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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagy
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Accession:GO:0006914 term browser browse the term
Definition:The cellular catabolic process in which cells digest cellular materials, such as organelles and other macromolecular constituents, or non-self materials such as intracellular pathogens. Autophagy serves to provide essential nutrients under conditions of cellular stress; or can remodel intracellular structures during cell differentiation.
Synonyms:alt_id: GO:0016238
 xref: Reactome:R-HSA-9612973 "Autophagy";   Wikipedia:Autophagy_(cellular)
 only_in_taxon: NCBITaxon:2759 ! Eukaryota



show annotations for term's descendants           Sort by:
autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001519.1 involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104
G AABR07025818.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G AABR07035218.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Acvr2a activin A receptor type 2A IMP RGD PMID:27769861 RGD:329853763 NCBI chr 3:53,614,143...53,701,933 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 acts_upstream_of_or_within ISO MGI:3715977 (PMID:17589504) RGD PMID:17589504 NCBI chr 3:98,156,626...98,345,876 JBrowse link
G Anxa7 annexin A7 involved_in ISO (PMID:24007983) RGD PMID:24007983 NCBI chr15:3,821,798...3,849,659 JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043 JBrowse link
G Arsa arylsulfatase A IDA RGD PMID:8037 RGD:1599235 NCBI chr 7:120,542,788...120,547,577 JBrowse link
G Arsb arylsulfatase B IDA RGD PMID:8037 RGD:1599235 NCBI chr 2:25,002,210...25,162,675 JBrowse link
G Atg10 autophagy related 10 involved_in ISO (PMID:15657430), (PMID:17256008) RGD PMID:15657430 PMID:17256008 NCBI chr 2:23,843,695...24,133,459 JBrowse link
G Atg101 autophagy related 101 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:132,398,477...132,407,643 JBrowse link
G Atg12 autophagy related 12 IMP RGD PMID:18059433 RGD:2301217 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:19270693), (PMID:19270696) RGD PMID:19270693 PMID:19270696 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872) RGD PMID:22082872 NCBI chr 1:155,687,386...155,703,419 JBrowse link
G Atg3 autophagy related 3 involved_in IEP
ISO
IEA
ISS
(PMID:18768753)
GO_REF:0000117
GO_REF:0000024
RGD
UniProt
PMID:18768753 PMID:17110912 GO_REF:0000024 GO_REF:0000117, RGD:1643237 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO (PMID:30661429) RGD PMID:30661429 NCBI chr  X:109,453,712...109,553,758 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA
(PMID:18387192), (PMID:26378241), (PMID:27527864), (PMID:28821708)
(PMID:20577052)
GO_REF:0000043
RGD
UniProt
PMID:18387192 PMID:20577052 PMID:26378241 PMID:27527864 PMID:28821708 GO_REF:0000043 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO (PMID:30661429) RGD PMID:30661429 NCBI chr 5:113,867,218...113,935,534 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO (PMID:30661429) RGD PMID:30661429 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg5 autophagy related 5 involved_in IMP
ISO
ISS
(PMID:11266458), (PMID:23878245)
UniProtKB:O95352 (PMID:26812546), (PMID:28389568)
GO_REF:0000024
RGD
UniProt
PMID:11266458 PMID:23878245 PMID:26812546 PMID:28389568 PMID:18059433 GO_REF:0000024, RGD:2301217 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
(PMID:20080761), (PMID:29937374)
GO_REF:0000043
MGI:2137515|MGI:2176052|MGI:2176073|MGI:3587769|MGI:3587771 (PMID:15866887), (PMID:16885219), (PMID:17450150), (PMID:17726112), (PMID:20577052)
UniProtKB:Q9H1Y0 (PMID:20543840), (PMID:24681637), (PMID:28389568)
(PMID:25327288)
UniProt
RGD
PMID:15866887 PMID:16885219 PMID:17450150 PMID:17726112 PMID:20080761 More... GO_REF:0000024 GO_REF:0000043 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO MGI:4417824 (PMID:19926846)
(PMID:27587839)
RGD PMID:19926846 PMID:27587839 NCBI chr 9:76,677,403...76,688,050 JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:27278822) RGD PMID:27278822 NCBI chr 5:153,292,722...153,312,143 JBrowse link
G Bcas3 BCAS3, microtubule associated cell migration factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:70,711,084...71,170,492 JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within
IMP
ISO
IEA
ISS
(PMID:23364696), (PMID:23629966), (PMID:25891078)
GO_REF:0000117
(PMID:12372286), (PMID:17589504)
(PMID:23184933), (PMID:23629966), (PMID:24056303), (PMID:25891078)
(PMID:28747345)
GO_REF:0000024
RGD
UniProt
PMID:12372286 PMID:17589504 PMID:23184933 PMID:23364696 PMID:23629966 More... GO_REF:0000024 GO_REF:0000117, RGD:1643194, RGD:11558011 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Becn2 beclin 2 involved_in
acts_upstream_of_or_within
ISO (PMID:23954414)
MGI:5550535 (PMID:23954414)
RGD PMID:23954414 NCBI chr13:90,375,186...90,424,533 JBrowse link
G Bmal1 basic helix-loop-helix ARNT like 1 acts_upstream_of_or_within ISO MGI:2180361 (PMID:26945058) RGD PMID:26945058 NCBI chr 1:176,766,222...176,864,741 JBrowse link
G C1h19orf12 similar to human chromosome 19 open reading frame 12 involved_in ISO (PMID:26136767) RGD PMID:26136767 NCBI chr 1:90,873,578...90,887,205 JBrowse link
G C20h6orf89 similar to human chromosome 6 open reading frame 89 acts_upstream_of_or_within ISO (PMID:35820707) RGD PMID:35820707 NCBI chr20:7,322,483...7,362,054 JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433 JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,337,478...3,364,015 JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566 JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323), (PMID:24095276) RGD PMID:17984323 PMID:24095276 NCBI chr 3:143,170,859...143,211,376 JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 2:91,391,729...91,428,652 JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:60,877,369...60,894,512 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642 JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:44,790,983...44,806,216 JBrowse link
G Cltc clathrin heavy chain involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:72,014,984...72,073,308 JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:21037586), (PMID:22024752), (PMID:26565691) RGD PMID:21037586 PMID:22024752 PMID:26565691 NCBI chr20:11,905,690...11,924,111 JBrowse link
G Creg1 cellular repressor of E1A-stimulated genes 1 acts_upstream_of_or_within ISO MGI:7384603 (PMID:33966596) RGD PMID:33966596 NCBI chr13:80,552,779...80,565,272 JBrowse link
G Ctsb cathepsin B IEP RGD PMID:18567942 RGD:2315511 NCBI chr15:41,565,607...41,586,479 JBrowse link
G Dap death-associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:82,199,206...82,251,771 JBrowse link
G Dnm2 dynamin 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:29437695), (PMID:32315611)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:29437695 PMID:32315611 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:28,254,344...28,336,297 JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:194,035,624...194,064,415 JBrowse link
G Drd2 dopamine receptor D2 IDA RGD PMID:26649942 RGD:13506953 NCBI chr 8:58,605,403...58,669,339 JBrowse link
G Drd3 dopamine receptor D3 IMP RGD PMID:26649942 RGD:13506953 NCBI chr11:70,385,586...70,437,793 JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein acts_upstream_of_or_within ISO MGI:2176173|MGI:5475023 (PMID:23074225) RGD PMID:23074225 NCBI chr 8:44,683,138...44,699,502 JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:110,280,059...110,295,070 JBrowse link
G ENSRNOG00000062718 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000063835 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000066153 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G ENSRNOG00000067112 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Epg5 ectopic P-granules 5 autophagy tethering factor acts_upstream_of_or_within ISO MGI:5505596 (PMID:23479740) RGD PMID:23479740 NCBI chr18:73,679,106...73,776,694 JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO MGI:2182627 (PMID:24914213) RGD PMID:24914213 NCBI chr 1:5,727,111...5,845,338 JBrowse link
G Eva1a eva-1 homolog A, regulator of programmed cell death acts_upstream_of_or_within ISO (PMID:28151473) RGD PMID:28151473 NCBI chr 4:114,593,773...114,643,011 JBrowse link
G Fnbp1l formin binding protein 1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:210,647,241...210,748,203 JBrowse link
G Foxo1 forkhead box O1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:138,462,974...138,541,420 JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:5,083,635...5,100,293 JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:55,213,465...55,216,787 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:164,666,332...164,675,474 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:56,819,826...56,830,662 JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within
ISO (PMID:27378698)
(PMID:23707074)
RGD PMID:23707074 PMID:27378698 NCBI chr 2:176,902,141...176,916,015 JBrowse link
G Gimap6 GTPase, IMAP family member 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:35551368)
GO_REF:0000107
RGD
Ensembl
PMID:35551368 GO_REF:0000107 NCBI chr 4:77,653,703...77,659,112 JBrowse link
G Gramd1a GRAM domain containing 1A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:86,367,001...86,393,348 JBrowse link
G Hap1 huntingtin-associated protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:85,778,267...85,786,553 JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of ISO MGI:3613033 (PMID:20041218) RGD PMID:20041218 NCBI chr 8:75,796,347...75,965,347 JBrowse link
G Hmga1 high mobility group AT-hook 1 acts_upstream_of_or_within ISO (PMID:32123163) RGD PMID:32123163 NCBI chr20:5,611,088...5,618,755 JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:11,009,236...11,015,941 JBrowse link
G Hmgb1l2 high mobility group box 1 like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:107,671,273...107,672,015 JBrowse link
G Inhba inhibin subunit beta A IDA RGD PMID:27769861 RGD:329853763 NCBI chr17:53,787,159...53,810,942 JBrowse link
G Itgb4 integrin subunit beta 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:24007983)
Ensembl
RGD
PMID:24007983 GO_REF:0000107 NCBI chr10:101,705,592...101,741,933 JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISO (PMID:12221139) RGD PMID:12221139 NCBI chr  X:122,038,734...122,087,745 JBrowse link
G LOC100363472 nuclear receptor-binding factor 2-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:8,984,365...8,986,171 JBrowse link
G LOC134483981 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G LOC134485624 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:9,859,816...9,942,294 JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO MGI:2444304 (PMID:33941276) RGD PMID:33941276 NCBI chr 5:21,437,127...21,553,097 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha IDA RGD PMID:16420522 RGD:1643189 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IEA
(PMID:23629966)
GO_REF:0000043
RGD
UniProt
