl chr12:5,773,165...5,875,481 		JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SMC5 structural maintenance of chromosomes 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:81,317,689...81,426,196 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in ISO (PMID:12023295) UniProt PMID:12023295 NCBI chr24:67,672,178...67,762,340 JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:67,679,206...67,762,941 JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:47,582,857...47,599,871
Ensembl chr17:47,583,014...47,600,628 		JBrowse link
G TNKS1BP1 tankyrase 1 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:15,919,439...15,944,851
Ensembl chr 1:15,922,482...15,945,460 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TRIP13 thyroid hormone receptor interactor 13 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:20711356) Ensembl
UniProt		 PMID:20711356 GO_REF:0000107 NCBI chr 4:737,214...760,263
Ensembl chr 4:737,263...760,171 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G WRN WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:11751629), (PMID:9875844) Ensembl
MGI
InterPro		 PMID:9875844 PMID:11751629 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:77,182,569...77,468,786
Ensembl chr 4:77,182,793...77,468,775 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr10:101,952,909...102,051,059
Ensembl chr10:101,953,067...102,049,964 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 acts_upstream_of_or_within ISO (PMID:11751629) MGI PMID:11751629 NCBI chr19:24,160,459...24,204,237
Ensembl chr19:24,160,483...24,206,320 		JBrowse link
G ZGRF1 zinc finger GRF-type containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:60,322,709...60,407,026
Ensembl chr 7:60,322,750...60,403,124 		JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting DNA helicase 1 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:32,909,226...33,085,551
Ensembl chr16:32,910,693...33,082,587 		JBrowse link
G BRME1 break repair meiotic recombinase recruitment factor 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15834424) InterPro
UniProt		 PMID:15834424 GO_REF:0000002 NCBI chr 6:12,543,242...12,567,863
Ensembl chr 6:12,543,141...12,556,423 		JBrowse link
G DMC1 DNA meiotic recombinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G FANCD2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:46,072,797...46,141,107
Ensembl chr22:46,072,761...46,140,713 		JBrowse link
G HSF2BP heat shock transcription factor 2 binding protein involved_in ISO (PMID:30760716), (PMID:31242413), (PMID:32345962), (PMID:32463460) UniProt PMID:30760716 PMID:31242413 PMID:32345962 PMID:32463460 NCBI chr 2:87,262,882...87,434,217 JBrowse link
G HSF2BP heat shock transcription factor 2 binding protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 2:87,320,826...87,432,845 JBrowse link
G MAJIN membrane anchored junction protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:9,260,903...9,295,888
Ensembl chr 1:9,275,234...9,295,590 		JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:62,742,176...62,790,994
Ensembl chr 8:62,745,855...62,790,143 		JBrowse link
G PRDM9 PR/SET domain 9 involved_in ISO (PMID:25894966), (PMID:29478809) UniProt PMID:25894966 PMID:29478809 NCBI chr 4:22,902,119...22,922,193 JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G SPO11 SPO11 initiator of meiotic double strand breaks acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:6,778,442...6,792,736
Ensembl chr 2:6,778,985...6,792,643 		JBrowse link
G TERB1 telomere repeat binding bouquet formation protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:52,451,929...52,502,628
Ensembl chr 5:52,452,079...52,500,948 		JBrowse link
G TERB2 telomere repeat binding bouquet formation protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:38,226,041...38,247,500
Ensembl chr26:38,226,687...38,247,076 		JBrowse link
double-strand break repair via alternative nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELQ helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,799,072...31,846,942
Ensembl chr 7:31,797,747...31,846,760 		JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:51,759,776...51,785,902
Ensembl chr22:51,759,715...51,785,987 		JBrowse link
G LIG3 DNA ligase 3 involved_in ISO (PMID:24837021)
(PMID:21655080) 		BHF-UCL PMID:21655080 PMID:24837021 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,941,055...2,955,421
Ensembl chr11:2,941,001...2,955,438 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
double-strand break repair via break-induced replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC45 cell division cycle 45 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:6,232,610...6,275,743
Ensembl chr19:6,231,591...6,275,294 		JBrowse link
G GINS2 GINS complex subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:71,088,766...71,099,845
Ensembl chr 5:71,089,564...71,099,688 		JBrowse link
G GINS4 GINS complex subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:39,509,833...39,523,099
Ensembl chr 8:39,509,847...39,526,321 		JBrowse link
G LOC103243152 crossover junction endonuclease MUS81 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr16:53,418,865...53,421,128 JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:53,419,958...53,452,720
Ensembl chr22:53,420,417...53,444,095 		JBrowse link
G MCM3 minichromosome maintenance complex component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:20,222,440...20,243,807
Ensembl chr17:20,222,590...20,243,809 		JBrowse link
G MCM4 minichromosome maintenance complex component 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:44,120,291...44,136,625
Ensembl chr 8:44,120,301...44,138,193 		JBrowse link
G MCM5 minichromosome maintenance complex component 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:18,164,743...18,189,223
Ensembl chr19:18,164,879...18,189,284 		JBrowse link
G MCM6 minichromosome maintenance complex component 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:20,053,726...20,089,571
Ensembl chr10:20,051,138...20,089,545 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:12,976,487...12,985,354
Ensembl chr28:12,977,013...12,985,898 		JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:62,742,176...62,790,994
Ensembl chr 8:62,745,855...62,790,143 		JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 1:8,410,571...8,411,793 JBrowse link
double-strand break repair via classical nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BEND2 BEN domain containing 2 acts_upstream_of_or_within ISO (PMID:35613276) MGI PMID:35613276 NCBI chr  X:16,615,823...16,671,541 JBrowse link
G ERCC6L2 ERCC excision repair 6 like 2 involved_in ISO (PMID:32355287) UniProt PMID:32355287 NCBI chr12:107,095,221...107,224,532
Ensembl chr12:107,095,952...107,224,197 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G LIG4 DNA ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G UVRAG UV radiation resistance associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:67,032,575...67,353,207
Ensembl chr 1:67,032,436...67,353,166 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:24,160,459...24,204,237
Ensembl chr19:24,160,483...24,206,320 		JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,802,171...3,824,552
Ensembl chr 6:3,801,046...3,812,884 		JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKLE1 ankyrin repeat and LEM domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:15,788,861...15,794,825
Ensembl chr 6:15,789,355...15,795,025 		JBrowse link
G AP5S1 adaptor related protein complex 5 subunit sigma 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:34,494,318...34,514,074
Ensembl chr 2:34,508,315...34,514,299 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:16,852,314...16,868,408
Ensembl chr28:16,851,998...16,868,395 		JBrowse link
G ASTE1 asteroid homolog 1 involved_in ISO (PMID:34354233) UniProt PMID:34354233 NCBI chr15:59,178,704...59,186,556 JBrowse link
G ASTE1 asteroid homolog 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:59,179,924...59,193,088 JBrowse link
G ATM ATM serine/threonine kinase acts_upstream_of_or_within
involved_in 		IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G AUNIP aurora kinase A and ninein interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:106,912,338...106,936,183
Ensembl chr20:106,912,431...106,939,583 		JBrowse link
G BLM BLM RecQ like helicase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G BRME1 break repair meiotic recombinase recruitment factor 1 acts_upstream_of_or_within ISO (PMID:15834424) UniProt PMID:15834424 NCBI chr 6:12,543,242...12,567,863
Ensembl chr 6:12,543,141...12,556,423 		JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,603,820...6,641,278
Ensembl chr11:6,602,694...6,640,351 		JBrowse link
G DMC1 DNA meiotic recombinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G EPC1 enhancer of polycomb homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,586,402...31,698,876
Ensembl chr 9:31,585,246...31,665,592 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:26833090) UniProt PMID:26833090 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:46,431,309...46,480,500
Ensembl chr24:46,444,282...46,482,845 		JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:51,720,822...51,759,652
Ensembl chr26:51,725,017...51,759,413 		JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:89,886,102...89,917,485
Ensembl chr14:89,888,853...89,911,293 		JBrowse link
G H2AFX histone H2AX acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:110,466,692...110,468,776
Ensembl chr 1:110,467,775...110,468,206 		JBrowse link
G HELQ helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,799,072...31,846,942
Ensembl chr 7:31,797,747...31,846,760 		JBrowse link
G HTATSF1 HIV-1 Tat specific factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:111,498,102...111,513,959
Ensembl chr  X:111,498,634...111,514,749 		JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G INIP INTS3 and NABP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:26,804,425...26,843,898
Ensembl chr12:26,805,787...26,843,243 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INTS3 integrator complex subunit 3 involved_in ISO (PMID:19683501) ComplexPortal PMID:19683501 NCBI chr20:10,037,176...10,085,499 JBrowse link
G INTS3 integrator complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:10,036,453...10,060,847 JBrowse link
G KASH5 KASH domain containing 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:42,561,606...42,599,442 JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G LOC103248265 lysine-specific demethylase 4D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:86,190,515...86,215,061
Ensembl chr 1:86,212,761...86,214,490 		JBrowse link
G MBTD1 mbt domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:42,085,106...42,169,856
Ensembl chr16:42,084,397...42,163,828 		JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:32,137,983...32,181,187
Ensembl chr 2:32,138,173...32,181,179 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
G MEIOB meiosis specific with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:1,738,250...1,779,412
Ensembl chr 5:1,738,275...1,773,727 		JBrowse link
G MMS22L MMS22 like, DNA repair protein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr13:76,611,574...76,750,893
Ensembl chr13:76,611,517...76,750,616 		JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in ISO (PMID:20332121) UniProt PMID:20332121 NCBI chr26:4,500,848...4,520,830 JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G NABP1 nucleic acid binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:77,210,624...77,222,340
Ensembl chr10:77,210,702...77,218,289 		JBrowse link
G NABP2 nucleic acid binding protein 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:52,176,021...52,183,204
Ensembl chr11:52,177,987...52,182,572 		JBrowse link
G NBN nibrin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G NSMCE1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:24,930,592...24,973,994
Ensembl chr 5:24,930,347...24,974,054 		JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:119,679,090...119,949,212
Ensembl chr 8:119,691,106...119,949,587 		JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:23,597,210...23,634,262
Ensembl chr25:23,597,464...23,629,169 		JBrowse link
G PALB2 partner and localizer of BRCA2 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:21,322,952...21,358,363
Ensembl chr 5:21,322,975...21,358,198 		JBrowse link
G POGZ pogo transposable element derived with ZNF domain acts_upstream_of_or_within_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr20:12,236,036...12,290,937
Ensembl chr20:12,236,145...12,290,956 		JBrowse link
G POLL DNA polymerase lambda involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:94,602,738...94,612,393
Ensembl chr 9:94,601,992...94,611,492 		JBrowse link
G POLN DNA polymerase nu involved_in ISO (PMID:19995904) UniProt PMID:19995904 NCBI chr27:46,523,052...46,694,474 JBrowse link
G POLN DNA polymerase nu involved_in IEA Ensembl GO_REF:0000107 Ensembl chr27:46,568,587...46,690,968 JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:46,703,876...46,814,938
Ensembl chr10:46,704,098...46,815,132 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:55,299,061...55,335,200
Ensembl chr 2:55,307,711...55,333,874 		JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G RAD51 RAD51 recombinase acts_upstream_of_or_within
involved_in 		ISO
IEA 		RGD
Ensembl
InterPro		 PMID:14755242 GO_REF:0000002 GO_REF:0000107 RGD:9831188 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RAD51B RAD51 paralog B involved_in ISO (PMID:23149936) UniProt PMID:23149936 NCBI chr24:45,056,485...45,704,394 JBrowse link
G RAD51B RAD51 paralog B involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 Ensembl chr24:45,056,787...45,117,699 JBrowse link
G RAD51C RAD51 paralog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:34,666,934...34,708,479
Ensembl chr16:34,666,162...34,708,457 		JBrowse link
G RAD51D RAD51 paralog D involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,603,326...28,623,120
Ensembl chr16:28,604,500...28,622,845 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
G RAD54B RAD54 homolog B involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:89,351,203...89,450,047
Ensembl chr 8:89,351,415...89,442,825 		JBrowse link
G RAD54L RAD54 like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:86,510,616...86,542,426
Ensembl chr20:86,507,248...86,542,663 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:57,501,070...57,617,301
Ensembl chr18:57,501,271...57,597,670 		JBrowse link
G REC8 REC8 meiotic recombination protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:1,157,135...1,165,927 JBrowse link
G RECQL RecQ like helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:21,334,601...21,366,943
Ensembl chr11:21,331,584...21,366,979 		JBrowse link
G RECQL4 RecQ like helicase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:138,725,494...138,732,286
Ensembl chr 8:138,725,633...138,732,096 		JBrowse link
G RECQL5 RecQ like helicase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:46,013,100...46,052,713
Ensembl chr16:46,013,092...46,056,167 		JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:62,400,241...62,586,645
Ensembl chr13:62,399,745...62,586,647 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494 		JBrowse link
G RMI1 RecQ mediated genome instability 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:94,792,202...94,816,112
