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ONTOLOGY REPORT - ANNOTATIONS

Term:phagocytosis
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Accession:GO:0006909 term browser browse the term
Definition:A vesicle-mediated transport process that results in the engulfment of external particulate material by phagocytes and their delivery to the lysosome. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.
Synonyms:xref: Reactome:R-HSA-9664417 "Leishmania phagocytosis";   Wikipedia:Phagocytosis
 never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:10,342,092...10,362,094
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO
IEA		 MGI:2153718|MGI:87860 (PMID:22665498), (PMID:23100514)
GO_REF:0000107		 RGD
Ensembl		 PMID:22665498 PMID:23100514 GO_REF:0000107 NCBI chr 3:35,377,587...35,480,843
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:2153719|MGI:87859 (PMID:22665498), (PMID:23100514) RGD PMID:22665498 PMID:23100514 NCBI chr13:71,223,902...71,319,770
Ensembl chr13:68,673,722...68,839,742 		JBrowse link
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of ISO MGI:88141 (PMID:17116687) RGD PMID:17116687 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,262,516...61,461,505 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:108,293,681...108,365,892
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Ager advanced glycosylation end product-specific receptor involved_in IEA
ISO		 GO_REF:0000107
(PMID:35974093)		 Ensembl
RGD		 PMID:35974093 GO_REF:0000107 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Anxa1 annexin A1 involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:12475898)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:12475898 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Anxa11 annexin A11 involved_in ISO
IBA		 (PMID:9188810)
GO_REF:0000033		 RGD
GO_Central		 PMID:9188810 GO_REF:0000033 NCBI chr16:1,412,373...1,457,814
Ensembl chr16:1,410,756...1,457,797 		JBrowse link
G Anxa3 annexin A3 involved_in ISO (PMID:9497492) RGD PMID:9497492 NCBI chr14:13,031,675...13,085,678
Ensembl chr14:12,719,795...12,781,617 		JBrowse link
G Axl Axl receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:21501828)
MGI:104294|MGI:96965 (PMID:19602523)
GO_REF:0000033		 RGD
GO_Central		 PMID:19602523 PMID:21501828 GO_REF:0000033 NCBI chr 1:90,392,864...90,424,123
Ensembl chr 1:81,265,088...81,296,265 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of ISO MGI:107771 (PMID:17116687) RGD PMID:17116687 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,471,668...13,597,016 		JBrowse link
G Bltp1 bridge-like lipid transfer protein family member 1 involved_in ISO (PMID:31540829) RGD PMID:31540829 NCBI chr 2:121,636,181...121,852,802
Ensembl chr 2:119,708,209...119,924,695 		JBrowse link
G Cd302 CD302 molecule acts_upstream_of_or_within ISO
IEA		 (PMID:17947679)
GO_REF:0000107		 RGD
Ensembl		 PMID:17947679 GO_REF:0000107 NCBI chr 3:44,722,324...44,756,045
Ensembl chr 3:44,722,325...44,756,045 		JBrowse link
G Cdc42se1 CDC42 small effector 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:182,805,691...182,813,520
Ensembl chr 2:182,804,925...182,814,028 		JBrowse link
G Cdc42se2 CDC42 small effector 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:38,836,549...38,905,056
Ensembl chr10:38,836,555...38,905,059
Ensembl chr 1:38,836,555...38,905,059 		JBrowse link
G Ceacam4 CEA cell adhesion molecule 4 involved_in ISO (PMID:25567962) RGD PMID:25567962 NCBI chr 1:80,376,667...80,382,943
Ensembl chr 1:80,376,648...80,382,915 		JBrowse link
G Cebpe CCAAT/enhancer binding protein epsilon acts_upstream_of_or_within ISO
IEA		 MGI:2178607 (PMID:10216107), (PMID:11861297)
GO_REF:0000107		 RGD
Ensembl		 PMID:10216107 PMID:11861297 GO_REF:0000107 NCBI chr15:32,139,716...32,141,476
Ensembl chr15:28,169,704...28,171,814 		JBrowse link
G Cnn2 calponin 2 acts_upstream_of ISO MGI:3820422 (PMID:18617524) RGD PMID:18617524 NCBI chr 7:10,363,141...10,370,312