PMID:23629966 GO_REF:0000043 NCBI chr19:66,571,631...66,582,270 JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO (PMID:35087090) RGD PMID:35087090 NCBI chr 2:123,822,042...123,847,808 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:26147524), (PMID:26607664) RGD PMID:26147524 PMID:26607664 NCBI chr10:86,001,545...86,009,049 JBrowse link
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:3808349 (PMID:24914213) RGD PMID:24914213 NCBI chr17:17,674,303...17,677,144 JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO UniProtKB:P10636 (PMID:19074461) RGD PMID:19074461 NCBI chr18:3,379,482...3,425,100 JBrowse link
G Nrbf2 nuclear receptor binding factor 2 involved_in ISO
IBA
IEA
(PMID:24785657)
(PMID:24849286)
GO_REF:0000033
GO_REF:0000002
RGD
GO_Central
InterPro
PMID:24785657 PMID:24849286 GO_REF:0000002 GO_REF:0000033 NCBI chr20:21,308,555...21,326,881 JBrowse link
G Nrbf2l1 nuclear receptor binding factor 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,253,957...182,256,611 JBrowse link
G Optn optineurin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:73,209,572...73,260,251 JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:166,636,551...166,659,825 JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:54,718,663...54,722,784 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within ISO (PMID:25327288) RGD PMID:25327288 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:108,474,017...108,579,140 JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:88,313,837...88,366,182 JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO MGI:1856217|MGI:2447704 (PMID:14627652), (PMID:17174099), (PMID:25014022) RGD PMID:14627652 PMID:17174099 PMID:25014022 NCBI chr10:48,294,932...48,324,941 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:55,967,766...56,003,450 JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:125,036,945...125,109,010 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 1:51,236,410...52,430,242 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:1930934 (PMID:15123735) RGD PMID:15123735 NCBI chr 6:109,054,160...109,106,191 JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:113,927,119...113,953,722 JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
ISS
(PMID:22939626)
GO_REF:0000024
RGD
UniProt
PMID:22939626 GO_REF:0000024 NCBI chr14:98,623,582...98,648,766 JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:54,088,246...54,105,867 JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:17,688,049...17,709,412 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 acts_upstream_of_or_within
involved_in
ISO MGI:2176173|MGI:3526069 (PMID:31006538)
(PMID:18443221)
RGD PMID:18443221 PMID:31006538 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) RGD PMID:31446166 NCBI chr 2:76,335,609...76,474,817 JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IBA
IEA
ISS
(PMID:24549040)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:24549040 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434 JBrowse link
G Rnf166 ring finger protein 166 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:50,529,434...50,539,274 JBrowse link
G Rnf185 ring finger protein 185 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:78,292,517...78,329,832 JBrowse link
G Rubcn rubicon autophagy regulator involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:67,907,534...67,964,347 JBrowse link
G S100a8 S100 calcium binding protein A8 involved_in ISS
ISO
GO_REF:0000024
(PMID:19935772)
UniProt
RGD
PMID:19935772 GO_REF:0000024 NCBI chr 2:178,464,095...178,465,223 JBrowse link
G S100a9 S100 calcium binding protein A9 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19935772)
Ensembl
UniProt
RGD
PMID:19935772 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:178,487,941...178,490,622 JBrowse link
G Sirt2 sirtuin 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:93,181,472...93,204,499 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:45,957,146...45,968,388 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20173742), (PMID:20421418)
(PMID:17580304), (PMID:20452972)
UniProt
RGD
PMID:17580304 PMID:20173742 PMID:20421418 PMID:20452972 GO_REF:0000024 NCBI chr10:35,026,598...35,037,750 JBrowse link
G Srpx sushi-repeat-containing protein, X-linked acts_upstream_of_or_within ISO MGI:3706175 (PMID:19368996) RGD PMID:19368996 NCBI chr  X:15,349,498...15,420,389 JBrowse link
G Stk11 serine/threonine kinase 11 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:10,225,204...10,241,965 JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:27278822)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27278822 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354 JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO (PMID:22354992) RGD PMID:22354992 NCBI chr 9:3,503,328...4,017,131 JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (PMID:23908015) RGD PMID:23908015 NCBI chr 1:210,556,270...210,568,021 JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO
ISS
(PMID:21575909)
GO_REF:0000024
RGD
UniProt
PMID:21575909 GO_REF:0000024 NCBI chr12:10,391,587...10,420,462 JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:45,320,975...45,371,329 JBrowse link
G Tm9sf1 transmembrane 9 superfamily member 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:29,127,585...29,135,334 JBrowse link
G Tmbim6 transmembrane BAX inhibitor motif containing 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:130,527,313...130,542,567 JBrowse link
G Tmem150b transmembrane protein 150B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:69,124,943...69,134,617 JBrowse link
G Tmem39a transmembrane protein 39a involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:62,160,631...62,189,964 JBrowse link
G Tmem59 transmembrane protein 59 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:121,962,507...121,983,625 JBrowse link
G Tollip toll interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:196,961,585...196,984,252 JBrowse link
G Tp53 tumor protein p53 involved_in ISO (PMID:23629966) RGD PMID:23629966 NCBI chr10:54,798,871...54,810,300 JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:29,051,267...29,069,486 JBrowse link
G Trappc4 trafficking protein particle complex subunit 4 involved_in ISO
IEA
ISS
(PMID:31794024)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31794024 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:53,626,382...53,630,042 JBrowse link
G Trim17 tripartite motif-containing 17 involved_in ISO (PMID:25127057) RGD PMID:25127057 NCBI chr10:43,743,111...43,750,929 JBrowse link
G Trim5 tripartite motif-containing 5 involved_in ISO (PMID:25127057) RGD PMID:25127057 NCBI chr 1:158,720,407...158,737,393 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO UniProtKB:Q8IYT8 (PMID:17595159), (PMID:18936157), (PMID:25891078), (PMID:28389568)
(PMID:18443221), (PMID:21258367)
RGD PMID:17595159 PMID:18443221 PMID:18936157 PMID:21258367 PMID:25891078 More... NCBI chr12:51,511,492...51,537,746 JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in ISO UniProtKB:O75385 (PMID:18936157), (PMID:28389568)
(PMID:18443221)
RGD PMID:18443221 PMID:18936157 PMID:28389568 NCBI chr10:46,951,038...47,029,844 JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 8:66,888,820...66,895,380 JBrowse link
G Umod uromodulin acts_upstream_of_or_within ISO (PMID:28990932) RGD PMID:28990932 NCBI chr 1:183,247,676...183,261,665 JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:47,972,858...48,014,900 JBrowse link
G Usp13 ubiquitin specific peptidase 13 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:115,576,912...115,689,153 JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:24056303) RGD PMID:24056303 NCBI chr 1:153,185,356...153,442,200 JBrowse link
G Vcp valosin-containing protein involved_in ISO
ISS
(PMID:20104022), (PMID:25125609)
GO_REF:0000024
RGD
UniProt
PMID:20104022 PMID:25125609 GO_REF:0000024 NCBI chr 5:62,005,984...62,025,387 JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IDA
(PMID:28890335)
(PMID:17940279)
RGD PMID:17940279 PMID:28890335 PMID:17940279 RGD:8554414 NCBI chr10:71,903,223...72,002,337 JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:53,580,939...53,595,378 JBrowse link
G Vps13a vacuolar protein sorting 13 homolog A acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:25996471)
GO_REF:0000033
MGI:96892 (PMID:33941276)
RGD
GO_Central
PMID:25996471 PMID:33941276 GO_REF:0000033 NCBI chr 1:223,328,784...223,555,500 JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO
IBA
(PMID:24554770)
GO_REF:0000033
RGD
GO_Central
PMID:24554770 GO_REF:0000033 NCBI chr 3:107,266,846...107,304,884 JBrowse link
G Vps51 VPS51 subunit of GARP complex involved_in ISO (PMID:20685960) RGD PMID:20685960 NCBI chr 1:203,360,434...203,370,422 JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in ISO (PMID:24095276) RGD PMID:24095276 NCBI chr 1:264,361,538...264,667,171 JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000043
(PMID:23435086)
UniProt
RGD
PMID:23435086 GO_REF:0000024 GO_REF:0000043 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO MGI:4433065 (PMID:29078390) RGD PMID:29078390 NCBI chr 2:196,226,757...196,287,739 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:15602573), (PMID:17618624) RGD PMID:15602573 PMID:17618624 NCBI chr10:95,042,451...95,079,679 JBrowse link
aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:113,867,218...113,935,534 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg5 autophagy related 5 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:22982048)
Ensembl
GO_Central
RGD
PMID:22982048 GO_REF:0000033 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:25723488), (PMID:33397898)
GO_REF:0000033
UniProtKB:Q562E7 (PMID:17580304), (PMID:22017874), (PMID:28404643), (PMID:29343546), (PMID:29507397), (PMID:31857589), (PMID:37306101), (PMID:37802024)
UniProt
RGD
GO_Central
PMID:17580304 PMID:22017874 PMID:25723488 PMID:28404643 PMID:29343546 More... GO_REF:0000024 GO_REF:0000033 NCBI chr10:35,026,598...35,037,750 JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21143716)
Ensembl
UniProt
RGD
PMID:21143716 GO_REF:0000024 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096 JBrowse link
G Wdfy3 WD repeat and FYVE domain containing 3 involved_in ISO
IBA
(PMID:20168092), (PMID:20417604)
GO_REF:0000033
RGD
GO_Central
PMID:20168092 PMID:20417604 GO_REF:0000033 NCBI chr14:7,578,245...7,810,491 JBrowse link
G Wdr81 WD repeat domain 81 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:28404643)
UniProt
GO_Central
Ensembl
RGD
PMID:28404643 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,281,969...60,295,374 JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA
(PMID:20921139), (PMID:25215947)
GO_REF:0000033
(PMID:23524951)
RGD
GO_Central
PMID:20921139 PMID:23524951 PMID:25215947 GO_REF:0000033 NCBI chr 3:98,156,626...98,345,876 JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
ISS
(PMID:29180427)
GO_REF:0000024
RGD
UniProt
PMID:29180427 GO_REF:0000024 NCBI chr12:17,049,766...17,055,954 JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:12,093,834...12,109,043 JBrowse link
G Atg10 autophagy related 10 involved_in ISO
IBA
(PMID:16963840)
GO_REF:0000033
RGD
GO_Central