Ensembl chr12:94,813,042...94,814,919 		JBrowse link
G RMI2 RecQ mediated genome instability 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:10,825,721...10,832,563
Ensembl chr 5:10,826,182...10,832,563 		JBrowse link
G RNF138 ring finger protein 138 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:48,604,241...48,643,834
Ensembl chr18:48,603,965...48,642,720 		JBrowse link
G RNF169 ring finger protein 169 involved_in ISO (PMID:22492721) UniProt PMID:22492721 NCBI chr 1:65,990,538...66,080,163 JBrowse link
G RNF169 ring finger protein 169 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:66,026,454...66,074,422 JBrowse link
G RPA1 replication protein A1 involved_in
acts_upstream_of_or_within 		IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:17765923) UniProt PMID:17765923 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPA3 replication protein A3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:50,570,027...50,574,270
Ensembl chr21:50,570,751...50,574,216 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:57,641,634...57,699,685
Ensembl chr 2:57,639,046...57,699,525 		JBrowse link
G SEM1 SEM1 26S proteasome complex subunit involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:52,342,382...52,364,110
Ensembl chr21:52,342,397...52,364,103 		JBrowse link
G SFPQ splicing factor proline and glutamine rich acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:97,698,953...97,715,762
Ensembl chr20:97,698,411...97,711,294 		JBrowse link
G SFR1 SWI5 dependent homologous recombination repair protein 1 involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:97,171,948...97,176,232
Ensembl chr 9:97,172,037...97,176,369 		JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:26,475,234...26,478,844 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595721), (PMID:19596235) UniProt PMID:19595721 PMID:19596235 NCBI chr 5:3,281,468...3,308,296 JBrowse link
G SMC5 structural maintenance of chromosomes 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:81,317,689...81,426,196 JBrowse link
G SMC6 structural maintenance of chromosomes 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:89,917,621...90,005,604
Ensembl chr14:89,917,518...90,000,088 		JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:43,380,207...43,872,077
Ensembl chr 8:43,380,244...43,872,937 		JBrowse link
G SWI5 SWI5 homologous recombination repair protein involved_in ISO (PMID:21252223)
(PMID:20976249) 		UniProt PMID:20976249 PMID:21252223 NCBI chr12:9,840,286...9,852,397 JBrowse link
G SWI5 SWI5 homologous recombination repair protein involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr12:9,838,783...9,852,205 JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:10,308,727...10,311,657
Ensembl chr 6:10,310,178...10,311,509 		JBrowse link
G TONSL tonsoku like, DNA repair protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:138,641,514...138,657,429
Ensembl chr 8:138,641,575...138,656,673 		JBrowse link
G TOP3A DNA topoisomerase III alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:17,315,466...17,358,863
Ensembl chr16:17,316,048...17,358,580 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N acts_upstream_of ISO (PMID:17349954) HGNC-UCL PMID:17349954 NCBI chr11:88,810,505...88,842,895 JBrowse link
G WDR48 WD repeat domain 48 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:319,589...366,265
Ensembl chr15:319,810...366,246 		JBrowse link
G WRN WRN RecQ like helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G XRCC2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr21:120,795,188...120,827,737
Ensembl chr21:120,795,212...120,827,706 		JBrowse link
G XRCC3 X-ray repair cross complementing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:81,627,911...81,641,598
Ensembl chr24:81,630,099...81,641,218 		JBrowse link
G YY1 YY1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr24:44,986,610...45,053,801
Ensembl chr24:44,986,609...45,053,134 		JBrowse link
G ZMYND8 zinc finger MYND-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:16,547,144...16,696,729
Ensembl chr 2:16,622,702...16,696,878 		JBrowse link
G ZSWIM7 zinc finger SWIM-type containing 7 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:15,662,268...15,681,875
Ensembl chr16:15,662,215...15,681,561 		JBrowse link
double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:21211721) Ensembl
MGI		 PMID:21211721 GO_REF:0000107 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G ASTE1 asteroid homolog 1 involved_in ISO (PMID:34354233) UniProt PMID:34354233 NCBI chr15:59,178,704...59,186,556 JBrowse link
G ASTE1 asteroid homolog 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:59,179,924...59,193,088 JBrowse link
G CYREN cell cycle regulator of NHEJ involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:103,838,218...103,843,151
Ensembl chr21:103,838,988...103,842,620 		JBrowse link
G DCLRE1A DNA cross-link repair 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:106,713,857...106,735,268
Ensembl chr 9:106,713,895...106,731,999 		JBrowse link
G DCLRE1B DNA cross-link repair 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:19,750,106...19,757,190
Ensembl chr20:19,748,898...19,756,901 		JBrowse link
G DCLRE1C DNA cross-link repair 1C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:14,929,221...14,974,791
Ensembl chr 9:14,929,317...14,965,443 		JBrowse link
G DNTT DNA nucleotidylexotransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:89,459,347...89,494,985
Ensembl chr 9:89,458,820...89,497,013 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:9600082) GO_Central PMID:9600082 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HMGB2 high mobility group box 2 involved_in ISO (PMID:9600082) GO_Central PMID:9600082 NCBI chr 7:119,440,089...119,442,806
Ensembl chr 7:119,440,468...119,443,578 		JBrowse link
G IFFO1 intermediate filament family orphan 1 involved_in ISO (PMID:31548606) UniProt PMID:31548606 NCBI chr11:6,573,998...6,589,493
Ensembl chr11:6,573,684...6,589,570 		JBrowse link
G KDM2A lysine demethylase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:7,004,109...7,152,072
Ensembl chr 1:7,003,784...7,082,720 		JBrowse link
G LIG1 DNA ligase 1 acts_upstream_of_or_within ISO (PMID:21655080) MGI PMID:21655080 NCBI chr 6:41,354,701...41,405,417
Ensembl chr 6:41,351,389...41,403,421 		JBrowse link
G LIG3 DNA ligase 3 acts_upstream_of_or_within ISO (PMID:21655080) MGI PMID:21655080 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LIG4 DNA ligase 4 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G MLH1 mutL homolog 1 acts_upstream_of_or_within ISO (PMID:15084308) MGI PMID:15084308 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G NHEJ1 non-homologous end joining factor 1 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr10:104,981,313...105,071,828
Ensembl chr10:104,982,380...105,068,999 		JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase NOT|involved_in ISO (PMID:16810316) UniProt PMID:16810316 NCBI chr 8:119,679,090...119,949,212
Ensembl chr 8:119,691,106...119,949,587 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:13,310,885...13,316,807
Ensembl chr22:13,310,938...13,320,680 		JBrowse link
G PAXX PAXX non-homologous end joining factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr12:1,200,945...1,202,628
Ensembl chr12:1,201,116...1,202,505 		JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,018,763...43,025,506
Ensembl chr 6:43,018,807...43,025,292 		JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) UniProt PMID:11470886 NCBI chr  X:23,184,921...23,492,836
Ensembl chr  X:23,185,046...23,492,992 		JBrowse link
G POLB DNA polymerase beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLL DNA polymerase lambda involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:94,602,738...94,612,393
Ensembl chr 9:94,601,992...94,611,492 		JBrowse link
G POLM DNA polymerase mu involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:14,585,912...14,596,127
Ensembl chr21:14,586,164...14,599,248 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:23836881) InterPro
MGI		 PMID:23836881 GO_REF:0000002 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:46,703,876...46,814,938
Ensembl chr10:46,704,098...46,815,132 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G SETMAR SET domain and mariner transposase fusion gene involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:40,389,390...40,403,917
Ensembl chr22:40,389,485...40,403,898 		JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:102,253,187...102,319,356
Ensembl chr10:102,255,453...102,319,330 		JBrowse link
G SMC5 structural maintenance of chromosomes 5 NOT|involved_in ISO (PMID:16810316) UniProt PMID:16810316 NCBI chr12:81,317,689...81,426,196 JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:17713479) Ensembl
TreeGrafter
MGI
UniProt		 PMID:17713479 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chr 4:77,182,569...77,468,786
Ensembl chr 4:77,182,793...77,468,775 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:101,952,909...102,051,059
Ensembl chr10:101,953,067...102,049,964 		JBrowse link
G XRCC6 X-ray repair cross complementing 6 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:11751629) InterPro
TreeGrafter
MGI
Ensembl		 PMID:11751629 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr19:24,160,459...24,204,237
Ensembl chr19:24,160,483...24,206,320 		JBrowse link
double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD52 RAD52 homolog, DNA repair protein involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
double-strand break repair via synthesis-dependent strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FANCM FA complementation group M involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:22,255,750...22,327,191
Ensembl chr24:22,256,236...22,329,609 		JBrowse link
G HELQ helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,799,072...31,846,942
Ensembl chr 7:31,797,747...31,846,760 		JBrowse link
G RAD54L RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:86,510,616...86,542,426
Ensembl chr20:86,507,248...86,542,663 		JBrowse link
G XRCC3 X-ray repair cross complementing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:81,627,911...81,641,598
Ensembl chr24:81,630,099...81,641,218 		JBrowse link
error-free postreplication DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBE2V1 ubiquitin conjugating enzyme E2 V1 acts_upstream_of_or_within ISO (PMID:11406273) MGI PMID:11406273 NCBI chr 2:13,854,815...13,890,057 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 acts_upstream_of_or_within ISO (PMID:11406273) MGI PMID:11406273 NCBI chr 8:44,167,214...44,218,074 JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103235079 transcription factor Spi-B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,446,466...43,490,377
Ensembl chr 6:43,460,747...43,480,112
Ensembl chr 6:43,460,747...43,480,112 		JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:22,113,928...22,124,637
Ensembl chr16:22,110,641...22,124,301 		JBrowse link
G REV1 REV1 DNA directed polymerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:3,128,824...3,218,894
Ensembl chr14:3,129,529...3,218,866 		JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:14,544,083...14,553,315
Ensembl chr21:14,545,986...14,553,217 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:24449906) ComplexPortal PMID:24449906 NCBI chr 1:65,832,887...65,885,671 JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:26,682,627...26,736,266
Ensembl chr24:26,682,723...26,736,171 		JBrowse link
G POLH DNA polymerase eta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:28,548,454...28,585,232
Ensembl chr17:28,549,623...28,585,206 		JBrowse link
G POLK DNA polymerase kappa involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:69,842,887...69,948,285
Ensembl chr 4:69,872,752...69,948,249 		JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G PRIMPOL primase and DNA directed polymerase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:130,611,105...130,653,614
Ensembl chr 7:130,611,133...130,657,450 		JBrowse link
G REV1 REV1 DNA directed polymerase involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:3,128,824...3,218,894
Ensembl chr14:3,129,529...3,218,866 		JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:62,400,241...62,586,645
Ensembl chr13:62,399,745...62,586,647 		JBrowse link
interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPS centromere protein S involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:121,333,554...121,343,893
Ensembl chr20:121,340,995...121,353,902
Ensembl chr20:121,340,995...121,353,902 		JBrowse link
G CENPX centromere protein X involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,905,670...73,910,622
Ensembl chr16:73,905,600...73,910,322 		JBrowse link
G DCLRE1A DNA cross-link repair 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:106,713,857...106,735,268
Ensembl chr 9:106,713,895...106,731,999 		JBrowse link
G DCLRE1B DNA cross-link repair 1B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:19,750,106...19,757,190
Ensembl chr20:19,748,898...19,756,901 		JBrowse link
G DCLRE1C DNA cross-link repair 1C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:14,929,221...14,974,791
Ensembl chr 9:14,929,317...14,965,443 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC6L2 ERCC excision repair 6 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:107,095,221...107,224,532
Ensembl chr12:107,095,952...107,224,197 		JBrowse link
G EXO5 exonuclease 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:92,404,277...92,412,901
Ensembl chr20:92,405,155...92,406,276 		JBrowse link
G FAAP20 FA core complex associated protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:129,357,043...129,373,409
Ensembl chr20:129,357,089...129,362,518 		JBrowse link
G FAAP24 FA core complex associated protein 24 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:28,012,664...28,018,612
Ensembl chr 6:28,012,808...28,019,627 		JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr26:51,720,822...51,759,652
Ensembl chr26:51,725,017...51,759,413 		JBrowse link
G FANCA FA complementation group A involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:75,073,161...75,149,110
Ensembl chr 5:75,073,358...75,148,591 		JBrowse link
G FANCB FA complementation group B involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:13,321,304...13,352,368
Ensembl chr  X:13,321,527...13,342,478 		JBrowse link
G FANCC FA complementation group C involved_in IEA InterPro GO_REF:0000002 NCBI chr12:107,780,087...107,991,828
Ensembl chr12:107,845,135...107,991,237 		JBrowse link
G FANCD2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:46,072,797...46,141,107
Ensembl chr22:46,072,761...46,140,713 		JBrowse link
G FANCE FA complementation group E involved_in IEA InterPro GO_REF:0000002 Ensembl chr17:36,659,169...36,667,784 JBrowse link
G FANCF FA complementation group F involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:42,377,150...42,381,653
Ensembl chr 1:42,378,883...42,380,007 		JBrowse link
G FANCG FA complementation group G involved_in IEA InterPro GO_REF:0000002 NCBI chr12:45,537,817...45,544,038
Ensembl chr12:45,538,303...45,543,766 		JBrowse link
G FANCL FA complementation group L involved_in IEA InterPro GO_REF:0000002 NCBI chr14:48,725,447...48,803,892
Ensembl chr14:48,725,541...48,805,356 		JBrowse link
G FANCM FA complementation group M involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:22,255,750...22,327,191