Ensembl chr 7:9,712,516...9,719,656 		JBrowse link
G Coro1a coronin 1A involved_in ISO
IEA		 (PMID:17442961)
GO_REF:0000107		 RGD
Ensembl		 PMID:17442961 GO_REF:0000107 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Cryba1 crystallin, beta A1 IMP RGD PMID:21266465 RGD:126925759 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Dnm2 dynamin 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2679454 (PMID:17932563)
GO_REF:0000107		 RGD
Ensembl		 PMID:17932563 GO_REF:0000107 NCBI chr12:15,824,431...15,858,266
Ensembl chr12:10,705,874...10,744,573 		JBrowse link
G Elane elastase, neutrophil expressed involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2182771 (PMID:15034066)		 GO_Central
Ensembl
RGD		 PMID:15034066 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:10,467,877...10,469,725
Ensembl chr 7:9,817,252...9,819,100 		JBrowse link
G Elmo1 engulfment and cell motility 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11595183)
GO_REF:0000043		 RGD
UniProt		 PMID:11595183 GO_REF:0000043 NCBI chr17:48,982,188...49,518,525
Ensembl chr17:44,286,485...44,822,788 		JBrowse link
G Elmo2 engulfment and cell motility 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:174,442,965...174,716,723
Ensembl chr 3:154,023,661...154,061,185 		JBrowse link
G Elmo3 engulfment and cell motility 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:33,181,952...33,186,399
Ensembl chr19:33,182,036...33,186,410 		JBrowse link
G Fcgr2b Fc gamma receptor 2B involved_in
acts_upstream_of		 ISO (PMID:2142460)
MGI:1857166 (PMID:12385742)		 RGD PMID:2142460 PMID:12385742 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
IEA
ISS		 (PMID:21501828)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21501828 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Gata2 GATA binding protein 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Gulp1 GULP PTB domain containing engulfment adaptor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:54,114,823...54,391,058
Ensembl chr 9:46,622,669...46,899,005 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2384049 (PMID:8125254)
GO_REF:0000043		 RGD
UniProt		 PMID:8125254 GO_REF:0000043 NCBI chr 3:162,031,833...162,074,933
Ensembl chr 3:141,571,587...141,614,693 		JBrowse link
G Icam5 intercellular adhesion molecule 5 acts_upstream_of_or_within ISO
IEA		 (PMID:15452145)
GO_REF:0000107		 RGD
Ensembl		 PMID:15452145 GO_REF:0000107 NCBI chr 8:27,843,563...27,851,767
Ensembl chr 8:19,568,600...19,575,588 		JBrowse link
G Irf8 interferon regulatory factor 8 acts_upstream_of_or_within ISO
IEA		 MGI:1926332 (PMID:18045875)
GO_REF:0000107		 RGD
Ensembl		 PMID:18045875 GO_REF:0000107 NCBI chr19:65,699,284...65,721,066
Ensembl chr19:48,790,588...48,811,829 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:8986723) RGD PMID:8986723 NCBI chr 1:192,089,496...192,139,947
Ensembl chr 1:182,659,000...182,709,503 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in IMP PMID:17410128 ARUK-UCL PMID:17410128 RGD:13673830 NCBI chr19:73,602,277...73,650,271
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Knl1 kinetochore scaffold 1 acts_upstream_of_or_within ISO (PMID:31197172) RGD PMID:31197172 NCBI chr 3:126,483,498...126,545,774
Ensembl chr 3:106,029,661...106,091,915 		JBrowse link
G Ldlr low density lipoprotein receptor involved_in IEA
ISO		 GO_REF:0000107
(PMID:22383525)		 Ensembl
RGD		 PMID:22383525 GO_REF:0000107 NCBI chr 8:28,546,191...28,569,075
Ensembl chr 8:20,270,041...20,294,580 		JBrowse link
G Lep leptin involved_in IDA
IEA
ISO
ISS		 PMID:9438411
GO_REF:0000107
(PMID:9438411)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:9438411 PMID:9438411 GO_REF:0000024 GO_REF:0000107, RGD:11041004 NCBI chr 4:58,626,529...58,640,663
Ensembl chr 4:57,661,131...57,675,262 		JBrowse link
G Lepr leptin receptor involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:9438411)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:9438411 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:121,409,735...121,593,201