PMID:16963840 GO_REF:0000033 NCBI chr 2:23,843,695...24,133,459 JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA
IEA
(PMID:19225151), (PMID:19597335)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:19225151 PMID:19597335 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:132,398,477...132,407,643 JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO
GO_REF:0000002
GO_REF:0000033
(PMID:11266458)
InterPro
GO_Central
RGD
PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in
ISO (PMID:19211835)
(PMID:19225151), (PMID:19258318)
(PMID:19211835), (PMID:19225151)
RGD PMID:19211835 PMID:19225151 PMID:19258318 NCBI chr 3:77,647,069...77,681,028 JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:19270696), (PMID:20713597)
GO_REF:0000033
RGD
GO_Central
PMID:19270696 PMID:20713597 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IBA
(PMID:30778222)
(PMID:11266458)
GO_REF:0000033
RGD
GO_Central
PMID:11266458 PMID:30778222 GO_REF:0000033 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)
RGD PMID:11266458 PMID:22082872 NCBI chr 1:155,687,386...155,703,419 JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA
(PMID:28561066)
GO_REF:0000033
RGD
GO_Central
PMID:28561066 GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412 JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636)
UniProt
RGD
GO_Central
Ensembl
PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
(PMID:25578879)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 PMID:25578879 GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr 5:113,867,218...113,935,534 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA
(PMID:21177865)
GO_REF:0000033
RGD
GO_Central
PMID:21177865 GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IMP
IBA
ISO
IEA
GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584)
GO_Central
RGD
Ensembl
PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:22170151)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20080761 PMID:22170151 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO
IEA
ISS
(PMID:15755735), (PMID:22456507)
GO_REF:0000107
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)
RGD
Ensembl
UniProt
PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 9:76,677,403...76,688,050 JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:10,784,934...10,793,832 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:28890335)
UniProt
GO_Central
RGD
PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:34,072,710...34,122,142 JBrowse link
G Becn1 beclin 1 involved_in IMP
ISO
IBA
ISS
(PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:23332761 PMID:25891078 PMID:16420522 GO_REF:0000024 GO_REF:0000033, RGD:1643189 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:90,375,186...90,424,533 JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15452145)
GO_REF:0000107
RGD
Ensembl
PMID:15452145 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821 JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA
(PMID:21072319)
GO_REF:0000033
RGD
GO_Central
PMID:21072319 GO_REF:0000033 NCBI chr 2:198,777,323...198,856,497 JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA
(PMID:23182941)
GO_REF:0000033
RGD
GO_Central
PMID:23182941 GO_REF:0000033 NCBI chr10:57,794,072...57,795,671 JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2182627 (PMID:24430976)
Ensembl
RGD
PMID:24430976 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338 JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662 JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,761,118...53,770,183 JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,870,838...53,890,135 JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,838,426...53,854,858 JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,297,618...33,305,248 JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,374,590...42,382,410 JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IBA
(PMID:16888103)
GO_REF:0000033
RGD
GO_Central
PMID:16888103 GO_REF:0000033 NCBI chr10:33,233,513...33,241,594 JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
IDA
(PMID:24290141)
GO_REF:0000033
PMID:11060023
RGD
GO_Central
PMID:24290141 PMID:11060023 GO_REF:0000033, RGD:8554284 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:37943659)
GO_REF:0000033
RGD
GO_Central
PMID:37943659 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270 JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:488,923...506,882 JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:160,438,708...160,463,261 JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:132,096,992...132,156,702 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(PMID:24098492)
GO_REF:0000033
(PMID:33637724)
RGD
GO_Central
PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033, RGD:2303129 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (PMID:15452145) RGD PMID:15452145 NCBI chr 6:109,054,160...109,106,191 JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:68,157,159...68,166,889 JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS
(PMID:22939626)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:98,623,582...98,648,766 JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:202,405,759...202,413,850 JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA
(PMID:22452336)
GO_REF:0000033
RGD
GO_Central
PMID:22452336 GO_REF:0000033 NCBI chr 9:35,943,522...35,967,367 JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:127,694,219...127,706,378 JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IBA
ISO
GO_REF:0000033
(PMID:18448665)
GO_Central
RGD
PMID:18448665 GO_REF:0000033 NCBI chr 2:135,528,116...135,538,719 JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:120,249,650...120,269,174 JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:120,461,966...120,510,756 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IBA
(PMID:19225151), (PMID:28890335)
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225)
RGD
GO_Central
PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,252,146...33,276,364 JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA
(PMID:26416964)
GO_REF:0000033
RGD
GO_Central
PMID:26416964 GO_REF:0000033 NCBI chr 9:75,702,937...75,727,719 JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544 JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA
IEA
(PMID:24095276)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:24095276 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:150,347,554...150,376,426 JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267 JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (PMID:23908015) RGD PMID:23908015 NCBI chr 1:210,556,270...210,568,021 JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966)
UniProt
GO_Central
RGD
PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:164,012,585...164,026,967 JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:29,051,267...29,069,486 JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS
(PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:143,881,427...143,890,104 JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO
IEA
(PMID:23524951)
GO_REF:0000107
RGD
Ensembl
PMID:23524951 GO_REF:0000107 NCBI chr 3:87,963,517...87,988,316 JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483 JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA
(PMID:20529957)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096 JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,853,086...17,856,505 JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,884,364...27,912,767 JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:19,303,634...19,333,181 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:19225151), (PMID:28890335)
GO_REF:0000033
(PMID:19225151), (PMID:19258318)
RGD
GO_Central
PMID:19225151 PMID:19258318 PMID:28890335 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844 JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380 JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS
(PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337 JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS
(PMID:28561066)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)
UniProt
RGD
PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:17,024,876...17,053,306 JBrowse link
autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg2b AFG2 AAA ATPase homolog B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:109,694,739...109,708,356 JBrowse link
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433 JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894 JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,337,478...3,364,015 JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566 JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:143,170,859...143,211,376 JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in ISO
IEA
(PMID:17984323)
GO_REF:0000107
RGD
Ensembl
PMID:17984323 GO_REF:0000107 NCBI chr 2:91,391,729...91,428,652 JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:60,877,369...60,894,512 JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642 JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:44,790,983...44,806,216 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (PMID:16714284) RGD PMID:16714284 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:110,280,059...110,295,070 JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5505596 (PMID:23479740)
GO_Central
RGD
PMID:23479740 GO_REF:0000033 NCBI chr18:73,679,106...73,776,694 JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662 JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
ISO
GO_REF:0000024
(PMID:21757726)
UniProt
RGD
PMID:21757726 GO_REF:0000024 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:27628032)
GO_REF:0000033
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:27628032 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:122,038,734...122,087,745 JBrowse link
G Lix1 limb and CNS expressed 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:58,128,961...58,187,554 JBrowse link
G Lix1l limb and CNS expressed 1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:184,136,018...184,161,918 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
(PMID:28223137)
GO_REF:0000033
RGD
GO_Central
PMID:28223137 GO_REF:0000033 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA
(PMID:28223137)
GO_REF:0000033
RGD
GO_Central
PMID:28223137 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270 JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 acts_upstream_of_or_within ISO MGI:3794204 (PMID:20600908) RGD PMID:20600908 NCBI chr12:1,560,341...1,574,252 JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:29514215)
GO_REF:0000033
RGD
GO_Central
PMID:29514215 GO_REF:0000033 NCBI chr 2:123,822,042...123,847,808 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISO
IEA
(PMID:10625637)
GO_REF:0000107
RGD
Ensembl
PMID:10625637 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in ISO (PMID:10625637) RGD PMID:10625637 NCBI chr 8:115,146,660...115,195,326 JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502), (PMID:30704899)