Ensembl chr24:22,256,236...22,329,609 		JBrowse link
G FIRRM FIGNL1 interacting regulator of recombination and mitosis involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:59,199,252...59,257,760
Ensembl chr25:59,199,316...59,257,670 		JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:51,759,776...51,785,902
Ensembl chr22:51,759,715...51,785,987 		JBrowse link
G HROB homologous recombination factor with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:62,230,588...62,251,090
Ensembl chr16:62,230,261...62,250,734 		JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:23,597,210...23,634,262
Ensembl chr25:23,597,464...23,629,169 		JBrowse link
G POLN DNA polymerase nu involved_in ISO (PMID:19908865), (PMID:19995904) UniProt PMID:19908865 PMID:19995904 NCBI chr27:46,523,052...46,694,474 JBrowse link
G POLN DNA polymerase nu involved_in IEA Ensembl GO_REF:0000107 Ensembl chr27:46,568,587...46,690,968 JBrowse link
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RAD51D RAD51 paralog D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:28,603,326...28,623,120
Ensembl chr16:28,604,500...28,622,845 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494 		JBrowse link
G SPRTN SprT-like N-terminal domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:68,599,377...68,620,568
Ensembl chr25:68,599,780...68,620,621 		JBrowse link
G XRCC3 X-ray repair cross complementing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:81,627,911...81,641,598
Ensembl chr24:81,630,099...81,641,218 		JBrowse link
intrinsic apoptotic signaling pathway in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:25,536,911...25,597,911
Ensembl chr16:25,538,131...25,597,695 		JBrowse link
G ATM ATM serine/threonine kinase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G BAD BCL2 associated agonist of cell death acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:9,949,717...9,964,433
Ensembl chr 1:9,949,762...9,964,432 		JBrowse link
G BAK1 BCL2 antagonist/killer 1 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:38,492,776...38,502,534
Ensembl chr17:38,492,858...38,501,281 		JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within
involved_in 		ISO (PMID:12952892)
(PMID:11912183)
(PMID:15901672)
(PMID:15967824) 		MGI
HGNC-UCL		 PMID:11912183 PMID:12952892 PMID:15901672 PMID:15967824 NCBI chr 6:42,186,028...42,193,105 JBrowse link
G BAX BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 6:42,186,238...42,194,115 JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G BCL2A1 BCL2 related protein A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:3,451,773...3,461,215
Ensembl chr26:3,451,873...3,461,180 		JBrowse link
G BCL2L1 BCL2 like 1 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:36,059,024...36,118,332
Ensembl chr 2:36,058,919...36,116,470 		JBrowse link
G BCL2L10 BCL2 like 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:31,274,015...31,277,377
Ensembl chr26:31,274,119...31,276,937 		JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within ISO (PMID:11546872)
(PMID:15967824) 		MGI PMID:11546872 PMID:15967824 NCBI chr14:14,178,159...14,205,337 JBrowse link
G BCL2L11 BCL2 like 11 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr14:14,176,417...14,208,805 JBrowse link
G BOK BCL2 family apoptosis regulator BOK involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:127,621,936...127,634,091
Ensembl chr10:127,622,149...127,635,833 		JBrowse link
G BRCA1 BRCA1 DNA repair associated acts_upstream_of_or_within ISO (PMID:14654789) MGI PMID:14654789 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G CASP9 caspase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:116,772,819...116,798,402
Ensembl chr20:116,772,155...116,798,930 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in ISO (PMID:12717439), (PMID:18644861)
(PMID:12402044) 		UniProt PMID:12402044 PMID:12717439 PMID:18644861 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G CRIP1 cysteine rich protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:83,385,005...83,386,596
Ensembl chr24:83,384,529...83,386,903 		JBrowse link
G E2F1 E2F transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:37,968,541...37,980,461
Ensembl chr 2:37,968,556...37,980,326 		JBrowse link
G EI24 EI24 autophagy associated transmembrane protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:116,711,922...116,727,208
Ensembl chr 1:116,714,578...116,726,216 		JBrowse link
G EPHA2 EPH receptor A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:116,147,077...116,178,647
Ensembl chr20:116,147,040...116,178,644 		JBrowse link
G FNIP2 folliculin interacting protein 2 involved_in ISO (PMID:19137017) UniProt PMID:19137017 NCBI chr 7:105,344,950...105,445,313
Ensembl chr 7:105,345,920...105,445,452 		JBrowse link
G HIC1 HIC ZBTB transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,687,560...1,697,888
Ensembl chr16:1,694,341...1,697,023 		JBrowse link
G HMOX1 heme oxygenase 1 ISO RGD PMID:11854317 RGD:625692 NCBI chr19:18,144,466...18,157,944
Ensembl chr19:18,144,545...18,157,971 		JBrowse link
G HTRA2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:32,745,436...32,749,176
Ensembl chr14:32,743,708...32,748,577 		JBrowse link
G IER3 immediate early response 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:41,712,539...41,713,895
Ensembl chr17:41,712,528...41,714,126 		JBrowse link
G IKBKE inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,865,720...22,892,346
Ensembl chr25:22,865,734...22,891,920 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G LOC103231469 polyadenylate-binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:23,692,252...23,697,882
Ensembl chr29:23,679,736...23,686,349
Ensembl chr29:23,679,736...23,686,349 		JBrowse link
G MAEL maelstrom spermatogenic transposon silencer acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:62,011,292...62,057,860
Ensembl chr25:62,011,651...62,044,529 		JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase acts_upstream_of_or_within ISO (PMID:14562041) MGI PMID:14562041 NCBI chr22:51,616,840...51,626,232
Ensembl chr22:51,616,803...51,626,224 		JBrowse link
G MCL1 MCL1 apoptosis regulator, BCL2 family member involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118
G MLH1 mutL homolog 1 acts_upstream_of_or_within ISO (PMID:14562041) MGI PMID:14562041 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:70,920,083...70,921,138 JBrowse link
G MSH2 mutS homolog 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MSH6 mutS homolog 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:59,375,602...59,400,252
Ensembl chr14:59,375,691...59,400,174 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:122,282,989...122,288,392
Ensembl chr 8:122,282,630...122,288,384 		JBrowse link
G NFATC4 nuclear factor of activated T cells 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:1,352,173...1,362,150
Ensembl chr24:1,352,291...1,362,680 		JBrowse link
G PCBP4 poly(rC) binding protein 4 involved_in ISO (PMID:10891498) UniProt PMID:10891498 NCBI chr22:13,326,069...13,336,474
Ensembl chr22:13,325,551...13,329,903 		JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:64,321,296...64,406,188
Ensembl chr 4:64,321,078...64,406,519 		JBrowse link
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO (PMID:12952892) MGI PMID:12952892 NCBI chr18:19,861,182...19,865,628
Ensembl chr18:19,862,743...19,865,250 		JBrowse link
G PML PML nuclear body scaffold acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15626733)
(PMID:9806545) 		MGI
TreeGrafter		 PMID:9806545 PMID:15626733 GO_REF:0000118 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931 		JBrowse link
G POLB DNA polymerase beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:12604618) MGI
TreeGrafter		 PMID:12604618 GO_REF:0000118 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G SFN stratifin involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:105,902,481...105,904,313
Ensembl chr20:105,902,974...105,903,720 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SKIL SKI like proto-oncogene acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr15:19,022,167...19,059,117
Ensembl chr15:19,022,017...19,057,004 		JBrowse link
G SOD2 superoxide dismutase 2 acts_upstream_of_or_within ISO (PMID:15642323) MGI PMID:15642323 NCBI chr13:87,284,537...87,297,998
Ensembl chr13:87,280,686...87,297,974 		JBrowse link
G TNF tumor necrosis factor acts_upstream_of_or_within ISO (PMID:17242187) MGI PMID:17242187
G TNFRSF1A TNF receptor superfamily member 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:6,364,544...6,378,880
Ensembl chr11:6,364,330...6,378,902 		JBrowse link
G TNFRSF1B TNF receptor superfamily member 1B involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:119,590,621...119,633,562
Ensembl chr20:119,590,325...119,633,497 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,702,638...47,714,309
Ensembl chr12:47,702,995...47,714,338 		JBrowse link
G UACA uveal autoantigen with coiled-coil domains and ankyrin repeats acts_upstream_of_or_within ISO (PMID:15271982) MGI PMID:15271982 NCBI chr26:12,693,208...12,792,900
Ensembl chr26:12,749,774...12,795,279 		JBrowse link
G USP47 ubiquitin specific peptidase 47 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 1:52,872,514...52,989,111
Ensembl chr 1:52,875,465...52,988,505 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AEN apoptosis enhancing nuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr29:7,160,445...7,172,082
Ensembl chr29:7,165,964...7,172,304 		JBrowse link
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:25,536,911...25,597,911
Ensembl chr16:25,538,131...25,597,695 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISO (PMID:17403783) UniProt PMID:17403783
G BBC3 BCL2 binding component 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:40,560,550...40,572,428
Ensembl chr 6:40,561,274...40,567,853 		JBrowse link
G BCL3 BCL3 transcription coactivator acts_upstream_of_or_within ISO (PMID:16384933) MGI PMID:16384933 NCBI chr 6:38,228,137...38,243,767 JBrowse link
G BCL3 BCL3 transcription coactivator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 6:38,229,459...38,244,150 JBrowse link
G BRCA2 BRCA2 DNA repair associated acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G CDIP1 cell death inducing p53 target 1 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:4,201,578...4,230,583
Ensembl chr 5:4,199,922...4,230,533 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:35,445,668...35,454,334
Ensembl chr17:35,445,223...35,454,342 		JBrowse link
G CHEK2 checkpoint kinase 2 acts_upstream_of_or_within ISO (PMID:10710310) MGI PMID:10710310 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G DDIT4 DNA damage inducible transcript 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:59,033,058...59,035,157
Ensembl chr 9:59,032,755...59,035,241 		JBrowse link
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:63,294,035...63,308,008
Ensembl chr11:63,294,444...63,304,080 		JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr26:39,268,461...39,273,833
Ensembl chr26:39,269,538...39,273,321 		JBrowse link
G EP300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:19,680,952...19,731,503
Ensembl chr20:19,680,778...19,730,129 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:108,310,782...108,533,274
Ensembl chr21:108,322,096...108,533,226 		JBrowse link
G IFI16 interferon gamma inducible protein 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:4,891,816...4,933,476
Ensembl chr20:4,888,779...4,933,478 		JBrowse link
G MSH2 mutS homolog 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 5:26,382,125...26,385,605
Ensembl chr 5:26,382,132...26,385,348 		JBrowse link
G PHLDA3 pleckstrin homology like domain family A member 3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:27,945,013...27,948,870
Ensembl chr25:27,945,608...27,945,991 		JBrowse link
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO (PMID:10807576) MGI PMID:10807576 NCBI chr18:19,861,182...19,865,628
Ensembl chr18:19,862,743...19,865,250 		JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:15626733) UniProt PMID:15626733 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931 		JBrowse link
G PPP2R5C protein phosphatase 2 regulatory subunit B'gamma involved_in ISO (PMID:17245430) UniProt PMID:17245430 NCBI chr24:79,703,316...79,875,379
Ensembl chr24:79,703,312...79,875,389 		JBrowse link
G PYCARD PYD and CARD domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:27,892,332...27,894,386
Ensembl chr 5:27,889,230...27,893,697 		JBrowse link
G RPS27L ribosomal protein S27 like involved_in ISO (PMID:17057733), (PMID:18056458) UniProt PMID:17057733 PMID:18056458 NCBI chr26:20,385,684...20,389,351 JBrowse link
G SHISA5 shisa family member 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:9,871,882...9,905,733
Ensembl chr22:9,873,019...9,905,308 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SNW1 SNW domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G TMEM109 transmembrane protein 109 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:12,924,736...12,934,755
Ensembl chr 1:12,924,606...12,934,810 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:47,702,638...47,714,309
Ensembl chr12:47,702,995...47,714,338 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:14654789), (PMID:14744935)
(PMID:16777961)
(PMID:15983387)
(PMID:12952892)
(PMID:12135983)
(PMID:16286009)
(PMID:17476307) 		MGI
Ensembl		 PMID:12135983 PMID:12952892 PMID:14654789 PMID:14744935 PMID:15983387 More... GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within ISO (PMID:17122775) MGI PMID:17122775 NCBI chr15:83,861,489...84,126,675 JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr15:84,093,957...84,123,905 JBrowse link
G TP73 tumor protein p73 involved_in
acts_upstream_of 		IEA Ensembl GO_REF:0000107 NCBI chr20:127,958,002...128,035,792
Ensembl chr20:127,958,809...128,013,691 		JBrowse link
G USP28 ubiquitin specific peptidase 28 involved_in ISO (PMID:16901786) UniProt PMID:16901786 NCBI chr 1:105,175,116...105,257,163
Ensembl chr 1:105,175,067...105,257,102 		JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:62,742,176...62,790,994
Ensembl chr 8:62,745,855...62,790,143 		JBrowse link
meiotic DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPO11 SPO11 initiator of meiotic double strand breaks involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:6,778,442...6,792,736
Ensembl chr 2:6,778,985...6,792,643 		JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting DNA helicase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:32,909,226...33,085,551
Ensembl chr16:32,910,693...33,082,587 		JBrowse link
G CUNH14orf39 chromosome unknown C14orf39 homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:37,596,061...37,707,136
Ensembl chr24:37,626,089...37,676,361 		JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51C RAD51 paralog C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:34,666,934...34,708,479
Ensembl chr16:34,666,162...34,708,457 		JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPATA22 spermatogenesis associated 22 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:2,952,912...2,977,812
Ensembl chr16:2,952,968...2,975,704 		JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:18,712,236...18,827,120
Ensembl chr20:18,712,587...18,823,277 		JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chr11:96,980,937...96,992,225 JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:62,742,176...62,790,994
