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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular component disassembly involved in execution phase of apoptosis
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Accession:GO:0006921 term browser browse the term
Definition:The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis.
Synonyms:narrow_synonym: cellular component disassembly involved in apoptosis
 broad_synonym: cellular component disassembly involved in apoptotic process;   disassembly of cell structures



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cellular component disassembly involved in execution phase of apoptosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bok BCL2 family apoptosis regulator BOK involved_in ISS
ISO
GO_REF:0000024
(PMID:23429263)
UniProt
RGD
PMID:23429263 GO_REF:0000024 NCBI chr 9:101,670,729...101,681,834 JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 involved_in ISO (PMID:10490026) RGD PMID:10490026 NCBI chr15:32,072,121...32,117,004 JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO
IEA
(PMID:10959840)
GO_REF:0000107
RGD
Ensembl
PMID:10959840 GO_REF:0000107 NCBI chr 5:169,804,873...169,817,157 JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 involved_in ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:186,153,115...186,174,521 JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 involved_in IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:15,217,217...15,222,679 JBrowse link
G Kdm4a lysine demethylase 4A IMP RGD PMID:24747049 RGD:9587433 NCBI chr 5:131,672,754...131,719,534 JBrowse link
G Top2a DNA topoisomerase II alpha involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:10959840)
Ensembl
GO_Central
RGD
PMID:10959840 GO_REF:0000033 GO_REF:0000107 NCBI chr10:84,441,954...84,473,093 JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cck cholecystokinin IDA pancreatic acinar cells RGD PMID:11964411 RGD:625521 NCBI chr 8:121,153,499...121,160,194 JBrowse link
G Dffa DNA fragmentation factor subunit alpha involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:159,540,715...159,553,639 JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in
acts_upstream_of_or_within
IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000002
(PMID:15572351)
(PMID:22253444)
GO_REF:0000107
GO_Central
InterPro
RGD
Ensembl
PMID:15572351 PMID:22253444 PMID:11425895 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:628524 NCBI chr 5:169,804,873...169,817,157 JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:123,627,529...123,692,278 JBrowse link
G Dnase1l3 deoxyribonuclease 1L3 acts_upstream_of_or_within
involved_in
TAS
ISO
IBA
(PMID:12050166)
GO_REF:0000033
(PMID:23229555)
RGD
GO_Central
PMID:12050166 PMID:23229555 PMID:9665719 GO_REF:0000033, RGD:728743 NCBI chr15:19,351,683...19,378,536 JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr19:23,244,656...23,247,376 JBrowse link
G Dnase2b deoxyribonuclease 2 beta involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr 2:235,470,915...235,515,211 JBrowse link
G Endog endonuclease G acts_upstream_of_or_within ISO MGI:3034030|MGI:3514265 (PMID:14663139) RGD PMID:14663139 NCBI chr 3:13,449,113...13,451,715 JBrowse link
G Exog exo/endonuclease G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:128,062,688...128,082,529 JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:99,512,971...99,514,500 JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IEA
ISO
GO_REF:0000107
MGI:1857091 (PMID:11403940)
Ensembl
RGD
PMID:11403940 GO_REF:0000107 NCBI chr14:95,378,821...95,455,871 JBrowse link
apoptotic nuclear changes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C involved_in IEA
ISO
GO_REF:0000107
(PMID:15531507)
Ensembl
RGD
PMID:15531507 GO_REF:0000107 NCBI chr 3:63,224,322...63,301,252 JBrowse link
G Blcap BLCAP, apoptosis inducing factor involved_in ISO (PMID:17031575) RGD PMID:17031575 NCBI chr 3:146,222,699...146,232,859 JBrowse link
G Cd24 CD24 molecule acts_upstream_of_or_within ISO (PMID:14707049) RGD PMID:14707049 NCBI chr20:47,074,353...47,079,662 JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in ISO
IEA
ISS
(PMID:23478299)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23478299 GO_REF:0000024 GO_REF:0000107 NCBI chr10:81,894,393...81,903,581 JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:14625552) RGD PMID:14625552 NCBI chr20:11,905,690...11,924,111 JBrowse link
G Dedd2 death effector domain containing 2 involved_in ISO (PMID:11741985) RGD PMID:11741985 NCBI chr 1:80,789,084...80,807,789 JBrowse link
G Hnf1a HNF1 homeobox A IMP RGD PMID:20841353 RGD:150540305 NCBI chr12:47,299,171...47,333,457 JBrowse link
G Sharpin SHANK-associated RH domain interactor acts_upstream_of_or_within ISO MGI:1856699 (PMID:7792947) RGD PMID:7792947 NCBI chr 7:109,951,336...109,955,552 JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha acts_upstream_of_or_within
involved_in
ISO (PMID:15572351)
MGI:2179456 (PMID:10601318), (PMID:14663139)
(PMID:11371636)
RGD PMID:10601318 PMID:11371636 PMID:14663139 PMID:15572351 NCBI chr 5:159,540,715...159,553,639 JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO
IEA
(PMID:11371636)
GO_REF:0000107
RGD
Ensembl
PMID:11371636 GO_REF:0000107 NCBI chr 5:169,804,873...169,817,157 JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 IMP RGD PMID:27184051 RGD:13781945 NCBI chr 5:159,910,242...159,928,201 JBrowse link
G Pam16 presequence translocase associated motor 16 IDA RGD PMID:24069394 RGD:13462066 NCBI chr10:10,942,534...10,950,654 JBrowse link
nuclear fragmentation involved in apoptotic nuclear change term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gper1 G protein-coupled estrogen receptor 1 involved_in IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:15,217,217...15,222,679 JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) RGD PMID:11350920 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Endog endonuclease G IMP RGD PMID:16407272 RGD:9685355 NCBI chr 3:13,449,113...13,451,715 JBrowse link
G Gata5 GATA binding protein 5 IMP RGD PMID:25726415 RGD:155260369 NCBI chr 3:187,796,140...187,804,327 JBrowse link
G Hsf1 heat shock transcription factor 1 IMP RGD PMID:21192280 RGD:10403035 NCBI chr 7:110,076,710...110,103,665 JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 IMP RGD PMID:15125883 RGD:10402776 NCBI chr14:86,270,208...86,277,944 JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:28433754) RGD PMID:28433754 NCBI chr 4:5,889,999...5,894,575 JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor, mitochondria associated 1 acts_upstream_of_or_within ISO MGI:1306796 (PMID:15703386) RGD PMID:15703386 NCBI chr  X:132,528,107...132,567,237 JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO MGI:1349414 (PMID:15703386) RGD PMID:15703386 NCBI chr 7:27,381,392...27,466,772 JBrowse link
G Cidea cell death-inducing DFFA-like effector a involved_in ISO (PMID:9564035) RGD PMID:9564035 NCBI chr18:63,164,817...63,190,384 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      execution phase of apoptosis 82
        cellular component disassembly involved in execution phase of apoptosis 35
          apoptotic nuclear changes + 34
Path 2
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      cell death 2184
        programmed cell death 2184
          apoptotic process 2112
            execution phase of apoptosis 82
              cellular component disassembly involved in execution phase of apoptosis 35
                apoptotic nuclear changes + 34
paths to the root