(PMID:30704899)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 PMID:30704899 GO_REF:0000033 NCBI chr15:50,332,458...50,377,494 JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISS
ISO
GO_REF:0000024
(PMID:23217709)
UniProt
RGD
PMID:23217709 GO_REF:0000024 NCBI chr11:83,578,479...83,608,953 JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (PMID:20920792), (PMID:22797916) RGD PMID:20920792 PMID:22797916 NCBI chr 2:175,971,575...175,974,164 JBrowse link
G Snx14 sorting nexin 14 involved_in ISO
IBA
(PMID:25848753)
GO_REF:0000033
RGD
GO_Central
PMID:25848753 GO_REF:0000033 NCBI chr 8:89,283,673...89,390,597 JBrowse link
G Stx17 syntaxin 17 involved_in ISO
ISS
(PMID:23217709), (PMID:24554770), (PMID:28306502)
GO_REF:0000024
RGD
UniProt
PMID:23217709 PMID:24554770 PMID:28306502 GO_REF:0000024 NCBI chr 5:62,446,138...62,506,108 JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:22342342)
UniProt
GO_Central
RGD
PMID:22342342 GO_REF:0000024 GO_REF:0000033 NCBI chr12:10,391,587...10,420,462 JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:23459205)
Ensembl
RGD
PMID:23459205 GO_REF:0000107 NCBI chr17:6,439,002...6,477,096 JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:28306502) RGD PMID:28306502 NCBI chr 1:153,185,356...153,442,200 JBrowse link
G Vamp7 vesicle-associated membrane protein 7 NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr12:16,728,486...16,764,261 JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
ISS
(PMID:23217709)
GO_REF:0000024
RGD
UniProt
PMID:23217709 GO_REF:0000024 NCBI chr 4:104,442,383...104,452,884 JBrowse link
G Vcp valosin-containing protein involved_in ISO
IBA
ISS
(PMID:20104022)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:20104022 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:62,005,984...62,025,387 JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 6:106,888,284...106,913,139 JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:117,622,534...117,644,041 JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA
(PMID:24554770), (PMID:25783203)
GO_REF:0000107
RGD
Ensembl
PMID:24554770 PMID:25783203 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399 JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:143,633,167...143,656,228 JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B NOT|involved_in ISO (PMID:23217709) RGD PMID:23217709 NCBI chr 6:97,957,700...97,976,491 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 NOT|involved_in ISO (PMID:20505359) RGD PMID:20505359 NCBI chr12:17,024,876...17,053,306 JBrowse link
autophagosome membrane docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:25686604)
GO_REF:0000033
RGD
GO_Central
PMID:25686604 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO
ISS
(PMID:28890335)
GO_REF:0000024
RGD
UniProt
PMID:28890335 GO_REF:0000024 NCBI chr12:34,072,710...34,122,142 JBrowse link
G Calm1 calmodulin 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 6:125,217,191...125,227,855 JBrowse link
G Calm2 calmodulin 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 6:12,845,170...12,857,830 JBrowse link
G Calm3 calmodulin 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:28890335)
UniProt
RGD
PMID:28890335 GO_REF:0000024 NCBI chr 1:86,718,761...86,725,869 JBrowse link
G Snap29 synaptosome associated protein 29 involved_in ISO
IEA
(PMID:25686604)
GO_REF:0000107
RGD
Ensembl
PMID:25686604 GO_REF:0000107 NCBI chr11:83,578,479...83,608,953 JBrowse link
G Stx17 syntaxin 17 involved_in ISO (PMID:25686604) RGD PMID:25686604 NCBI chr 5:62,446,138...62,506,108 JBrowse link
G Vamp8 vesicle-associated membrane protein 8 involved_in ISO
IEA
(PMID:25686604)
GO_REF:0000107
RGD
Ensembl
PMID:25686604 GO_REF:0000107 NCBI chr 4:104,442,383...104,452,884 JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:28890335)
UniProt
Ensembl
RGD
PMID:28890335 GO_REF:0000024 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337 JBrowse link
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:153,292,722...153,312,143 JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015 JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:180,012,248...180,117,786 JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:47,046,866...47,107,733 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) RGD PMID:25365221 NCBI chr 3:109,007,658...109,072,904 JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25365221)
GO_REF:0000107
RGD
Ensembl
PMID:25365221 GO_REF:0000107 NCBI chr 6:98,031,874...98,095,538 JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:50,332,458...50,377,494 JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Arl8b ARF like GTPase 8B involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605 JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IBA
(PMID:30538141)
GO_REF:0000033
RGD
GO_Central
PMID:30538141 GO_REF:0000033 NCBI chr 5:153,292,722...153,312,143 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Diaph3 diaphanous-related formin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:33036023)
Ensembl
RGD
PMID:33036023 GO_REF:0000107 NCBI chr15:62,543,375...63,013,060 JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29727621)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29727621 GO_REF:0000024 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29727621)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29727621 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,202,379...83,231,292 JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISO
ISS
(PMID:28325809)
GO_REF:0000024
RGD
UniProt
PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182 JBrowse link
G Rubcnl rubicon like autophagy enhancer involved_in ISO
IBA
(PMID:28306502)
GO_REF:0000033
RGD
GO_Central
PMID:28306502 GO_REF:0000033 NCBI chr15:50,332,458...50,377,494 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,405,482...13,440,384 JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) RGD PMID:33422265 NCBI chr 3:107,266,846...107,304,884 JBrowse link
autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412 JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23981124) RGD PMID:23981124 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Capn10 calpain 10 IMP RGD PMID:22568896 RGD:7247732 NCBI chr 9:100,943,665...100,957,910 JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A involved_in ISO (PMID:25217637) RGD PMID:25217637 NCBI chr 5:109,100,763...109,114,448 JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in ISO
IBA
(PMID:19451219)
GO_REF:0000033
RGD
GO_Central
PMID:19451219 GO_REF:0000033 NCBI chr 2:223,828,937...223,853,768 JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 acts_upstream_of_or_within ISO (PMID:32525278)
MGI:6514034 (PMID:32525278)
RGD PMID:32525278 NCBI chr 5:40,752,513...40,826,154 JBrowse link
G Fbxo7 F-box protein 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:23933751)
UniProt
RGD
PMID:23933751 GO_REF:0000024 NCBI chr 7:17,809,224...17,837,549 JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in
acts_upstream_of_or_within
ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
UniProtKB:Q9H492 (PMID:22267086)
UniProt
GO_Central
RGD
PMID:22267086 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:5,083,635...5,100,293 JBrowse link
G Fundc2 FUN14 domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:128,473...138,232 JBrowse link
G Fundc2b FUN14 domain containing 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:123,877,836...123,880,083 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha acts_upstream_of_or_within ISO UniProtKB:Q8IVP5 (PMID:22267086) RGD PMID:22267086 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO
IBA
(PMID:20798600), (PMID:23933751), (PMID:24896179)
GO_REF:0000033
RGD
GO_Central
PMID:20798600 PMID:23933751 PMID:24896179 GO_REF:0000033 NCBI chr 5:155,813,838...155,825,950 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:19783904 RGD:10059673 NCBI chr14:63,073,505...63,729,215 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISS
ISO
GO_REF:0000024
(PMID:19029340), (PMID:23933751), (PMID:24896179), (PMID:25621951)
ParkinsonsUK-UCL
RGD
UniProt
PMID:19029340 PMID:23933751 PMID:24896179 PMID:25621951 GO_REF:0000024 NCBI chr 1:51,236,410...52,430,242 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G Slc25a46 solute carrier family 25, member 46 acts_upstream_of_or_within ISO MGI:6358090 (PMID:28934388) RGD PMID:28934388 NCBI chr18:23,215,954...23,244,917 JBrowse link
G Usp30 ubiquitin specific peptidase 30 involved_in ISO (PMID:24896179), (PMID:25621951) RGD PMID:24896179 PMID:25621951 NCBI chr12:42,501,345...42,555,311 JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306 JBrowse link
chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 6:135,523,604...135,529,687 JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 involved_in NAS PMID:18644871 ParkinsonsUK-UCL PMID:18644871 RGD:10412301 NCBI chr 9:22,930,249...22,935,929 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in
acts_upstream_of_or_within
IDA
IGI
PMID:18644871 ParkinsonsUK-UCL
MGI
PMID:18644871 PMID:18644871 RGD:10412301, RGD:10412301 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 involved_in
acts_upstream_of_or_within
IDA
ISO
PMID:11082038
UniProtKB:P13473 (PMID:18644871), (PMID:27628032)
(PMID:18579532)
(PMID:36586411)
(PMID:24880125), (PMID:27628032)
(PMID:8662539)
RGD PMID:8662539 PMID:18579532 PMID:18644871 PMID:24880125 PMID:27628032 More... RGD:1581607 NCBI chr  X:122,038,734...122,087,745 JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 2:211,217,099...211,371,267 JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:9,635,009...9,726,520 JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412 JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Gaa alpha glucosidase involved_in IEA
ISO
GO_REF:0000107
MGI:2148550 (PMID:12739885)
Ensembl
RGD
PMID:12739885 GO_REF:0000107 NCBI chr10:104,529,673...104,546,836 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) RGD PMID:20810658 NCBI chr 4:164,666,332...164,675,474 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
(PMID:20810658)
GO_REF:0000024
RGD
GO_Central
PMID:20810658 GO_REF:0000024 NCBI chr14:15,470,452...15,473,857 JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306 JBrowse link
late endosomal microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Haus8l2 HAUS augmin-like complex, subunit 8 like 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:5,628,432...5,630,535 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in IEA
ISO
GO_REF:0000107
(PMID:21238931)
Ensembl
RGD
PMID:21238931 GO_REF:0000107 NCBI chr 8:50,080,514...50,084,376 JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO
GO_REF:0000107
(PMID:21238931)
Ensembl
RGD
PMID:21238931 GO_REF:0000107 NCBI chr19:34,934,999...34,948,888 JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:21238931) RGD PMID:21238931 NCBI chr13:22,907,105...22,932,200 JBrowse link
lipophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor involved_in ISO
IEA
(PMID:29902443)
GO_REF:0000107
RGD
Ensembl
PMID:29902443 GO_REF:0000107 NCBI chr 4:115,560,274...115,563,346 JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(PMID:23708524)