Ensembl chr 8:62,745,855...62,790,143 		JBrowse link
mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXO1 exonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:78,934,337...78,976,346
Ensembl chr25:78,934,459...78,976,219 		JBrowse link
G LOC103246803 mismatch repair endonuclease PMS2 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr28:15,174,359...15,209,962
Ensembl chr28:15,172,100...15,209,852 		JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MLH3 mutL homolog 3 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr24:52,231,468...52,266,179 JBrowse link
G MSH2 mutS homolog 2 involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MSH3 mutS homolog 3 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:11691815)
(PMID:10706084)
(PMID:16728433)
(PMID:10706084), (PMID:16728433) 		InterPro
Ensembl
TreeGrafter
MGI		 PMID:10706084 PMID:11691815 PMID:16728433 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:74,811,181...75,032,067
Ensembl chr 4:74,811,198...75,032,005 		JBrowse link
G MSH4 mutS homolog 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:57,283,723...57,397,871
Ensembl chr20:57,284,575...57,396,797 		JBrowse link
G MSH5 mutS homolog 5 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr17:40,260,979...40,283,872
Ensembl chr17:40,261,125...40,282,511 		JBrowse link
G MSH6 mutS homolog 6 involved_in
acts_upstream_of_or_within 		ISO
IEA 		RGD
Ensembl
TreeGrafter
InterPro		 PMID:18417481 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2292505 NCBI chr14:59,375,602...59,400,252
Ensembl chr14:59,375,691...59,400,174 		JBrowse link
G MUTYH mutY DNA glycosylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:87,449,480...87,462,329
Ensembl chr20:87,448,986...87,462,265 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:32,936,600...32,953,635
Ensembl chr 2:32,948,196...32,953,991 		JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:75,305,129...75,392,193
Ensembl chr10:75,311,887...75,392,590 		JBrowse link
G RNASEH2A ribonuclease H2 subunit A involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:11,493,752...11,501,167
Ensembl chr 6:11,493,764...11,501,363 		JBrowse link
G RPA1 replication protein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:9430682) UniProt PMID:9430682 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPA3 replication protein A3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:50,570,027...50,574,270
Ensembl chr21:50,570,751...50,574,216 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:8,421,178...8,567,221
Ensembl chr22:8,420,960...8,567,201 		JBrowse link
G WRN WRN RecQ like helicase involved_in ISO (PMID:17715146) BHF-UCL PMID:17715146 NCBI chr 8:29,150,256...29,288,830
Ensembl chr 8:29,174,229...29,289,129 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
mitochondrial DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 acts_upstream_of_or_within ISO (PMID:24101517) MGI PMID:24101517 NCBI chr22:50,055,130...50,067,917
Ensembl chr22:50,054,007...50,067,940 		JBrowse link
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,926,221...62,985,843
Ensembl chr 9:62,926,674...62,985,842 		JBrowse link
G LIG3 DNA ligase 3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:21390131), (PMID:21390132) MGI
Ensembl		 PMID:21390131 PMID:21390132 GO_REF:0000107 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G MGME1 mitochondrial genome maintenance exonuclease 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 2:47,028,568...47,050,950
Ensembl chr 2:47,029,329...47,050,948 		JBrowse link
G NEURL4 neuralized E3 ubiquitin protein ligase 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:6,694,318...6,708,055
Ensembl chr16:6,694,187...6,707,979 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:25378300) MGI PMID:25378300 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PRIMPOL primase and DNA directed polymerase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:130,611,105...130,653,614
Ensembl chr 7:130,611,133...130,657,450 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
mitochondrial double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
mitotic DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC7 cell division cycle 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:41,714,250...41,739,159
Ensembl chr20:41,715,572...41,739,138 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G LOC103226086 cell division cycle 7-related protein kinase-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:9,494,995...9,496,895 JBrowse link
G ZNF830 zinc finger protein 830 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,468,548...28,470,150
Ensembl chr16:28,468,616...28,469,734 		JBrowse link
mitotic G1 DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCND1 cyclin D1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:4,909,616...4,922,272
Ensembl chr 1:4,907,353...4,922,357 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr17:35,445,668...35,454,334
Ensembl chr17:35,445,223...35,454,342 		JBrowse link
G DGKZ diacylglycerol kinase zeta involved_in ISO (PMID:16286473) UniProt PMID:16286473 NCBI chr 1:18,949,360...18,997,957
Ensembl chr 1:18,948,425...18,982,354 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:72,696,868...72,752,480
Ensembl chr 5:72,701,136...72,752,989 		JBrowse link
G GIGYF2 GRB10 interacting GYF protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:118,720,668...118,883,299
Ensembl chr10:118,720,690...118,874,162 		JBrowse link
G MUC1 mucin 1, cell surface associated acts_upstream_of ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr20:8,641,701...8,646,739
Ensembl chr20:8,642,842...8,646,962 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:21731742) UniProt PMID:21731742 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPS27L ribosomal protein S27 like involved_in ISO (PMID:18056458) UniProt PMID:18056458 NCBI chr26:20,385,684...20,389,351 JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:3,779,561...3,793,496
Ensembl chr25:3,779,560...3,795,893 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TREX1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (PMID:23993650)
(PMID:18045533) 		MGI PMID:18045533 PMID:23993650 NCBI chr22:9,869,502...9,871,659 JBrowse link
G TRIAP1 TP53 regulated inhibitor of apoptosis 1 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:115,798,472...115,800,906
Ensembl chr11:115,798,862...115,800,840 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:28,131,774...28,222,501
Ensembl chr 9:28,131,769...28,219,134 		JBrowse link
mitotic G2 DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,852,411...31,875,968
Ensembl chr 7:31,853,490...31,875,189 		JBrowse link
G ATM ATM serine/threonine kinase involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:37178686) Ensembl
UniProt		 PMID:37178686 GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr14:79,277,238...79,732,996
Ensembl chr14:79,289,043...79,732,891 		JBrowse link
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr  X:129,358,759...129,406,293
Ensembl chr  X:129,358,862...129,403,352 		JBrowse link
G BRSK1 BR serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,888,813...47,915,019
Ensembl chr 6:47,888,920...47,917,920 		JBrowse link
G CDC14B cell division cycle 14B involved_in ISO (PMID:18662541) UniProt PMID:18662541 NCBI chr12:106,520,152...106,645,468
Ensembl chr12:106,572,015...106,633,316 		JBrowse link
G CDK1 cyclin dependent kinase 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:12937170) MGI
TreeGrafter		 PMID:12937170 GO_REF:0000118 NCBI chr 9:70,475,736...70,492,947 JBrowse link
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:68,367,591...68,382,000
Ensembl chr16:68,370,483...68,382,022 		JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:35,445,668...35,454,334
Ensembl chr17:35,445,223...35,454,342 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in ISO (PMID:20932473) UniProt PMID:20932473 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G CLSPN claspin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:97,096,529...97,132,305 JBrowse link
G CREB3L1 cAMP responsive element binding protein 3 like 1 involved_in ISO (PMID:37178686) UniProt PMID:37178686 NCBI chr 1:19,009,169...19,054,841
Ensembl chr 1:19,009,035...19,054,804 		JBrowse link
G CUNH10orf90 chromosome unknown C10orf90 homolog involved_in ISO (PMID:20154723) UniProt PMID:20154723 NCBI chr 9:119,049,797...119,290,121
Ensembl chr 9:119,050,676...119,136,762 		JBrowse link
G DONSON DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,598,341...58,627,279
Ensembl chr 2:58,598,967...58,609,316 		JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:17,418,078...17,485,320
Ensembl chr25:17,418,090...17,485,164 		JBrowse link
G FOXN3 forkhead box N3 involved_in ISO (PMID:9154802) UniProt PMID:9154802 NCBI chr24:66,832,760...67,103,637 JBrowse link
G FOXN3 forkhead box N3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:66,834,410...67,103,656 JBrowse link
G FOXO4 forkhead box O4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:60,893,711...60,901,134
Ensembl chr  X:60,893,526...60,902,844 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,272,247...3,300,370
Ensembl chr 6:3,288,407...3,298,464 		JBrowse link
G IER3 immediate early response 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:41,712,539...41,713,895
Ensembl chr17:41,712,528...41,714,126 		JBrowse link
G LOC103221857 E3 ubiquitin-protein ligase TRIM39 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:42,142,185...42,159,256
Ensembl chr17:42,142,073...42,158,764 		JBrowse link
G LOC103244593 cyclin-dependent kinase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:40,070,145...40,071,558 JBrowse link
G LOC103244924 cyclin-G1 ISO RGD PMID:9464250 RGD:2316029 NCBI chr23:65,709,759...65,716,913
Ensembl chr23:65,709,786...65,714,711 		JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase acts_upstream_of_or_within ISO (PMID:14614141) MGI PMID:14614141 NCBI chr22:51,616,840...51,626,232
Ensembl chr22:51,616,803...51,626,224 		JBrowse link
G MBTPS1 membrane bound transcription factor peptidase, site 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:37178686) Ensembl
UniProt		 PMID:37178686 GO_REF:0000107 NCBI chr 5:69,464,064...69,527,588
Ensembl chr 5:69,463,920...69,527,541 		JBrowse link
G MBTPS2 membrane bound transcription factor peptidase, site 2 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:37178686) Ensembl
UniProt		 PMID:37178686 GO_REF:0000107 NCBI chr  X:20,319,731...20,364,603
Ensembl chr  X:20,319,807...20,361,847 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G NBN nibrin involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G RINT1 RAD50 interactor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:74,454,916...74,491,057
Ensembl chr21:74,454,947...74,490,768 		JBrowse link
G SYF2 SYF2 pre-mRNA splicing factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:107,468,855...107,478,822
Ensembl chr20:107,468,940...107,479,036 		JBrowse link
G TAOK1 TAO kinase 1 involved_in ISO (PMID:17396146) UniProt PMID:17396146 NCBI chr16:23,145,629...23,291,694 JBrowse link
G TAOK2 TAO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,669,687...26,688,418
Ensembl chr 5:26,669,702...26,688,389 		JBrowse link
G TAOK3 TAO kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:113,485,871...113,717,213
Ensembl chr11:113,484,330...113,704,271 		JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:8,117,198...8,171,956 JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
mitotic intra-S DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:60,644,623...60,734,465
Ensembl chr10:60,644,635...60,734,475 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in ISO (PMID:11298456) UniProt PMID:11298456 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:42,949,059...42,957,323
Ensembl chr16:42,949,570...42,955,312 		JBrowse link
G EME2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,682,232...1,685,863
Ensembl chr 5:1,682,249...1,685,260 		JBrowse link
G FANCD2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:46,072,797...46,141,107
Ensembl chr22:46,072,761...46,140,713 		JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G LOC103243152 crossover junction endonuclease MUS81 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:53,418,865...53,421,128 JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G MSH2 mutS homolog 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:8,410,571...8,411,793 JBrowse link
G NEK11 NIMA related kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:58,884,879...59,178,575
Ensembl chr15:58,884,771...59,175,470 		JBrowse link
G RAD17 RAD17 checkpoint clamp loader component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:65,456,174...65,501,665
Ensembl chr 4:65,457,763...65,501,157 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:105,738,247...105,772,539
Ensembl chr11:105,738,867...105,772,002 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,194,859...17,214,671
Ensembl chr26:17,198,734...17,214,810 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
negative regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD4 bromodomain containing 4 involved_in ISO (PMID:23728299) UniProt PMID:23728299 NCBI chr 6:13,836,332...13,883,459
Ensembl chr 6:13,836,324...13,873,877 		JBrowse link
G CHEK2 checkpoint kinase 2 ISO RGD PMID:20637979 RGD:10401658 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
negative regulation of DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD44 CD44 molecule (IN blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:30,039,854...30,132,646
Ensembl chr 1:30,039,749...30,132,416 		JBrowse link
G CD74 CD74 molecule involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:53,008,802...53,022,953
Ensembl chr23:53,009,394...53,022,923 		JBrowse link
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:81,318,509...81,467,227
Ensembl chr 2:81,425,902...81,467,677 		JBrowse link
G DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,718,056...22,728,143
Ensembl chr25:22,718,284...22,728,074 		JBrowse link
G KDM1A lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G MARCHF7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:45,121,817...45,178,547
Ensembl chr10:45,121,538...45,177,271 		JBrowse link
G MDM2 MDM2 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,434,203...64,465,490
Ensembl chr11:64,434,261...64,469,890 		JBrowse link
G MIF macrophage migration inhibitory factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,000,837...7,001,700
Ensembl chr19:7,000,793...7,001,757 		JBrowse link
G PCBP4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:20817677) MGI PMID:20817677 NCBI chr22:13,326,069...13,336,474
Ensembl chr22:13,325,551...13,329,903 		JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:95,931,710...95,939,145
Ensembl chr  X:95,931,466...95,939,218 		JBrowse link
G PTTG1IP PTTG1 interacting protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:88,559,286...88,586,016
Ensembl chr 2:88,559,285...88,585,091 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:13,988,059...13,993,780
Ensembl chr 2:13,988,024...13,993,746 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:45,043,381...45,047,054
Ensembl chr 8:45,043,393...45,046,978 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G RIOX1 ribosomal oxygenase 1 acts_upstream_of_or_within ISO (PMID:35210392) UniProt PMID:35210392 NCBI chr24:50,744,200...50,746,925 JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:35210392) UniProt PMID:35210392 NCBI chr 7:86,476,101...86,528,146
Ensembl chr 7:86,481,726...86,527,779 		JBrowse link
G SGF29 SAGA complex associated factor 29 acts_upstream_of_or_within ISO (PMID:35210392) UniProt PMID:35210392 NCBI chr 5:26,399,760...26,439,616
Ensembl chr 5:26,399,677...26,439,530 		JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in ISO (PMID:20725033) UniProt PMID:20725033 NCBI chr 1:10,247,260...10,271,026 JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 1:10,248,141...10,259,688 JBrowse link
G OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:71,783,388...71,806,721
Ensembl chr24:71,795,047...71,803,732 		JBrowse link
G RNF169 ring finger protein 169 involved_in ISO (PMID:22492721), (PMID:22733822)
(PMID:22742833) 		UniProt PMID:22492721 PMID:22733822 PMID:22742833 NCBI chr 1:65,990,538...66,080,163 JBrowse link
G RNF169 ring finger protein 169 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:66,026,454...66,074,422 JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:39,040,178...39,042,384
Ensembl chr21:39,040,547...39,041,146 		JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,258,932...7,435,658
Ensembl chr12:7,256,648...7,312,734 		JBrowse link
G C1QBP complement C1q binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:4,843,202...4,850,639
Ensembl chr16:4,843,438...4,850,600 		JBrowse link
G CGAS cyclic GMP-AMP synthase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:1,697,446...1,723,626
Ensembl chr17:1,697,775...1,723,472 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:28512243) UniProt PMID:28512243 NCBI chr 2:55,982,259...56,047,023 JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25520194) MGI
TreeGrafter		 PMID:25520194 GO_REF:0000118 NCBI chr  X:13,321,304...13,352,368
Ensembl chr  X:13,321,527...13,342,478 		JBrowse link
G FBH1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G HELB DNA helicase B involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:61,972,061...62,008,532
Ensembl chr11:61,972,161...62,012,631 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KLHL15 kelch like family member 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:22,497,481...22,499,997
Ensembl chr  X:22,460,041...22,497,773
Ensembl chr  X:22,460,041...22,497,773 		JBrowse link
G KMT5A lysine methyltransferase 5A involved_in ISO (PMID:27338793) UniProt PMID:27338793 NCBI chr11:118,712,964...118,743,322
Ensembl chr11:118,723,029...118,743,325 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G MAGEF1 MAGE family member F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:4,706,254...4,707,932
Ensembl chr15:4,706,476...4,707,402 		JBrowse link
G PARPBP PARP1 binding protein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr11:97,367,270...97,437,248
Ensembl chr11:97,370,965...97,437,967 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G POLQ DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:59,336,506...59,448,609
Ensembl chr22:59,336,842...59,448,604 		JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:94,454,011...94,523,015
Ensembl chr  X:94,453,938...94,523,012 		JBrowse link
G RECQL5 RecQ like helicase 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:46,013,100...46,052,713
Ensembl chr16:46,013,092...46,056,167 		JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,845,751...36,937,040
Ensembl chr10:36,845,777...36,907,015 		JBrowse link
G RMI2 RecQ mediated genome instability 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:10,825,721...10,832,563
Ensembl chr 5:10,826,182...10,832,563 		JBrowse link
G SENP3 SUMO specific peptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:6,939,231...6,948,831
Ensembl chr16:6,940,281...6,949,221 		JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:32,265,882...32,381,411
Ensembl chr 2:32,265,788...32,381,395 		JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,565,105...44,652,926
Ensembl chr 9:44,564,792...44,605,562 		JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:61,817,386...61,823,423 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in ISO (PMID:30612738) UniProt PMID:30612738 NCBI chr20:7,811,275...7,829,782 JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:7,811,220...7,821,203 JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:106,912,338...106,936,183
Ensembl chr20:106,912,431...106,939,583 		JBrowse link
G CYREN cell cycle regulator of NHEJ involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:103,838,218...103,843,151
Ensembl chr21:103,838,988...103,842,620 		JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:19549901) UniProt PMID:19549901 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HSF1 heat shock transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,503,836...138,529,562
Ensembl chr 8:138,503,831...138,529,165 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:4,372,989...4,377,679
Ensembl chr 5:4,375,517...4,377,032 		JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) MGI PMID:19506022 NCBI chr22:45,757,414...45,763,690 JBrowse link
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr22:45,758,626...45,763,779 JBrowse link
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACKR3 atypical chemokine receptor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:122,558,998...122,573,747
Ensembl chr10:122,571,853...122,572,941 		JBrowse link
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:25,536,911...25,597,911
Ensembl chr16:25,538,131...25,597,695 		JBrowse link
G BCL2L1 BCL2 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:36,059,024...36,118,332
Ensembl chr 2:36,058,919...36,116,470 		JBrowse link
G BID BH3 interacting domain death agonist acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr19:1,952,320...1,982,804 JBrowse link
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:20,685,482...20,700,424
Ensembl chr 8:20,686,504...20,699,707 		JBrowse link
G CDKN2D cyclin dependent kinase inhibitor 2D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,579,648...9,582,249
Ensembl chr 6:9,579,470...9,582,101 		JBrowse link
G CLU clusterin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:25,704,441...25,721,789
Ensembl chr 8:25,703,257...25,721,789 		JBrowse link
G CXCL12 C-X-C motif chemokine ligand 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:40,005,580...40,020,513
Ensembl chr 9:40,011,439...40,020,494 		JBrowse link
G DDIAS DNA damage induced apoptosis suppressor involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:74,105,911...74,139,190
Ensembl chr 1:74,119,020...74,138,862 		JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in ISO (PMID:14561758) BHF-UCL PMID:14561758 NCBI chr 7:100,336,442...100,345,093
Ensembl chr 7:100,336,119...100,345,086 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:13,988,059...13,993,780
Ensembl chr 2:13,988,024...13,993,746 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:45,043,381...45,047,054
Ensembl chr 8:45,043,393...45,046,978 		JBrowse link
G TMEM161A transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,586,202...17,604,835
Ensembl chr 6:17,584,268...17,601,206 		JBrowse link
G TPT1 tumor protein, translationally-controlled 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:23,428,523...23,432,846
Ensembl chr 3:23,429,044...23,433,108 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,893,689...22,906,913
Ensembl chr12:22,894,886...22,896,847 		JBrowse link
G USP47 ubiquitin specific peptidase 47 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:52,872,514...52,989,111
Ensembl chr 1:52,875,465...52,988,505 		JBrowse link
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD5 ATPase family AAA domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:25,536,911...25,597,911
Ensembl chr16:25,538,131...25,597,695 		JBrowse link
G BCL2L12 BCL2 like 12 acts_upstream_of_or_within ISO (PMID:20837658) MGI PMID:20837658 NCBI chr 6:42,841,391...42,849,207 JBrowse link
G CD44 CD44 molecule (IN blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:30,039,854...30,132,646
Ensembl chr 1:30,039,749...30,132,416 		JBrowse link
G CD74 CD74 molecule involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:53,008,802...53,022,953
Ensembl chr23:53,009,394...53,022,923 		JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:39,268,461...39,273,833
Ensembl chr26:39,269,538...39,273,321 		JBrowse link
G KDM1A lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G MARCHF7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:45,121,817...45,178,547
Ensembl chr10:45,121,538...45,177,271 		JBrowse link
G MIF macrophage migration inhibitory factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:7,000,837...7,001,700
Ensembl chr19:7,000,793...7,001,757 		JBrowse link
G MUC1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chr20:8,641,701...8,646,739
Ensembl chr20:8,642,842...8,646,962 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G TRIAP1 TP53 regulated inhibitor of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,798,472...115,800,906
Ensembl chr11:115,798,862...115,800,840 		JBrowse link
G ZNF385A zinc finger protein 385A involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,483,974...50,507,178
Ensembl chr11:50,483,666...50,507,233 		JBrowse link
negative regulation of mitotic DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPP1R10 protein phosphatase 1 regulatory subunit 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:41,839,504...41,857,228
Ensembl chr17:41,839,833...41,858,470 		JBrowse link
negative regulation of protection from non-homologous end joining at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
G XRCC4 X-ray repair cross complementing 4 involved_in ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chr 4:77,182,569...77,468,786
Ensembl chr 4:77,182,793...77,468,775 		JBrowse link
negative regulation of telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RTEL1 regulator of telomere elongation helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:531,905...567,430
Ensembl chr 2:531,085...566,840 		JBrowse link
nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA2 BRCA2 DNA repair associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G BRIP1 BRCA1 interacting DNA helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:32,909,226...33,085,551
Ensembl chr16:32,910,693...33,082,587 		JBrowse link
G CETN2 centrin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:127,339,163...127,342,626
Ensembl chr  X:127,338,862...127,341,575 		JBrowse link
G COMMD1 copper metabolism domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:44,839,460...45,068,764
Ensembl chr14:44,839,542...45,068,586 		JBrowse link
G DCLRE1A DNA cross-link repair 1A acts_upstream_of_or_within ISO (PMID:10848582) MGI PMID:10848582 NCBI chr 9:106,713,857...106,735,268
Ensembl chr 9:106,713,895...106,731,999 		JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,071,011...18,096,660
Ensembl chr 1:18,071,383...18,096,595 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:7657672)
(PMID:22547097) 		Ensembl
UniProt
ComplexPortal		 PMID:7657672 PMID:22547097 GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:11790111), (PMID:14728600), (PMID:8797827)
(PMID:10413517), (PMID:22547097), (PMID:32034146) 		Ensembl
UniProt		 PMID:8797827 PMID:10413517 PMID:11790111 PMID:14728600 PMID:22547097 More... GO_REF:0000107 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:10022922) InterPro
MGI		 PMID:10022922 GO_REF:0000002 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:51,720,822...51,759,652
Ensembl chr26:51,725,017...51,759,413 		JBrowse link
G FANCC FA complementation group C acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:8704201) MGI
TreeGrafter		 PMID:8704201 GO_REF:0000118 NCBI chr12:107,780,087...107,991,828
Ensembl chr12:107,845,135...107,991,237 		JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:46,573,907...46,620,443
Ensembl chr 1:46,573,393...46,609,261 		JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 4:65,650,735...65,682,004 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr11:118,961,907...118,989,906
Ensembl chr11:118,967,974...118,989,391 		JBrowse link
G GTF2H4 general transcription factor IIH subunit 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr17:41,550,167...41,556,538
Ensembl chr17:41,550,287...41,556,054 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G HUS1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr24:37,922,347...38,161,467
Ensembl chr24:37,922,353...38,162,226 		JBrowse link
G NTHL1 nth like DNA glycosylase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:1,936,415...1,946,468
Ensembl chr 5:1,936,524...1,946,434 		JBrowse link
G OGG1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO (PMID:19506022) MGI PMID:19506022 NCBI chr22:45,757,414...45,763,690 JBrowse link
G OGG1 8-oxoguanine DNA glycosylase involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 Ensembl chr22:45,758,626...45,763,779 JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1508673) UniProt PMID:1508673 NCBI chr  X:23,184,921...23,492,836
Ensembl chr  X:23,185,046...23,492,992 		JBrowse link
G POLL DNA polymerase lambda involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:94,602,738...94,612,393
Ensembl chr 9:94,601,992...94,611,492 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:22431748) InterPro
MGI
Ensembl
UniProt		 PMID:22431748 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:22431748) UniProt
MGI
Ensembl
InterPro		 PMID:22431748 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G RPA1 replication protein A1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:9430682) UniProt PMID:9430682 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPA3 replication protein A3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:50,570,027...50,574,270
Ensembl chr21:50,570,751...50,574,216 		JBrowse link
G RPA4 replication protein A4 involved_in ISO (PMID:19996105) UniProt PMID:19996105 NCBI chr  X:85,323,910...85,325,997 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19596236) UniProt PMID:19596236 NCBI chr 5:3,281,468...3,308,296 JBrowse link
G TP53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
nucleotide-excision repair involved in interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
nucleotide-excision repair, DNA damage recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XPA XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIG4 DNA ligase 4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103235079 transcription factor Spi-B involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:43,446,466...43,490,377
Ensembl chr 6:43,460,747...43,480,112
Ensembl chr 6:43,460,747...43,480,112 		JBrowse link
G POLB DNA polymerase beta NOT|involved_in ISO (PMID:20227374) UniProt PMID:20227374 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:65,832,887...65,885,671 JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:127,966,879...128,030,442
Ensembl chr11:127,965,896...128,030,292 		JBrowse link
G POLK DNA polymerase kappa involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:69,842,887...69,948,285
Ensembl chr 4:69,872,752...69,948,249 		JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 Ensembl chr13:85,771,630...85,782,646 JBrowse link
photoreactive repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY2 cryptochrome circadian regulator 2 NOT|involved_in ISO (PMID:12627958) UniProt PMID:12627958 NCBI chr 1:19,459,734...19,498,807