GO_Central
RGD
PMID:23708524 GO_REF:0000024 NCBI chr 4:120,461,966...120,510,756 JBrowse link
G Spart spartin involved_in ISO (PMID:37443287), (PMID:38190532) RGD PMID:37443287 PMID:38190532 NCBI chr 2:141,442,770...141,469,388 JBrowse link
macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in ISO (PMID:25484072)
(PMID:11266458)
RGD PMID:11266458 PMID:25484072 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:23878393) RGD PMID:23878393 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO (PMID:29317426), (PMID:33586810)
(PMID:11266458)
RGD PMID:11266458 PMID:29317426 PMID:33586810 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg16l2 autophagy related 16-like 2 involved_in ISO (PMID:11266458) RGD PMID:11266458 NCBI chr 1:155,687,386...155,703,419 JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO (PMID:24035364) RGD PMID:24035364 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:25484072)
(PMID:11266458)
GO_REF:0000117
MGI:3612279 (PMID:20453062), (PMID:22496425), (PMID:23704209), (PMID:24035364)
RGD
UniProt
PMID:11266458 PMID:20453062 PMID:22496425 PMID:23704209 PMID:24035364 More... GO_REF:0000117 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
ISO (PMID:22354037)
MGI:1934631|MGI:3587769 (PMID:22496425), (PMID:23704209), (PMID:24035364)
RGD PMID:22354037 PMID:22496425 PMID:23704209 PMID:24035364 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:23332761)
MGI:1097712|MGI:2683833 (PMID:14657337), (PMID:17468177)
UniProt
RGD
PMID:14657337 PMID:17468177 PMID:23332761 GO_REF:0000024 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin acts_upstream_of_or_within ISO MGI:2388888 (PMID:16714284) RGD PMID:16714284 NCBI chr 1:181,156,071...181,169,458 JBrowse link
G Ei24 EI24, autophagy associated transmembrane protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,683,138...44,699,502 JBrowse link
G ENSRNOG00000067694 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G ENSRNOG00000067909 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Hdac10 histone deacetylase 10 involved_in ISO
IEA
ISS
(PMID:23801752)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23801752 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:120,199,126...120,205,850 JBrowse link
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:2429784 (PMID:20705711)
Ensembl
RGD
PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823 JBrowse link
G Ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:5,809,931...5,876,197 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr19:66,571,631...66,582,270 JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
(PMID:16714284)
Ensembl
RGD
PMID:16714284 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Myo5a myosin VA IMP RGD PMID:29217155 RGD:42721980 NCBI chr 8:84,692,524...84,860,564 JBrowse link
G Nbr1 NBR1, autophagy cargo receptor involved_in ISO
IBA
IEA
ISS
(PMID:19250911)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:19250911 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:86,978,024...87,006,664 JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of ISO MGI:1857409|MGI:1891828 (PMID:17468177) RGD PMID:17468177 NCBI chr18:3,379,482...3,425,100 JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25686249)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25686249 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:113,590,998...113,646,795 JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685054 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:180,012,248...180,117,786 JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:47,046,866...47,107,733 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:23332761), (PMID:25578879)
UniProt
RGD
PMID:23332761 PMID:25578879 GO_REF:0000024 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:115,146,660...115,195,326 JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase acts_upstream_of ISO (PMID:17476689) RGD PMID:17476689 NCBI chr  X:17,289,509...17,294,778 JBrowse link
G Plaa phospholipase A2, activating protein involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr 5:109,428,600...109,460,373 JBrowse link
G Rab2a RAB2A, member RAS oncogene family involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:28063257)
(PMID:28483915)
Ensembl
UniProt
RGD
PMID:28063257 PMID:28483915 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:26,473,424...26,537,441 JBrowse link
G Rab2b RAB2B, member RAS oncogene family involved_in ISO (PMID:28063257) RGD PMID:28063257 NCBI chr15:24,968,364...24,988,990 JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:96,757,430...96,828,930 JBrowse link
G Snf8 SNF8 subunit of ESCRT-II involved_in ISS
ISO
GO_REF:0000024
(PMID:38423010)
UniProt
RGD
PMID:38423010 GO_REF:0000024 NCBI chr10:81,481,054...81,493,430 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
ISS
(PMID:20168092)
GO_REF:0000024
RGD
UniProt
PMID:20168092 GO_REF:0000024 NCBI chr10:35,026,598...35,037,750 JBrowse link
G Tbc1d5 TBC1 domain family, member 5 involved_in ISO (PMID:24603492) RGD PMID:24603492 NCBI chr 9:3,503,328...4,017,131 JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:1856973 (PMID:23704209) RGD PMID:23704209 NCBI chr 1:210,556,270...210,568,021 JBrowse link
G Tecpr1 tectonin beta-propeller repeat containing 1 involved_in ISO (PMID:25484072) RGD PMID:25484072 NCBI chr12:10,391,587...10,420,462 JBrowse link
G Tmem74 transmembrane protein 74 involved_in ISO (PMID:18294959) RGD PMID:18294959 NCBI chr 7:74,929,290...74,937,929 JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 acts_upstream_of_or_within ISO MGI:1931135|MGI:5637673 (PMID:24713655) RGD PMID:24713655 NCBI chr 3:143,881,427...143,890,104 JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr17:6,439,002...6,477,096 JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:27753622) RGD PMID:27753622 NCBI chr 9:900,883...906,047 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:22354037)
UniProtKB:O70405 (PMID:21855797)
(PMID:21258367)
RGD PMID:21258367 PMID:21855797 PMID:22354037 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr 5:62,005,984...62,025,387 JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:50,758,732...50,923,129 JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:264,361,538...264,667,171 JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:97,957,700...97,976,491 JBrowse link
G Yod1 YOD1 deubiquitinase involved_in ISS
ISO
GO_REF:0000024
(PMID:27753622)
UniProt
RGD
PMID:27753622 GO_REF:0000024 NCBI chr13:42,175,047...42,181,661 JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 6:108,916,062...108,965,231 JBrowse link
microautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 involved_in ISO (PMID:29317426), (PMID:33586810)
(PMID:33586810)
RGD PMID:29317426 PMID:33586810 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA
(PMID:33909989)
GO_REF:0000107
RGD
Ensembl
PMID:33909989 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Zfp418 zinc finger protein 418 involved_in ISS
ISO
IMP
GO_REF:0000024
(PMID:33249983)
UniProt
RGD
PMID:33249983 PMID:33249983 GO_REF:0000024, RGD:329955556 NCBI chr 1:66,581,406...66,594,247 JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Abi2 abl-interactor 2 involved_in ISO (PMID:38081847) RGD PMID:38081847 NCBI chr 9:61,827,186...61,905,703 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA
UniProtKB:O60260|UniProtKB:Q99MQ3 (PMID:21753002), (PMID:25215947)
GO_REF:0000033
RGD
GO_Central
PMID:21753002 PMID:25215947 GO_REF:0000033 NCBI chr 3:98,156,626...98,345,876 JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS
(PMID:33773106)
GO_REF:0000024
RGD
UniProt
PMID:33773106 GO_REF:0000024 NCBI chr 1:159,974,255...159,980,398 JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in ISO (PMID:38081847) RGD PMID:38081847 NCBI chr18:30,835,806...31,237,945 JBrowse link
G Atg10 autophagy related 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:23,843,695...24,133,459 JBrowse link
G Atg13 autophagy related 13 involved_in IBA
ISO
GO_REF:0000033
(PMID:21855797)
GO_Central
RGD
PMID:21855797 GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028 JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA
(PMID:23878393)
GO_REF:0000033
RGD
GO_Central
PMID:23878393 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817 JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA
IEA
(PMID:33773106)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:33773106 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:113,867,218...113,935,534 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA
(PMID:33773106)
GO_REF:0000033
RGD
GO_Central
PMID:33773106 GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:20080761)
UniProtKB:Q9BXM7 (PMID:19279012)
Ensembl
GO_Central
RGD
PMID:19279012 PMID:20080761 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:76,677,403...76,688,050 JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832 JBrowse link
G Bcl2l13 Bcl2-like 13 acts_upstream_of_or_within ISO (PMID:31266807) RGD PMID:31266807 NCBI chr 4:155,728,284...155,785,058 JBrowse link
G Becn1 beclin 1 involved_in ISO
IBA
(PMID:23878393), (PMID:25215947)
GO_REF:0000033
RGD
GO_Central
PMID:23878393 PMID:25215947 GO_REF:0000033 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:90,375,186...90,424,533 JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) RGD PMID:22505714 NCBI chr 1:203,137,778...203,154,962 JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:35604110) RGD PMID:35604110 NCBI chr10:5,434,725...5,631,246 JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 2:185,747,548...185,758,512 JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO
ISS
(PMID:38340717)
GO_REF:0000024
RGD
UniProt
PMID:38340717 GO_REF:0000024 NCBI chr 6:103,405,880...103,430,549 JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO UniProtKB:P09936 (PMID:34244144) RGD PMID:34244144 NCBI chr  X:5,083,635...5,100,293 JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787 JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474 JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662 JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013 JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435 JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536 JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:164,243,204...164,244,850 JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
UniProtKB:Q9BXM7 (PMID:19279012), (PMID:28017329)
UniProt
GO_Central
RGD
PMID:19279012 PMID:28017329 GO_REF:0000024 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270 JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in ISO (PMID:30982665) RGD PMID:30982665 NCBI chr14:79,734,234...79,758,101 JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in ISO (PMID:30982665) RGD PMID:30982665 NCBI chr12:26,906,068...26,944,201 JBrowse link
G Nipsnap3a nipsnap homolog 3A (C. elegans) involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:67,613,993...67,625,067 JBrowse link
G Nipsnap3b nipsnap homolog 3B involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 5:67,637,644...67,669,698 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO
GO_REF:0000107
(PMID:33406421)
Ensembl
RGD
PMID:33406421 GO_REF:0000107 NCBI chr  X:70,811,317...70,856,123 JBrowse link
G Phb2 prohibitin 2 involved_in ISO
IEA
ISS
(PMID:28017329)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28017329 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:157,517,662...157,522,268 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IMP
ISO
UniProtKB:Q8CGY8 (PMID:33406421), (PMID:38081847) RGD PMID:33406421 PMID:38081847 PMID:25154397 RGD:12904014 NCBI chr 5:155,813,838...155,825,950 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within
IDA
IBA
ISO
PMID:20457763
GO_REF:0000033
(PMID:23685073), (PMID:28017329)
MGI:1921624 (PMID:24949970)
GO_Central
RGD
PMID:23685073 PMID:24949970 PMID:28017329 PMID:20457763 GO_REF:0000033, RGD:10047224 NCBI chr 1:51,236,410...52,430,242 JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) RGD PMID:31446166 NCBI chr 2:76,335,609...76,474,817 JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in ISO (PMID:34432599) RGD PMID:34432599 NCBI chr 2:53,189,787...53,203,981 JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:74,683,902...74,813,013 JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:205,843,164...205,927,737 JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) RGD PMID:33087875 NCBI chr19:51,246,514...51,258,894 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISO
IBA
UniProtKB:Q9JK66 (PMID:20457763)
GO_REF:0000033
RGD
GO_Central
PMID:20457763 GO_REF:0000033 NCBI chr10:35,026,598...35,037,750 JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:33096711)
(PMID:25919711)
RGD PMID:25919711 PMID:33096711 NCBI chr  X:152,065,539...152,076,178 JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of ISO MGI:5319187 (PMID:22044588) RGD PMID:22044588 NCBI chr 4:161,613,306...161,632,248 JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1857263 (PMID:22044588)
Ensembl
RGD
PMID:22044588 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA
(PMID:21855797)
GO_REF:0000033
RGD
GO_Central
PMID:21855797 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844 JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380 JBrowse link
mitophagy by internal vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata18 spermatogenesis associated 18 involved_in ISO
IBA
IEA
(PMID:21264228)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:21264228 GO_REF:0000033 GO_REF:0000107 NCBI chr14:34,531,931...34,558,671 JBrowse link
negative regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:31857589) RGD PMID:31857589 NCBI chr  X:14,550,645...14,572,445 JBrowse link
G Lypla1 lysophospholipase 1 involved_in ISO (PMID:37802024) RGD PMID:37802024 NCBI chr 5:14,679,605...14,708,774 JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (PMID:27994061) RGD PMID:27994061 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238 JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS
(PMID:25495476)
GO_REF:0000024
RGD
GO_Central
PMID:25495476 GO_REF:0000024 NCBI chr 8:36,544,462...36,589,684 JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:25495476)
GO_Central
Ensembl
RGD
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:16,654,572...16,694,628 JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:23916833) RGD PMID:23916833 NCBI chr 7:124,706,246...124,867,234 JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2450997 (PMID:23695157)
GO_Central
RGD
PMID:23695157 GO_REF:0000033 NCBI chr 6:488,923...506,882 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
GO_REF:0000024
(PMID:20181828)
UniProt
RGD
PMID:20181828 GO_REF:0000024 NCBI chr 1:190,643,866...190,645,901 JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS
(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,718,663...54,722,784 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950 JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:68,795,810...68,874,076 JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:185,500,029...185,520,811 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388 JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS
(PMID:31806350)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:62,160,631...62,189,964 JBrowse link
negative regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:28223137) RGD PMID:28223137 NCBI chr10:5,434,725...5,631,246 JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS
(PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:54,718,663...54,722,784 JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO
IBA
(PMID:21062745)
GO_REF:0000033
RGD
GO_Central
PMID:21062745 GO_REF:0000033 NCBI chr11:67,907,534...67,964,347 JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS
(PMID:31806350)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:62,160,631...62,189,964 JBrowse link
G Ubqln4 ubiquilin 4 involved_in ISO (PMID:23459205) RGD PMID:23459205 NCBI chr 2:174,012,726...174,028,062 JBrowse link
negative regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1a adrenoceptor alpha 1A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:27994061)
Ensembl
RGD
PMID:27994061 GO_REF:0000107 NCBI chr15:45,005,648...45,111,416 JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in ISO
IEA
(PMID:18387192)
GO_REF:0000107
RGD
Ensembl
PMID:18387192 GO_REF:0000107 NCBI chr 6:137,534,810...137,555,131 JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO
IEA
ISS
(PMID:21358617)
(PMID:36812915)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21358617 PMID:36812915 GO_REF:0000024 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Becn1 beclin 1 acts_upstream_of_or_within ISO (PMID:27994061) RGD PMID:27994061 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Bmf Bcl2 modifying factor involved_in ISO
IBA
IEA
(PMID:23629966)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:23629966 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:125,953,466...125,974,087 JBrowse link
G Cptp ceramide-1-phosphate transfer protein involved_in ISS
ISO
GO_REF:0000024
(PMID:29164996)
UniProt
RGD
PMID:29164996 GO_REF:0000024 NCBI chr 5:171,757,181...171,761,271 JBrowse link
G Dap death-associated protein involved_in ISO
IBA
(PMID:20537536)
GO_REF:0000033
RGD
GO_Central
PMID:20537536 GO_REF:0000033 NCBI chr 2:82,199,206...82,251,771 JBrowse link
G Dapl1 death associated protein-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:43,960,993...43,980,940 JBrowse link
G Eif4e eukaryotic translation initiation factor 4E NOT|involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 2:229,736,309...229,772,628 JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma 1 involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr11:93,726,322...93,746,387 JBrowse link
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 1:165,181,433...165,193,583 JBrowse link
G Eif4g3 eukaryotic translation initiation factor 4 gamma, 3 NOT|involved_in ISO (PMID:18426977) RGD PMID:18426977 NCBI chr 5:155,481,378...155,702,194 JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:32561715) RGD PMID:32561715 NCBI chr 7:114,987,857...115,058,652 JBrowse link
G Erfe erythroferrone involved_in ISS
ISO
GO_REF:0000024
(PMID:24187137)
UniProt
RGD
PMID:24187137 GO_REF:0000024 NCBI chr 9:99,404,512...99,412,383 JBrowse link
G Foxk1 forkhead box K1 involved_in ISO (PMID:25402684) RGD PMID:25402684 NCBI chr12:12,110,119...12,175,089 JBrowse link
G Foxk2 forkhead box K2 involved_in ISO (PMID:25402684) RGD PMID:25402684 NCBI chr10:107,040,933...107,090,860 JBrowse link
G Gata4 GATA binding protein 4 IMP RGD PMID:19901028 RGD:5131537 NCBI chr15:41,635,572...41,707,252 JBrowse link
G Golga2 golgin A2 involved_in ISO (PMID:22735382) RGD PMID:22735382 NCBI chr 3:15,583,862...15,604,279 JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO MGI:3613033 (PMID:20041218) RGD PMID:20041218 NCBI chr 8:75,796,347...75,965,347 JBrowse link
G Il10 interleukin 10 involved_in ISO (PMID:26962683) RGD PMID:26962683 NCBI chr13:45,024,921...45,029,586 JBrowse link
G Il10ra interleukin 10 receptor subunit alpha involved_in ISO (PMID:26962683) RGD PMID:26962683 NCBI chr 8:54,459,754...54,474,786 JBrowse link
G Il3 interleukin 3 acts_upstream_of_or_within ISO (PMID:15680329) RGD PMID:15680329 NCBI chr10:38,906,460...38,908,810 JBrowse link
G Kdm4a lysine demethylase 4A involved_in ISO (PMID:25660547) RGD PMID:25660547 NCBI chr 5:131,672,754...131,719,534 JBrowse link
G Klhl22 kelch-like family member 22 involved_in ISS
ISO
GO_REF:0000024
(PMID:29769719)
UniProt
RGD
PMID:29769719 GO_REF:0000024 NCBI chr11:83,190,891...83,231,746 JBrowse link
G Lep leptin involved_in ISO
ISS
(PMID:25060689)
GO_REF:0000024
RGD
UniProt
PMID:25060689 GO_REF:0000024 NCBI chr 4:58,626,529...58,640,663 JBrowse link
G Lepr leptin receptor involved_in ISO
IEA
ISS
(PMID:25060689)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:25060689 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:121,409,735...121,593,201 JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member involved_in ISO (PMID:24113155) RGD PMID:24113155 NCBI chr 2:185,884,840...185,912,532 JBrowse link
G Mir223 microRNA 223 IDA RGD PMID:29608885 RGD:21408565 NCBI chr  X:61,141,887...61,141,996 JBrowse link
G Mtmr9 myotubularin related protein 9 involved_in ISO UniProtKB:Q96EF0-1 (PMID:22647598) RGD PMID:22647598 NCBI chr15:37,769,161...37,791,195 JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IMP
ISO
IEA
ISS
(PMID:21258367)
GO_REF:0000117
(PMID:22424946), (PMID:22576015), (PMID:30704899), (PMID:32561715)
GO_REF:0000024
RGD
UniProt
PMID:21258367 PMID:22424946 PMID:22576015 PMID:30704899 PMID:32561715 More... GO_REF:0000024 GO_REF:0000117, RGD:10040964 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Nampt nicotinamide phosphoribosyltransferase IMP RGD PMID:26601421 RGD:13781888 NCBI chr 6:55,152,756...55,189,547 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO
IMP
GO_REF:0000024
(PMID:20181828)
UniProt
RGD
PMID:20181828 PMID:20181828 GO_REF:0000024, RGD:14390062 NCBI chr 1:190,643,866...190,645,901 JBrowse link
G Ptk2 protein tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:27994061) RGD PMID:27994061 NCBI chr 7:107,015,730...107,220,865 JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 involved_in ISO (PMID:23991106) RGD PMID:23991106 NCBI chr 2:191,366,761...191,414,782 JBrowse link
G Rasip1 Ras interacting protein 1 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 1:105,233,599...105,246,028 JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (PMID:23093945) RGD PMID:23093945 NCBI chr20:4,145,539...4,147,985 JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 involved_in ISO (PMID:32561715) RGD PMID:32561715 NCBI chr10:105,376,943...105,675,416 JBrowse link
G Rraga Ras-related GTP binding A involved_in ISO
IBA
IEA
ISS
(PMID:25936802)
(PMID:23263183)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:23263183 PMID:25936802 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:106,159,335...106,160,930 JBrowse link
G RragB Ras-related GTP binding B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:21,560,313...21,610,550 JBrowse link
G Rragc Ras-related GTP binding C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:141,433,014...141,452,546 JBrowse link