Ensembl chr 1:19,472,231...19,498,790 		JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:64,650,781...64,844,078
Ensembl chr 1:64,647,177...64,844,097 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
positive regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:20,685,482...20,700,424
Ensembl chr 8:20,686,504...20,699,707 		JBrowse link
G TTI1 TELO2 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:25,717,089...25,768,128
Ensembl chr 2:25,717,118...25,768,610 		JBrowse link
positive regulation of DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD1 ankyrin repeat domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:84,248,133...84,257,276
Ensembl chr 9:84,247,241...84,257,170 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G ATR ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:48,048,785...48,173,120
Ensembl chr15:48,048,882...48,173,137 		JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:56,766,669...56,773,767
Ensembl chr16:56,767,186...56,773,464 		JBrowse link
G EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:15680327) Ensembl
MGI
InterPro		 PMID:15680327 GO_REF:0000002 GO_REF:0000107 NCBI chr17:64,058,992...64,082,187
Ensembl chr17:64,059,011...64,082,586 		JBrowse link
G HIC1 HIC ZBTB transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,687,560...1,697,888
Ensembl chr16:1,694,341...1,697,023 		JBrowse link
G ING4 inhibitor of growth family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,683,994...6,696,888
Ensembl chr11:6,684,897...6,696,852 		JBrowse link
G PLA2R1 phospholipase A2 receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:45,331,865...45,458,389
Ensembl chr10:45,341,383...45,440,840 		JBrowse link
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,861,182...19,865,628
Ensembl chr18:19,862,743...19,865,250 		JBrowse link
G PYHIN1 pyrin and HIN domain family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:4,967,123...5,006,172
Ensembl chr20:4,967,224...5,006,035 		JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,733,652...7,740,384
Ensembl chr16:7,732,921...7,740,325 		JBrowse link
G SPRED1 sprouty related EVH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:44,623,212...44,724,651
Ensembl chr26:44,628,802...44,723,791 		JBrowse link
G SPRED2 sprouty related EVH1 domain containing 2 involved_in ISO (PMID:20736167) BHF-UCL PMID:20736167 NCBI chr14:41,574,244...41,699,897
Ensembl chr14:41,640,758...41,700,009 		JBrowse link
G ZNF385A zinc finger protein 385A involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,483,974...50,507,178
Ensembl chr11:50,483,666...50,507,233 		JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:11,955,822...11,962,304
Ensembl chr28:11,955,521...11,962,195 		JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,852,411...31,875,968
Ensembl chr 7:31,853,490...31,875,189 		JBrowse link
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR5 actin related protein 5 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G ACTR8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:15,250,693...15,264,817
Ensembl chr22:15,252,097...15,264,706 		JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 involved_in ISO (PMID:17121854) UniProt PMID:17121854 NCBI chr 1:58,407,323...58,431,551
Ensembl chr 1:58,421,847...58,431,144 		JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:15,775,344...15,786,715
Ensembl chr 6:15,775,229...15,786,822 		JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr14:79,277,238...79,732,996
Ensembl chr14:79,289,043...79,732,891 		JBrowse link
G BRCA1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:19261748) UniProt PMID:17525340 PMID:19261748 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr  X:129,358,759...129,406,293
Ensembl chr  X:129,358,862...129,403,352 		JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr16:71,755,598...71,760,611
Ensembl chr16:71,755,627...71,760,632 		JBrowse link
G CCDC117 coiled-coil domain containing 117 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:11,650,223...11,665,354
Ensembl chr19:11,650,243...11,666,009 		JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in ISO (PMID:16255782) UniProt PMID:16255782 NCBI chr 6:28,415,448...28,424,463 JBrowse link
G CEBPG CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:28,421,000...28,421,452 JBrowse link
G DHX9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:46,485,602...46,534,046
Ensembl chr25:46,485,427...46,518,406 		JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:3,664,622...3,853,492
Ensembl chr21:3,666,339...3,853,239 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:7664335) UniProt PMID:7664335 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:16,717,300...17,001,893
Ensembl chr 2:16,717,291...17,001,703 		JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:104,720,487...104,840,902
Ensembl chr20:104,720,482...104,840,883 		JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:39,988,427...40,271,862
Ensembl chr13:40,001,261...40,272,592 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INO80B INO80 complex subunit B involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chr14:32,819,491...32,822,519
Ensembl chr14:32,819,575...32,822,380 		JBrowse link
G INO80C INO80 complex subunit C involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,282,846...45,311,885
Ensembl chr18:45,282,812...45,311,870 		JBrowse link
G INO80D INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,770,873...91,864,797
Ensembl chr10:91,781,563...91,843,787 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,520...45,811,768
Ensembl chr11:45,798,495...45,811,771 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G NFRKB nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:120,935,175...120,968,053
Ensembl chr 1:120,936,104...120,968,005 		JBrowse link
G NPAS2 neuronal PAS domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,529,048...4,705,167
Ensembl chr14:4,612,225...4,705,419 		JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr 9:41,867,776...42,006,845
Ensembl chr 9:41,869,061...42,005,789 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:32,936,600...32,953,635
Ensembl chr 2:32,948,196...32,953,991 		JBrowse link
G RNF168 ring finger protein 168 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr15:90,702,740...90,735,279
Ensembl chr15:90,702,765...90,737,687 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TFPT TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:46,782,622...46,790,461
Ensembl chr 6:46,781,471...46,790,804 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,354,911...4,381,762
Ensembl chr11:4,355,053...4,381,273 		JBrowse link
G TMEM161A transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,586,202...17,604,835
Ensembl chr 6:17,584,268...17,601,206 		JBrowse link
G TRIM28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,820,188...50,826,376
Ensembl chr 6:50,819,833...50,827,010 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784 NCBI chr11:88,810,505...88,842,895 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 8:44,167,214...44,218,074 JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
G YY1 YY1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGER advanced glycosylation end-product specific receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,847,343...39,851,288
Ensembl chr17:39,847,759...39,851,127 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G DDX11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:9,260,206...9,290,308
Ensembl chr11:9,260,239...9,291,162 		JBrowse link
G FMN2 formin 2 involved_in ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr25:77,187,572...77,585,773 JBrowse link
G FMN2 formin 2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:77,188,304...77,432,384 JBrowse link
G FOXM1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,920,903...2,941,011
Ensembl chr11:2,920,663...2,940,823 		JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in ISO (PMID:29125140), (PMID:33115731) UniProt PMID:29125140 PMID:33115731 NCBI chr17:1,781,156...1,783,344
Ensembl chr17:1,781,026...1,783,111 		JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr 9:122,089,768...122,376,320 JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:122,326,474...122,377,887 JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G OOEP oocyte expressed protein involved_in ISO (PMID:29125140) UniProt PMID:29125140 NCBI chr17:1,775,192...1,777,214
Ensembl chr17:1,775,955...1,776,982 		JBrowse link
G RAD50 RAD50 double strand break repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:88,497,787...88,573,966
Ensembl chr 4:88,499,373...88,576,983 		JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:93,919,373...93,983,499
Ensembl chr 9:93,931,456...93,980,297 		JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,380,207...43,872,077
Ensembl chr 8:43,380,244...43,872,937 		JBrowse link
G SPIRE1 spire type actin nucleation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:70,995,611...71,178,844
Ensembl chr18:70,995,390...71,178,538 		JBrowse link
G SPIRE2 spire type actin nucleation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:75,160,728...75,200,417
Ensembl chr 5:75,177,082...75,201,581 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) ComplexPortal PMID:16129784 NCBI chr11:88,810,505...88,842,895 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 involved_in ISO (PMID:16129784) ComplexPortal PMID:16129784 NCBI chr 8:44,167,214...44,218,074 JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in ISO (PMID:31453335), (PMID:32352380), (PMID:32374261), (PMID:32744506) ARUK-UCL PMID:31453335 PMID:32352380 PMID:32374261 PMID:32744506 NCBI chr28:12,777,291...12,802,385 JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr28:16,195,676...16,197,161
Ensembl chr12:52,426,752...52,427,879 		JBrowse link
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR2 actin related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,740,432...41,780,045
Ensembl chr14:41,739,968...41,779,964 		JBrowse link
G ARID2 AT-rich interaction domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:41,933,650...42,117,495
Ensembl chr11:42,028,083...42,118,892 		JBrowse link
G BLM BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:25520194) MGI PMID:25520194 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRD8 bromodomain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:40,808,706...40,848,696
Ensembl chr23:40,827,739...40,849,030 		JBrowse link
G CREBBP CREB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:3,415,548...3,570,030
Ensembl chr 5:3,415,412...3,540,943 		JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:88,570,281...88,577,747
Ensembl chr20:88,570,341...88,577,306 		JBrowse link
G EPC1 enhancer of polycomb homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,586,402...31,698,876
Ensembl chr 9:31,585,246...31,665,592 		JBrowse link
G EPC2 enhancer of polycomb homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:34,046,966...34,190,829
Ensembl chr10:34,047,028...34,191,956 		JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25520194) MGI
TreeGrafter		 PMID:25520194 GO_REF:0000118 NCBI chr  X:13,321,304...13,352,368
Ensembl chr  X:13,321,527...13,342,478 		JBrowse link
G FUS FUS RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:27,870,456...27,881,563
Ensembl chr 5:27,870,330...27,882,145 		JBrowse link
G HDGFL2 HDGF like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,200,031...4,230,941
Ensembl chr 6:4,200,077...4,230,731 		JBrowse link
G HELQ helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,799,072...31,846,942
Ensembl chr 7:31,797,747...31,846,760 		JBrowse link
G ING3 inhibitor of growth family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:89,772,546...89,802,250
Ensembl chr21:89,772,528...89,802,244 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KHDC3L KH domain containing 3 like, subcortical maternal complex member involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,781,156...1,783,344
Ensembl chr17:1,781,026...1,783,111 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G LOC103239431 E1A-binding protein p400 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr11:127,335,371...127,461,564
Ensembl chr11:127,335,492...127,461,796 		JBrowse link
G MBTD1 mbt domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:42,085,106...42,169,856
Ensembl chr16:42,084,397...42,163,828 		JBrowse link
G MEAF6 MYST/Esa1 associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:95,359,469...95,380,547
Ensembl chr20:95,359,515...95,379,259 		JBrowse link
G MORF4L1 mortality factor 4 like 1 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr26:4,500,848...4,520,830 JBrowse link
G MORF4L2 mortality factor 4 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:91,566,051...91,579,084
Ensembl chr  X:91,566,712...91,567,575 		JBrowse link
G MRGBP MRG domain binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,428,152...1,433,228
Ensembl chr 2:1,428,796...1,433,148 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G OOEP oocyte expressed protein involved_in ISO (PMID:29955025) UniProt PMID:29955025 NCBI chr17:1,775,192...1,777,214
Ensembl chr17:1,775,955...1,776,982 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098 PMID:30356214 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PELI1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:42,864,857...42,930,315
Ensembl chr14:42,864,897...42,930,394 		JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 involved_in ISO (PMID:32832608) UniProt PMID:32832608 NCBI chr 6:3,768,100...3,797,377 JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:3,768,179...3,797,859 JBrowse link
G PRMT1 protein arginine methyltransferase 1 involved_in ISO (PMID:15741314), (PMID:29651020) UniProt PMID:15741314 PMID:29651020 NCBI chr 6:42,854,873...42,863,113
Ensembl chr 6:42,854,918...42,863,014 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RNF126 ring finger protein 126 involved_in ISO (PMID:36563124) UniProt PMID:36563124 NCBI chr 6:392,717...409,139 JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,009,114...35,040,518
Ensembl chr 4:35,009,076...35,042,632 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,371,781...52,408,923
Ensembl chr11:52,372,375...52,389,284 		JBrowse link
G TRRAP transformation/transcription domain associated protein involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chr28:14,154,962...14,289,110
Ensembl chr28:14,154,960...14,286,512 		JBrowse link
G VPS72 vacuolar protein sorting 72 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,498,627...12,513,838
Ensembl chr20:12,498,644...12,514,343 		JBrowse link
G WAS WASP actin nucleation promoting factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:45,809,418...45,817,165
Ensembl chr  X:45,809,189...45,817,667 		JBrowse link
G WDR48 WD repeat domain 48 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:319,589...366,265
Ensembl chr15:319,810...366,246 		JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
G YEATS4 YEATS domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,989,143...65,017,837
Ensembl chr11:64,989,152...65,017,938 		JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYREN cell cycle regulator of NHEJ involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:103,838,218...103,843,151
Ensembl chr21:103,838,988...103,842,620 		JBrowse link
G FH fumarate hydratase involved_in ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr25:78,576,931...78,599,998
Ensembl chr25:78,575,300...78,599,972 		JBrowse link
G KMT5B lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,308,565...6,367,272
Ensembl chr 1:6,308,742...6,367,393 		JBrowse link
G KMT5C lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,942,100...47,950,364
Ensembl chr 6:47,944,197...47,949,693 		JBrowse link
G LOC103248265 lysine-specific demethylase 4D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:86,190,515...86,215,061
Ensembl chr 1:86,212,761...86,214,490 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,310,885...13,316,807
Ensembl chr22:13,310,938...13,320,680 		JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:43,018,763...43,025,506
Ensembl chr 6:43,018,807...43,025,292 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,845,751...36,937,040
Ensembl chr10:36,845,777...36,907,015 		JBrowse link
G SETMAR SET domain and mariner transposase fusion gene involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:40,389,390...40,403,917
Ensembl chr22:40,389,485...40,403,898 		JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:32,265,882...32,381,411
Ensembl chr 2:32,265,788...32,381,395 		JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:44,565,105...44,652,926
Ensembl chr 9:44,564,792...44,605,562 		JBrowse link
G SHLD3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893 NCBI chr 4:61,817,386...61,823,423 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:61,921,477...62,069,187
Ensembl chr18:61,921,124...62,070,878 		JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr15:70,266,267...70,332,079
Ensembl chr15:70,266,601...70,332,824 		JBrowse link
G WRAP53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,065,531...7,085,590
Ensembl chr16:7,066,333...7,085,625 		JBrowse link
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBH1 F-box DNA helicase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G NACC2 NACC family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,104,649...2,192,283
Ensembl chr12:2,148,312...2,192,432 		JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 acts_upstream_of_or_within ISO (PMID:16816390) MGI PMID:16816390 NCBI chr 6:3,768,100...3,797,377 JBrowse link
G PIAS4 protein inhibitor of activated STAT 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 Ensembl chr 6:3,768,179...3,797,859 JBrowse link
G PLSCR1 phospholipid scramblase 1 acts_upstream_of_or_within ISO (PMID:12509439) MGI PMID:12509439 NCBI chr15:44,160,017...44,189,056
Ensembl chr15:44,160,200...44,188,195 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G RPS3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:66,629,895...66,636,462
Ensembl chr 1:66,629,954...66,635,344 		JBrowse link
G SKIL SKI like proto-oncogene acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:19,022,167...19,059,117
Ensembl chr15:19,022,017...19,057,004 		JBrowse link
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KNL1 kinetochore scaffold 1 acts_upstream_of_or_within ISO (PMID:31197172) MGI PMID:31197172 NCBI chr26:42,342,741...42,409,466 JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,733,652...7,740,384
Ensembl chr16:7,732,921...7,740,325 		JBrowse link
G STEAP3 STEAP3 metalloreductase acts_upstream_of_or_within ISO (PMID:18617898) MGI PMID:18617898 NCBI chr10:11,055,446...11,097,131
Ensembl chr10:11,053,981...11,075,452 		JBrowse link
G TP73 tumor protein p73 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:127,958,002...128,035,792
Ensembl chr20:127,958,809...128,013,691 		JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,735,091...32,741,200
Ensembl chr19:32,735,406...32,740,817 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G PRKCG protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:46,574,560...46,600,329
Ensembl chr 6:46,575,439...46,600,364 		JBrowse link
positive regulation of mitotic DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP3K20 mitogen-activated protein kinase kinase kinase 20 involved_in ISO (PMID:15342622) UniProt PMID:15342622 NCBI chr10:58,573,303...58,764,759 JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WHR1 winged helix repair factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:40,042,264...40,049,983
Ensembl chr17:40,009,273...40,049,936 		JBrowse link
positive regulation of telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR5 actin related protein 5 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G ACTR8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:15,250,693...15,264,817
Ensembl chr22:15,252,097...15,264,706 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INO80B INO80 complex subunit B involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chr14:32,819,491...32,822,519
Ensembl chr14:32,819,575...32,822,380 		JBrowse link
G INO80C INO80 complex subunit C involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,282,846...45,311,885
Ensembl chr18:45,282,812...45,311,870 		JBrowse link
G INO80D INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,770,873...91,864,797
Ensembl chr10:91,781,563...91,843,787 		JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,520...45,811,768
Ensembl chr11:45,798,495...45,811,771 		JBrowse link
G NFRKB nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:120,935,175...120,968,053
Ensembl chr 1:120,936,104...120,968,005 		JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G TFPT TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:46,782,622...46,790,461
Ensembl chr 6:46,781,471...46,790,804 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G YY1 YY1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
postreplication repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA1 BRCA1 DNA repair associated involved_in ISO (PMID:17349954) HGNC-UCL PMID:17349954 NCBI chr16:63,162,827...63,243,928 JBrowse link
G MSH2 mutS homolog 2 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G POLH DNA polymerase eta involved_in
acts_upstream_of_or_within 		IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr17:28,548,454...28,585,232
Ensembl chr17:28,549,623...28,585,206 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr22:44,878,015...44,960,610
Ensembl chr22:44,875,292...44,960,089 		JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:37,180,011...37,199,250
Ensembl chr23:37,180,424...37,198,064 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N acts_upstream_of ISO (PMID:17349954) HGNC-UCL PMID:17349954 NCBI chr11:88,810,505...88,842,895 JBrowse link
protection from non-homologous end joining at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACD ACD shelterin complex subunit and telomerase recruitment factor involved_in ISO (PMID:18185984) BHF-UCL PMID:18185984 NCBI chr 5:59,783,842...59,787,117
Ensembl chr 5:59,784,178...59,787,032 		JBrowse link
G DCLRE1B DNA cross-link repair 1B involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:19,750,106...19,757,190
Ensembl chr20:19,748,898...19,756,901 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G TERF2 telomeric repeat binding factor 2 involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:58,019,422...58,051,819
Ensembl chr 5:58,019,468...58,050,802 		JBrowse link
G TERF2IP TERF2 interacting protein involved_in
NOT|involved_in 		IEA
ISO 		(PMID:20339076), (PMID:20622869) Ensembl
TreeGrafter
UniProt		 PMID:20339076 PMID:20622869 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:61,133,028...61,142,713
Ensembl chr 5:61,133,173...61,141,896 		JBrowse link
protein-DNA covalent cross-linking repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:32,909,226...33,085,551
Ensembl chr16:32,910,693...33,082,587 		JBrowse link
G FAM111A FAM111 trypsin like peptidase A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,405,991...14,412,170 JBrowse link
G GCNA germ cell nuclear acidic peptidase involved_in ISO (PMID:30914427) UniProt PMID:30914427 NCBI chr  X:61,395,585...61,428,773 JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr22:51,759,776...51,785,902
Ensembl chr22:51,759,715...51,785,987 		JBrowse link
G SPRTN SprT-like N-terminal domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:68,599,377...68,620,568
Ensembl chr25:68,599,780...68,620,621 		JBrowse link
G TEX264 testis expressed 264, ER-phagy receptor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:13,008,961...13,042,296
Ensembl chr22:13,012,079...13,041,993 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G VCPIP1 valosin containing protein interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:62,506,541...62,546,238
Ensembl chr 8:62,510,808...62,546,229 		JBrowse link
pyrimidine dimer repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDB2 damage specific DNA binding protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:18,071,011...18,096,660
Ensembl chr 1:18,071,383...18,096,595 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G POLB DNA polymerase beta ISO RGD PMID:12388548 RGD:633643 NCBI chr 8:40,332,165...40,368,065
Ensembl chr 8:40,332,208...40,372,582 		JBrowse link
G POLH DNA polymerase eta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:28,548,454...28,585,232
Ensembl chr17:28,549,623...28,585,206 		JBrowse link
pyrimidine dimer repair by nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chr 2:83,296,811...83,303,581 JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
recombinational interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:32,137,983...32,181,187
Ensembl chr 2:32,138,173...32,181,179 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBH1 F-box DNA helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G HROB homologous recombination factor with OB-fold involved_in IEA InterPro GO_REF:0000002 NCBI chr16:62,230,588...62,251,090
Ensembl chr16:62,230,261...62,250,734 		JBrowse link
G RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:2,941,055...2,955,421
Ensembl chr11:2,941,001...2,955,438 		JBrowse link
G ZGRF1 zinc finger GRF-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:60,322,709...60,407,026
Ensembl chr 7:60,322,750...60,403,124 		JBrowse link
regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 involved_in ISO (PMID:34102106) UniProt PMID:34102106 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:102,200,822...102,306,165
Ensembl chr11:102,204,224...102,306,182 		JBrowse link
G CUL4A cullin 4A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G ETAA1 ETAA1 activator of ATR kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:39,658,974...39,673,093
Ensembl chr14:39,659,873...39,673,259 		JBrowse link
G FEM1B fem-1 homolog B involved_in ISO (PMID:19330022) UniProt PMID:19330022 NCBI chr26:15,183,965...15,201,394 JBrowse link
G NEK1 NIMA related kinase 1 involved_in ISO (PMID:18843199) CACAO PMID:18843199 NCBI chr 7:115,621,917...115,819,349
Ensembl chr 7:115,621,916...115,819,291 		JBrowse link
G RFWD3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494 		JBrowse link
G RNASEH2B ribonuclease H2 subunit B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:28,791,490...28,856,542
Ensembl chr 3:28,791,748...28,841,733 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:21504906) UniProt PMID:21504906 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G WDR76 WD repeat domain 76 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:39,178,407...39,222,005
Ensembl chr26:39,176,535...39,223,993 		JBrowse link
regulation of DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COPS3 COP9 signalosome subunit 3 involved_in ISO (PMID:15861129) UniProt PMID:15861129 NCBI chr16:16,280,490...16,331,538 JBrowse link
G COPS3 COP9 signalosome subunit 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:16,293,120...16,331,502 JBrowse link
G KMT5A lysine methyltransferase 5A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:118,712,964...118,743,322
Ensembl chr11:118,723,029...118,743,325 		JBrowse link
G NPM1 nucleophosmin 1 acts_upstream_of_or_within ISO (PMID:16199867) MGI PMID:16199867 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G SMYD2 SET and MYND domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:15,236,773...15,293,154
Ensembl chr25:15,235,653...15,293,153 		JBrowse link
G TP53 tumor protein p53 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:92,605,495...92,648,110
Ensembl chr20:92,605,309...92,648,114 		JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELB DNA helicase B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,972,061...62,008,532
Ensembl chr11:61,972,161...62,012,631 		JBrowse link
regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTL6A actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,838,609...9,863,439
Ensembl chr15:9,837,274...9,863,430 		JBrowse link
G ACTR5 actin related protein 5 involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G ACTR8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:15,250,693...15,264,817
Ensembl chr22:15,252,097...15,264,706 		JBrowse link
G CDK9 cyclin dependent kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502 		JBrowse link
G CUNH11orf54 chromosome unknown C11orf54 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:84,993,668...85,014,743
Ensembl chr 1:84,999,541...85,013,322 		JBrowse link
G IER3 immediate early response 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:41,712,539...41,713,895
Ensembl chr17:41,712,528...41,714,126 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G INO80B INO80 complex subunit B involved_in ISO (PMID:23979016) ComplexPortal PMID:23979016 NCBI chr14:32,819,491...32,822,519
Ensembl chr14:32,819,575...32,822,380 		JBrowse link
G INO80C INO80 complex subunit C involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:45,282,846...45,311,885
Ensembl chr18:45,282,812...45,311,870 		JBrowse link
G INO80D INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:91,770,873...91,864,797
Ensembl chr10:91,781,563...91,843,787 		JBrowse link
G MCRS1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,520...45,811,768
Ensembl chr11:45,798,495...45,811,771 		JBrowse link
G NFRKB nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:120,935,175...120,968,053
Ensembl chr 1:120,936,104...120,968,005 		JBrowse link
G PARG poly(ADP-ribose) glycohydrolase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 9:41,867,776...42,006,845
Ensembl chr 9:41,869,061...42,005,789 		JBrowse link
G RIOX1 ribosomal oxygenase 1 involved_in ISO (PMID:35210392) UniProt PMID:35210392 NCBI chr24:50,744,200...50,746,925 JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,887,374...52,967,728
Ensembl chr22:52,924,819...52,967,830 		JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,227,982...42,247,204
Ensembl chr 6:42,227,821...42,249,707 		JBrowse link
G SETD7 SET domain containing 7, histone lysine methyltransferase involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:35210392) Ensembl
UniProt		 PMID:35210392 GO_REF:0000107 NCBI chr 7:86,476,101...86,528,146
Ensembl chr 7:86,481,726...86,527,779 		JBrowse link
G SGF29 SAGA complex associated factor 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,399,760...26,439,616
Ensembl chr 5:26,399,677...26,439,530 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G SUV39H1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr  X:45,820,114...45,834,727
Ensembl chr  X:45,822,453...45,834,917 		JBrowse link
G TFPT TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:46,782,622...46,790,461