G Rragd Ras-related GTP binding D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:52,170,234...52,205,700 JBrowse link
G Rubcn rubicon autophagy regulator involved_in ISO (PMID:19270696) RGD PMID:19270696 NCBI chr11:67,907,534...67,964,347 JBrowse link
G Sirt2 sirtuin 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:20543840)
UniProt
Ensembl
RGD
PMID:20543840 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:93,181,472...93,204,499 JBrowse link
G Slc7a5 solute carrier family 7 member 5 IMP RGD PMID:25049270 RGD:151361107 NCBI chr19:66,843,808...66,872,412 JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA
(PMID:26962683)
GO_REF:0000107
RGD
Ensembl
PMID:26962683 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513 JBrowse link
G Stk38l serine/threonine kinase 38 like involved_in ISO (PMID:35670107) RGD PMID:35670107 NCBI chr 4:181,346,969...181,423,844 JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in IEA
ISO
GO_REF:0000107
(PMID:22613832)
Ensembl
RGD
PMID:22613832 GO_REF:0000107 NCBI chr14:74,172,652...74,272,182 JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO UniProtKB:P05067|UniProtKB:P49768 (PMID:28802038) RGD PMID:28802038 NCBI chr 9:12,647,605...12,654,190 JBrowse link
G Trim27 tripartite motif-containing 27 involved_in ISO (PMID:35670107) RGD PMID:35670107 NCBI chr17:43,538,282...43,550,633 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:30902965) RGD PMID:30902965 NCBI chr 4:146,772,483...146,779,376 JBrowse link
G Washc1 WASH complex subunit 1 involved_in ISO (PMID:23974797) RGD PMID:23974797 NCBI chr 9:105,722,779...105,830,836 JBrowse link
G Wdr6 WD repeat domain 6 involved_in ISO
IEA
(PMID:22354037)
GO_REF:0000107
RGD
Ensembl
PMID:22354037 GO_REF:0000107 NCBI chr 8:109,268,079...109,274,504 JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27911840)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27911840 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:154,800,590...154,926,147 JBrowse link
G Zkscan3 zinc finger with KRAB and SCAN domains 3 involved_in ISO (PMID:23434374) RGD PMID:23434374 NCBI chr17:43,217,168...43,232,828 JBrowse link
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsa cathepsin A involved_in ISO UniProtKB:P10619 (PMID:12505983) RGD PMID:12505983 NCBI chr 3:153,569,106...153,574,983 JBrowse link
G Snca synuclein alpha involved_in ISO
IEA
(PMID:20697033)
GO_REF:0000107
RGD
Ensembl
PMID:20697033 GO_REF:0000107 NCBI chr 4:91,026,474...91,127,444 JBrowse link
negative regulation of macroautophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2429784 (PMID:20705711)
Ensembl
RGD
PMID:20705711 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823 JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:19640926) RGD PMID:19640926 NCBI chr 7:124,706,246...124,867,234 JBrowse link
G Lzts1 leucine zipper tumor suppressor 1 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr16:20,542,756...20,598,204 JBrowse link
G Mtor mechanistic target of rapamycin kinase acts_upstream_of_or_within
involved_in
ISO
IBA
IEA
(PMID:25327288)
(PMID:16714284), (PMID:23274896)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:16714284 PMID:23274896 PMID:25327288 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within ISO MGI:1857409|MGI:1891828 (PMID:17468177) RGD PMID:17468177 NCBI chr18:3,379,482...3,425,100 JBrowse link
G Nrbp2 nuclear receptor binding protein 2 involved_in ISO (PMID:22354037) RGD PMID:22354037 NCBI chr 7:109,679,330...109,685,656 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950 JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 acts_upstream_of_or_within ISO MGI:4044390 (PMID:24797518) RGD PMID:24797518 NCBI chr10:63,407,237...63,417,605 JBrowse link
G Qsox1 quiescin sulfhydryl oxidase 1 involved_in ISO (PMID:24475161) RGD PMID:24475161 NCBI chr13:67,949,780...67,987,434 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388 JBrowse link
G Tsc1 TSC complex subunit 1 involved_in IMP PMID:23435171 ParkinsonsUK-UCL PMID:23435171 RGD:10448950 NCBI chr 3:32,367,434...32,416,565 JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:24599401 RGD:11568679 NCBI chr10:14,125,679...14,160,317 JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:22622177) RGD PMID:22622177 NCBI chr10:103,497,349...103,528,877 JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:5,434,725...5,631,246 JBrowse link
G Fbxl4 F-box and leucine-rich repeat protein 4 involved_in IEA
ISO
GO_REF:0000107
(PMID:38992176)
Ensembl
RGD
PMID:38992176 GO_REF:0000107 NCBI chr 5:40,752,513...40,826,154 JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950 JBrowse link
G Pptc7 protein phosphatase targeting COQ7 involved_in IEA
ISO
GO_REF:0000107
(PMID:38992176)
Ensembl
RGD
PMID:38992176 GO_REF:0000107 NCBI chr12:34,249,963...34,288,339 JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO MGI:1921624 (PMID:24949970) RGD PMID:24949970 NCBI chr 7:838,160...876,869 JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO MGI:5319187 (PMID:22044588) RGD PMID:22044588 NCBI chr 4:161,613,306...161,632,248 JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857263 (PMID:22044588)
Ensembl
RGD
PMID:22044588 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300 JBrowse link
G Tspo translocator protein involved_in ISO (PMID:25470454) RGD PMID:25470454 NCBI chr 7:116,600,214...116,610,461 JBrowse link
G Usp30 ubiquitin specific peptidase 30 IMP RGD PMID:24896179 RGD:13208875 NCBI chr12:42,501,345...42,555,311 JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:24709290) RGD PMID:24709290 NCBI chr 4:117,114,631...117,117,793 JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO
ISS
(PMID:26942284)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:26942284 GO_REF:0000024 NCBI chr 8:68,478,366...68,651,893 JBrowse link
nucleophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:55,624,914...55,653,249 JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306 JBrowse link
pexophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acbd5 acyl-CoA binding domain containing 5 involved_in IEA
ISO
GO_REF:0000002
(PMID:24535825)
InterPro
RGD
PMID:24535825 GO_REF:0000002 NCBI chr17:85,206,178...85,248,909 JBrowse link
G Acbd5l1 acyl-CoA binding domain containing 5 like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:1,449,905...1,452,857 JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412 JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (PMID:26344566) RGD PMID:26344566 NCBI chr 8:62,724,939...62,829,040 JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:26344566), (PMID:27597759)
UniProt
Ensembl
RGD
PMID:26344566 PMID:27597759 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:96,050,380...96,072,928 JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:26344566)
UniProt
Ensembl
RGD
PMID:26344566 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:157,270,671...157,296,432 JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:22,119,677...22,203,546 JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:115,146,660...115,195,326 JBrowse link
G Pjvk pejvakin involved_in ISO (PMID:30936319) RGD PMID:30936319 NCBI chr 3:61,594,644...61,605,051 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:26344566)
UniProt
RGD
PMID:26344566 GO_REF:0000024 NCBI chr10:35,026,598...35,037,750 JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:17,024,876...17,053,306 JBrowse link
piecemeal microautophagy of the nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311 JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,647,069...77,681,028 JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412 JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758 JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456 JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:113,867,218...113,935,534 JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,807,733...19,817,321 JBrowse link
G Atg5 autophagy related 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:76,677,403...76,688,050 JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:10,784,934...10,793,832 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G Snx30 sorting nexin family member 30 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:74,683,902...74,813,013 JBrowse link
G Snx7 sorting nexin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:205,843,164...205,927,737 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844 JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380 JBrowse link
positive regulation of aggrephagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bag3 BAG cochaperone 3 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr 1:192,533,460...192,557,281 JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:22017874)
UniProt
RGD
PMID:22017874 GO_REF:0000024 NCBI chr 3:161,170,295...161,217,073 JBrowse link
G Hspb8 heat shock protein family B (small) member 8 involved_in ISO (PMID:18006506) RGD PMID:18006506 NCBI chr12:45,835,899...45,866,449 JBrowse link
G Htt huntingtin involved_in IEA
ISO
GO_REF:0000107
(PMID:25686248)
Ensembl
RGD
PMID:25686248 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094 JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:31857589)
Ensembl
RGD
PMID:31857589 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640 JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 involved_in ISO (PMID:37802024) RGD PMID:37802024 NCBI chr11:68,277,847...68,289,110 JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:198,777,323...198,856,497 JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:16,223,367...16,264,261 JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:121,882,565...121,884,500 JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597 JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr10:83,202,379...83,231,292 JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA
(PMID:25578879)
GO_REF:0000107
RGD
Ensembl
PMID:25578879 GO_REF:0000107 NCBI chr 7:64,905,322...64,920,380 JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
ISS
IEA
IBA
(PMID:25495476)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
RGD
GO_Central
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154 JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:25495476)
GO_REF:0000107
GO_Central
RGD
Ensembl
PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:96,757,430...96,828,930 JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA
(PMID:24056301)
GO_REF:0000107
RGD
Ensembl
PMID:24056301 GO_REF:0000107 NCBI chr13:33,140,834...33,176,997 JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA
(PMID:21068542)
GO_REF:0000107
RGD
Ensembl
PMID:21068542 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225 JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) RGD PMID:29437695 NCBI chr 2:45,232,325...45,258,345 JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 5:74,683,902...74,813,013 JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA
(PMID:32513819), (PMID:33468622)
GO_REF:0000033
RGD
GO_Central
PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr11:80,965,965...81,023,234 JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 2:205,843,164...205,927,737 JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746 JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
ISS
IEA
(PMID:31271352)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117 JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:95,042,451...95,079,679 JBrowse link
positive regulation of autophagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adrb2 adrenoceptor beta 2 involved_in ISO
IEA
ISS
(PMID:23708524)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:23708524 GO_REF:0000024 GO_REF:0000107 NCBI chr18:57,912,760...57,914,802 JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 involved_in ISO (PMID:25771791) RGD PMID:25771791 NCBI chr10:81,055,467...81,069,298 JBrowse link
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO MGI:5648633 (PMID:24949970) RGD PMID:24949970 NCBI chr10:5,434,725...5,631,246 JBrowse link
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO
IBA
(PMID:26468287)
GO_REF:0000033
RGD
GO_Central
PMID:26468287 GO_REF:0000033 NCBI chr 8:132,289,538...132,356,810 JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:16888103) RGD PMID:16888103 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,405,482...13,440,384 JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:2,640,936...2,684,787 JBrowse link
positive regulation of autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Znrf1 zinc and ring finger 1 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr19:39,496,414...39,581,600 JBrowse link
G Znrf2 zinc and ring finger 2 involved_in ISO FB:FBgn0029911 (PMID:38360932) RGD PMID:38360932 NCBI chr 4:85,274,626...85,358,083 JBrowse link
positive regulation of autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:22293957 RGD:7245565 NCBI chr20:4,152,758...4,155,956 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IMP
ISO
(PMID:24980959)
(PMID:21358617), (PMID:31123703), (PMID:32333458)
RGD PMID:21358617 PMID:24980959 PMID:31123703 PMID:32333458 PMID:25117440 RGD:11552604 NCBI chr 3:98,156,626...98,345,876 JBrowse link
G Atf6 activating transcription factor 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:28747345)
GO_REF:0000107
RGD
Ensembl
PMID:28747345 GO_REF:0000107 NCBI chr13:85,460,312...85,639,959 JBrowse link
G Atg101 autophagy related 101 involved_in IEA
ISO
GO_REF:0000107
(PMID:19225151)
Ensembl
RGD
PMID:19225151 GO_REF:0000107 NCBI chr 7:132,398,477...132,407,643 JBrowse link
G Atg13 autophagy related 13 involved_in ISO (PMID:29487085)
(PMID:19225151)
RGD PMID:19225151 PMID:29487085 NCBI chr 3:77,647,069...77,681,028 JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO (PMID:30208760) RGD PMID:30208760 NCBI chr 9:95,869,839...95,905,354 JBrowse link
G Atg2a autophagy related 2A involved_in ISO (PMID:32483132) RGD PMID:32483132 NCBI chr 1:203,542,559...203,562,242 JBrowse link
G Atg5 autophagy related 5 IMP RGD PMID:30715741 RGD:407445920 NCBI chr20:49,380,835...49,471,826 JBrowse link
G Atg7 autophagy related 7 IDA
IMP
RGD PMID:24674959 PMID:33372336 PMID:22498478 PMID:25639566 RGD:11553823, RGD:407571673, RGD:407532701, RGD:11553824 NCBI chr 4:149,390,000...149,597,534 JBrowse link
G Becn1 beclin 1 involved_in IMP
ISS
ISO
GO_REF:0000024
(PMID:21358617)
UniProt
RGD
PMID:21358617 PMID:21490676 PMID:22498478 PMID:24674959 GO_REF:0000024, RGD:6483070, RGD:407532701, RGD:11553823 NCBI chr10:86,731,649...86,747,002 JBrowse link
G Ccny cyclin Y involved_in ISO (PMID:32098961) RGD PMID:32098961 NCBI chr17:57,385,002...57,512,860 JBrowse link
G Cdk16 cyclin-dependent kinase 16 involved_in ISO
IEA
(PMID:32098961)
GO_REF:0000107
RGD
Ensembl
PMID:32098961 GO_REF:0000107 NCBI chr  X:4,046,330...4,057,825 JBrowse link
G Dapk1 death associated protein kinase 1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr17:3,935,826...4,096,858 JBrowse link
G Dcn decorin involved_in ISO (PMID:23798385) RGD PMID:23798385 NCBI chr 7:34,167,973...34,208,004 JBrowse link
G Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:81,956,777...82,087,392 JBrowse link
G Deptor DEP domain containing MTOR-interacting protein involved_in ISO (PMID:22017875), (PMID:22017876), (PMID:22017877) RGD PMID:22017875 PMID:22017876 PMID:22017877 NCBI chr 7:88,404,745...88,574,065 JBrowse link
G Dhrsx dehydrogenase/reductase X-linked involved_in ISO
IBA
(PMID:25076851)
GO_REF:0000033
RGD
GO_Central
PMID:25076851 GO_REF:0000033 NCBI chr12:16,299,768...16,304,553 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:2,640,936...2,684,787 JBrowse link
G Endog endonuclease G involved_in ISO (PMID:33473107) RGD PMID:33473107 NCBI chr 3:13,449,113...13,451,715 JBrowse link
G Flcn folliculin involved_in ISO
ISS
(PMID:25126726)
GO_REF:0000024
RGD
UniProt
PMID:25126726 GO_REF:0000024 NCBI chr10:45,088,164...45,107,581 JBrowse link
G Foxo1 forkhead box O1 involved_in ISO
ISS
(PMID:20543840)
GO_REF:0000024
RGD
UniProt
PMID:20543840 GO_REF:0000024 NCBI chr 2:138,462,974...138,541,420 JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (PMID:18054315), (PMID:18054316) RGD PMID:18054315 PMID:18054316 NCBI chr20:47,251,968...47,348,254 JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
GO_REF:0000033
(PMID:22539723)
GO_REF:0000107
UniProt
GO_Central
RGD
Ensembl
PMID:22539723 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:89,943,669...89,953,514 JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
RNAcentral:URS0000554A4F_10090 (PMID:22539723), (PMID:26160071)
UniProt
GO_Central
RGD
PMID:22539723 PMID:26160071 GO_REF:0000024 GO_REF:0000033 NCBI chr11:76,004,502...76,154,665 JBrowse link
G Hmgb1 high mobility group box 1 involved_in IMP
ISO
(PMID:20819940) RGD PMID:20819940 PMID:23604926 RGD:10402086 NCBI chr12:11,009,236...11,015,941 JBrowse link
G Ifnb1 interferon beta 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:26451483)
UniProt
RGD
PMID:26451483 GO_REF:0000024 NCBI chr 5:108,066,650...108,067,487 JBrowse link
G Ifng interferon gamma involved_in ISO
ISS
(PMID:23629966), (PMID:26347139)
GO_REF:0000024
RGD
UniProt
PMID:23629966 PMID:26347139 GO_REF:0000024 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Irgm immunity-related GTPase M involved_in ISS
ISO
GO_REF:0000024
(PMID:16888103), (PMID:19620982), (PMID:22874556), (PMID:24751652)
(PMID:16888103), (PMID:25891078), (PMID:28389568), (PMID:29420192)
UniProt
RGD
PMID:16888103 PMID:19620982 PMID:22874556 PMID:24751652 PMID:25891078 More... GO_REF:0000024 NCBI chr10:33,233,513...33,241,594 JBrowse link
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:80,123,925...80,131,881 JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
GO_REF:0000024
(PMID:22539723)
(PMID:30704899)
UniProt
RGD
PMID:22539723 PMID:30704899 GO_REF:0000024 NCBI chr 1:212,325,089...212,332,640 JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO
IBA
(PMID:22012985)
GO_REF:0000033
(PMID:20457918)
RGD
GO_Central
PMID:20457918 PMID:22012985 GO_REF:0000033 NCBI chr 7:124,706,246...124,867,234 JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA RGD PMID:26581593 RGD:12879823 NCBI chr 8:73,578,747...73,650,184 JBrowse link
G Map3k7 mitogen activated protein kinase kinase kinase 7 IMP RGD PMID:35078016 RGD:155804282 NCBI chr 5:51,149,524...51,212,012 JBrowse link
G Mefv MEFV innate immunity regulator, pyrin involved_in ISS
ISO
GO_REF:0000024
(PMID:26347139)
UniProt
RGD
PMID:26347139 GO_REF:0000024 NCBI chr10:11,786,948...11,796,977 JBrowse link
G Mid2 midline 2 involved_in ISO (PMID:26347139) RGD PMID:26347139 NCBI chr  X:104,354,692...104,456,757 JBrowse link
G Mir222 microRNA 222 IMP RGD PMID:33792838 RGD:152025536 NCBI chr  X:6,022,621...6,022,723 JBrowse link
G Mtdh metadherin involved_in ISO
IEA
(PMID:21127263)
GO_REF:0000107
RGD
Ensembl
PMID:21127263 GO_REF:0000107 NCBI chr 7:67,192,592...67,250,819 JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (PMID:19898471) RGD PMID:19898471 NCBI chr 4:85,391,142...85,442,281 JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:19898471), (PMID:19966812) RGD PMID:19898471 PMID:19966812 NCBI chr19:34,555,832...34,596,281 JBrowse link
G Nprl2 NPR2-like, GATOR1 complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:117,094,443...117,097,639 JBrowse link
G Nprl3 NPR3-like, GATOR1 complex subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,859,739...15,900,261 JBrowse link
G Optn optineurin involved_in ISO (PMID:21617041) RGD PMID:21617041 NCBI chr17:73,209,572...73,260,251 JBrowse link
G Ormdl3 ORMDL sphingolipid biosynthesis regulator 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:6369059 (PMID:28747345)
Ensembl
RGD
PMID:28747345 GO_REF:0000107 NCBI chr10:84,086,317...84,092,673 JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha involved_in ISO (PMID:28910396) RGD PMID:28910396 NCBI chr 1:180,012,248...180,117,786 JBrowse link
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:17476689) RGD PMID:17476689 NCBI chr  X:17,289,509...17,294,778 JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO
IBA
(PMID:22115783)
GO_REF:0000033
RGD
GO_Central
PMID:22115783 GO_REF:0000033 NCBI chr 1:90,908,304...90,915,862 JBrowse link
G Plk2 polo-like kinase 2 involved_in ISO
IEA
(PMID:23983262)
GO_REF:0000107
RGD
Ensembl
PMID:23983262 GO_REF:0000107 NCBI chr 2:43,702,536...43,708,305 JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:21258367)
(PMID:22012985), (PMID:25891078), (PMID:26103054)
UniProt
GO_Central
RGD
PMID:21258367 PMID:22012985 PMID:25891078 PMID:26103054 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:55,967,766...56,003,450 JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
GO_REF:0000033
(PMID:21258367)
GO_REF:0000024
Ensembl
GO_Central
RGD
UniProt
PMID:21258367 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:125,036,945...125,109,010 JBrowse link
G Prkd1 protein kinase D1 involved_in ISO (PMID:22095288) RGD PMID:22095288 NCBI chr 6:73,460,640...73,774,433 JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO (PMID:19225151) RGD PMID:19225151 NCBI chr 5:13,161,648...13,225,560 JBrowse link
G Rnf152 ring finger protein 152 involved_in ISO
IBA
ISS
(PMID:25936802)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:25936802 GO_REF:0000024 GO_REF:0000033 NCBI chr13:21,838,634...21,918,000 JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in ISO
IEA
UniProtKB:Q14457 (PMID:27853422)
GO_REF:0000107
RGD
Ensembl
PMID:27853422 GO_REF:0000107 NCBI chr18:1,387,360...1,509,218 JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:36359729) RGD PMID:36359729 NCBI chr 8:119,390,207...119,475,863 JBrowse link
G Sh3bp4 SH3-domain binding protein 4 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22575674)
UniProt
Ensembl
RGD
PMID:22575674 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:89,660,156...89,739,163 JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO (PMID:17891140) RGD PMID:17891140 NCBI chr 2:236,411,194...236,445,225 JBrowse link
G Slc35d3 solute carrier family 35, member D3 involved_in ISO (PMID:27171858) RGD PMID:27171858 NCBI chr 1:14,565,482...14,573,581 JBrowse link
G Smo smoothened, frizzled class receptor IDA RGD PMID:31221056 RGD:150521664 NCBI chr 4:59,311,084...59,341,280