Ensembl chr 6:46,781,471...46,790,804 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G USP1 ubiquitin specific peptidase 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr20:70,602,300...70,617,280
Ensembl chr20:70,603,056...70,614,069 		JBrowse link
G YY1 YY1 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEK DEK proto-oncogene acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:21653549) MGI
TreeGrafter		 PMID:21653549 GO_REF:0000118 NCBI chr17:53,879,902...53,919,533 JBrowse link
G PML PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931 		JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,573,636...26,585,814
Ensembl chr 5:26,573,638...26,585,849 		JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 involved_in ISO (PMID:18614045) ComplexPortal PMID:18614045
G PPP4R3B protein phosphatase 4 regulatory subunit 3B involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:51,285,538...51,356,676
Ensembl chr14:51,285,994...51,355,142 		JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 involved_in ISO (PMID:15665856) UniProt PMID:15665856 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G FIGNL1 fidgetin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:8,351,116...8,357,841
Ensembl chr21:8,354,641...8,356,665 		JBrowse link
G KDM1A lysine demethylase 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G LOC103232044 ubiquitin carboxyl-terminal hydrolase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:51,539,955...51,545,552
Ensembl chr  X:51,542,091...51,544,223 		JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,573,636...26,585,814
Ensembl chr 5:26,573,638...26,585,849 		JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 involved_in ISO (PMID:20154705) UniProt PMID:20154705
G RAD51 RAD51 recombinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RPA2 replication protein A2 involved_in ISO (PMID:20154705) UniProt PMID:20154705 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:531,905...567,430
Ensembl chr 2:531,085...566,840 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:8,421,178...8,567,221
Ensembl chr22:8,420,960...8,567,201 		JBrowse link
G SHLD2 shieldin complex subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:44,565,105...44,652,926
Ensembl chr 9:44,564,792...44,605,562 		JBrowse link
G SIRT6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SPIDR scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,380,207...43,872,077
Ensembl chr 8:43,380,244...43,872,937 		JBrowse link
G TERF2IP TERF2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:61,133,028...61,142,713
Ensembl chr 5:61,133,173...61,141,896 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:28,947,414...29,044,215
Ensembl chr 8:28,947,423...28,991,634 		JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998
G ZNF365 zinc finger protein 365 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:68,872,683...68,900,911
Ensembl chr 9:68,871,827...68,900,724 		JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr14:41,740,432...41,780,045
Ensembl chr14:41,739,968...41,779,964 		JBrowse link
G DEK DEK proto-oncogene acts_upstream_of_or_within ISO (PMID:21653549) MGI PMID:21653549 NCBI chr17:53,879,902...53,919,533 JBrowse link
G LOC103232044 ubiquitin carboxyl-terminal hydrolase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:51,539,955...51,545,552
Ensembl chr  X:51,542,091...51,544,223 		JBrowse link
G MRNIP MRN complex interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:81,571,083...81,590,906
Ensembl chr23:81,571,199...81,590,815 		JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr27:46,787,325...46,896,898
Ensembl chr27:46,787,154...46,867,792 		JBrowse link
G POT1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:93,572,139...93,688,374
Ensembl chr21:93,571,272...93,655,869 		JBrowse link
G SHLD1 shieldin complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:32,265,882...32,381,411
Ensembl chr 2:32,265,788...32,381,395 		JBrowse link
G USP51 ubiquitin specific peptidase 51 involved_in ISO (PMID:27083998) UniProt PMID:27083998
G WAS WASP actin nucleation promoting factor NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:45,809,418...45,817,165
Ensembl chr  X:45,809,189...45,817,667 		JBrowse link
regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPK heterogeneous nuclear ribonucleoprotein K acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G LOC103230439 heterogeneous nuclear ribonucleoprotein K-like acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:44,517,612...44,519,703 JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:55,874,043...55,906,739
Ensembl chr16:55,874,072...55,907,281 		JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL4A cullin 4A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G HMGB1 high mobility group box 1 involved_in ISO (PMID:18650382) UniProt PMID:18650382 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:43,508,888...43,548,411
Ensembl chr16:43,510,483...43,548,517 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:25378300) MGI PMID:25378300 NCBI chr25:3,350,798...3,405,040 JBrowse link
regulation of transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
replication-born double-strand break repair via sister chromatid exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:25597246) MGI PMID:25597246 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G FANCB FA complementation group B acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25520194) MGI
TreeGrafter		 PMID:25520194 GO_REF:0000118 NCBI chr  X:13,321,304...13,352,368
Ensembl chr  X:13,321,527...13,342,478 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:35,748,112...35,940,075
Ensembl chr 4:35,829,386...35,941,271 		JBrowse link
G RAD21 RAD21 cohesin complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:111,486,356...111,515,641
Ensembl chr 8:111,486,048...111,507,729 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:55,299,061...55,335,200
Ensembl chr 2:55,307,711...55,333,874 		JBrowse link
G RAD51 RAD51 recombinase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RECQL5 RecQ like helicase 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:46,013,100...46,052,713
Ensembl chr16:46,013,092...46,056,167 		JBrowse link
signal transduction in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:7,258,932...7,435,658
Ensembl chr12:7,256,648...7,312,734 		JBrowse link
G ATAD5 ATPase family AAA domain containing 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:25,536,911...25,597,911
Ensembl chr16:25,538,131...25,597,695 		JBrowse link
G ATM ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,653,208...99,786,889
Ensembl chr 1:99,653,139...99,791,520 		JBrowse link
G CASP9 caspase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:116,772,819...116,798,402
Ensembl chr20:116,772,155...116,798,930 		JBrowse link
G CHEK1 checkpoint kinase 1 involved_in ISO (PMID:16963448) UniProt
RGD		 PMID:11278490 PMID:16963448 RGD:2316109 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G CHEK2 checkpoint kinase 2 acts_upstream_of_or_within
involved_in 		ISO (PMID:14744935)
(PMID:11298456) 		MGI
UniProt		 PMID:11298456 PMID:14744935 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G CRY1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:102,200,822...102,306,165
Ensembl chr11:102,204,224...102,306,182 		JBrowse link
G GADD45A growth arrest and DNA damage inducible alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:65,422,668...65,425,845
Ensembl chr20:65,422,451...65,425,840 		JBrowse link
G GRB2 growth factor receptor bound protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:46,264,818...46,346,426
Ensembl chr16:46,264,825...46,347,156 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:36,012,164...36,095,542
Ensembl chr17:36,014,454...36,095,138 		JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,536,471...26,545,666
Ensembl chr 5:26,536,532...26,546,461 		JBrowse link
G RNF8 ring finger protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:34,754,186...34,787,676
Ensembl chr17:34,751,945...34,787,632 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,217,402...45,222,996
Ensembl chr11:45,219,027...45,222,017 		JBrowse link
single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLF aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:38,539,398...38,636,666
Ensembl chr14:38,540,084...38,636,569 		JBrowse link
G APTX aprataxin involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:47,239,094...47,346,528
Ensembl chr12:47,258,798...47,287,102 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G LIG4 DNA ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:86,576,200...86,587,097
Ensembl chr 3:86,577,304...86,580,039 		JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:123,408,582...123,462,475
Ensembl chr 7:123,409,363...123,462,411 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:17600775)
(PMID:17914460), (PMID:17948061)
(PMID:15811850) 		UniProt
MGI		 PMID:15811850 PMID:17600775 PMID:17914460 PMID:17948061 NCBI chr24:67,672,178...67,762,340 JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:67,679,206...67,762,941 JBrowse link
G TNP1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:102,703,116...102,703,747
Ensembl chr10:102,703,325...102,703,691 		JBrowse link
G XNDC1N XRCC1 N-terminal domain containing 1, N-terminal like involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:63,096,260...63,132,158 JBrowse link
G XRCC1 X-ray repair cross complementing 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 6:37,062,149...37,095,138
Ensembl chr 6:37,060,439...37,095,094 		JBrowse link
telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:51,905,085...51,910,209
Ensembl chr11:51,905,115...51,909,907 		JBrowse link
G NBN nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028 		JBrowse link
G PPP1CA protein phosphatase 1 catalytic subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,862,536...6,866,212
Ensembl chr 1:6,862,540...6,865,855 		JBrowse link
G RIF1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,845,751...36,937,040
Ensembl chr10:36,845,777...36,907,015 		JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:531,905...567,430
Ensembl chr 2:531,085...566,840 		JBrowse link
telomere maintenance via base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO (PMID:24703901) BHF-UCL PMID:24703901 NCBI chr29:20,978,878...20,981,393 JBrowse link
transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELOF1 elongation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:10,473,519...10,479,856
Ensembl chr 6:10,474,208...10,474,802 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in
acts_upstream_of_or_within 		IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chr 2:83,296,811...83,303,581 JBrowse link
G LOC103215829 DNA excision repair protein ERCC-6 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G POLR2I RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:31,020,107...31,021,717
Ensembl chr 6:31,020,151...31,021,237 		JBrowse link
G RBX1 ring-box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,470,137...8,540,736
Ensembl chr 5:8,469,230...8,540,770 		JBrowse link
G UVSSA UV stimulated scaffold protein A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:47,378,310...47,418,861
Ensembl chr27:47,378,770...47,417,559 		JBrowse link
G WHR1 winged helix repair factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:40,042,264...40,049,983
Ensembl chr17:40,009,273...40,049,936 		JBrowse link
G XAB2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,105,353...7,116,063
Ensembl chr 6:7,104,785...7,116,020 		JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:17,418,078...17,485,320
Ensembl chr25:17,418,090...17,485,164 		JBrowse link
G FAAP20 FA core complex associated protein 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:129,357,043...129,373,409
Ensembl chr20:129,357,089...129,362,518 		JBrowse link
G PARP10 poly(ADP-ribose) polymerase family member 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,187,635...138,195,541
Ensembl chr 8:138,187,562...138,195,504 		JBrowse link
G PCLAF PCNA clamp associated factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:19,140,901...19,155,488
Ensembl chr26:19,140,843...19,155,730 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:32,936,600...32,953,635
Ensembl chr 2:32,948,196...32,953,991 		JBrowse link
G POLI DNA polymerase iota acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:17114294) MGI
TreeGrafter		 PMID:17114294 GO_REF:0000118 NCBI chr18:26,644,901...26,670,911
Ensembl chr18:26,641,245...26,670,893 		JBrowse link
G POLN DNA polymerase nu involved_in ISO (PMID:20102227)
(PMID:19908865) 		UniProt PMID:19908865 PMID:20102227 NCBI chr27:46,523,052...46,694,474 JBrowse link
G POLN DNA polymerase nu involved_in IEA Ensembl GO_REF:0000107 Ensembl chr27:46,568,587...46,690,968 JBrowse link
G PRIMPOL primase and DNA directed polymerase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:130,611,105...130,653,614
Ensembl chr 7:130,611,133...130,657,450 		JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr13:62,400,241...62,586,645
Ensembl chr13:62,399,745...62,586,647 		JBrowse link
G SPRTN SprT-like N-terminal domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:68,599,377...68,620,568
Ensembl chr25:68,599,780...68,620,621 		JBrowse link
G VCP valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G ZBTB1 zinc finger and BTB domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:41,712,721...41,738,853
Ensembl chr24:41,712,114...41,740,654 		JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR5 actin related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,983,536...25,008,225
Ensembl chr 2:24,980,945...25,007,881 		JBrowse link
G CUL4B cullin 4B involved_in IEA Ensembl GO_REF:0000107
G DDB1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:12,508,712...12,543,127
Ensembl chr 1:12,508,443...12,544,913 		JBrowse link
G DDB2 damage specific DNA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,071,011...18,096,660
Ensembl chr 1:18,071,383...18,096,595 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G HIST3H2A histone cluster 3, H2a involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:1,279,465...1,280,351
Ensembl chr25:1,279,511...1,279,900 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:41,878,648...42,017,526
Ensembl chr26:41,898,723...42,017,736 		JBrowse link
G MC1R melanocortin 1 receptor involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:75,242,523...75,243,473 JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein acts_upstream_of_or_within ISO (PMID:22431748) MGI PMID:22431748 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein acts_upstream_of_or_within ISO (PMID:22431748) MGI PMID:22431748 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G XPA XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:41,711,872...41,735,024
Ensembl chr12:41,711,943...41,725,698 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19826
    response to stimulus 8888
      response to stress 4121
        cellular response to stress 1989
          DNA damage response 848
            DNA repair + 529
            DNA repair-dependent chromatin remodeling 24
            SOS response 0
            broken chromosome clustering 2
            intrinsic apoptotic signaling pathway in response to DNA damage + 116
            signal transduction in response to DNA damage + 187
            telomere maintenance in response to DNA damage + 28
paths to the root