Ensembl chr 5:116,289,823...116,475,908 		JBrowse link
G Letmd1 LETM1 domain containing 1 acts_upstream_of_or_within ISO
IEA		 (PMID:31980577)
GO_REF:0000107		 RGD
Ensembl		 PMID:31980577 GO_REF:0000107 NCBI chr 7:133,461,920...133,476,592
Ensembl chr 7:131,584,259...131,597,796 		JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO
IBA
IEA		 (PMID:23152628)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23152628 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:65,265,639...65,346,196
Ensembl chr 7:63,380,356...63,460,910 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase involved_in IMP
IEA
IBA
ISO
IDA		 GO_REF:0000107
GO_REF:0000033
(PMID:19204785)		 Ensembl
GO_Central
RGD		 PMID:19204785 PMID:11861639 PMID:11861639 GO_REF:0000033 GO_REF:0000107, RGD:1299193, RGD:1299193 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mesd mesoderm development LRP chaperone involved_in ISS
ISO		 GO_REF:0000024
(PMID:27184668)		 UniProt
RGD		 PMID:27184668 GO_REF:0000024 NCBI chr 1:147,275,904...147,289,134
Ensembl chr 1:137,874,242...137,879,999 		JBrowse link
G Mex3b mex-3 RNA binding family member B acts_upstream_of ISO MGI:5638674 (PMID:24803656) RGD PMID:24803656 NCBI chr 1:136,855,130...136,859,365
Ensembl chr 1:136,855,130...136,859,354 		JBrowse link
G Mst1r macrophage stimulating 1 receptor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:117,471,928...117,491,059
Ensembl chr 8:108,597,299...108,612,455 		JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor involved_in ISO
IEA		 (PMID:30883606)
GO_REF:0000107		 RGD
Ensembl		 PMID:30883606 GO_REF:0000107 NCBI chr 8:127,952,161...127,956,230
Ensembl chr 8:119,074,437...119,079,415 		JBrowse link
G Myo1g myosin IG acts_upstream_of_or_within ISO
IEA		 MGI:5581464 (PMID:24310084)
GO_REF:0000107		 RGD
Ensembl		 PMID:24310084 GO_REF:0000107 NCBI chr14:85,600,619...85,615,760
Ensembl chr14:81,386,701...81,401,843 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:2155422 (PMID:12743369)
GO_REF:0000107		 RGD
Ensembl		 PMID:12743369 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G Ncf2 neutrophil cytosolic factor 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:67,505,492...67,536,015
Ensembl chr13:64,955,503...64,986,277 		JBrowse link
G Ncf4 neutrophil cytosolic factor 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:111,705,926...111,723,893
Ensembl chr 7:109,826,020...109,843,389 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:32183151) RGD PMID:32183151 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of ISO MGI:3529594 (PMID:19139201) RGD PMID:19139201 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Ns5atp4 NS5A transactivated protein 4 involved_in ISO
IBA
ISS		 (PMID:31540829)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:31540829 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:175,494,406...175,507,281
Ensembl chr 2:175,494,304...175,510,663 		JBrowse link
G Ns5atp4-ps3 NS5A transactivated protein 4, pseudogene 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:34,465,715...34,466,470
Ensembl chr 3:34,465,715...34,466,470 		JBrowse link
G P2ry6 pyrimidinergic receptor P2Y6 involved_in IMP PMID:17410128 ARUK-UCL PMID:17410128 RGD:13673830 NCBI chr 1:164,707,188...164,742,689
Ensembl chr 1:155,295,111...155,330,808 		JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 involved_in ISO
IEA		 (PMID:12110892)
GO_REF:0000107		 RGD
Ensembl		 PMID:12110892 GO_REF:0000107 NCBI chr10:92,090,263...92,152,002
Ensembl chr10:91,590,521...91,652,116 		JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:117,103,643...117,177,411
Ensembl chr 2:115,174,984...115,249,032 		JBrowse link
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:9,048,135...9,076,751
Ensembl chr 7:8,397,406...8,425,988 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
G Pld4 phospholipase D family, member 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:22102906)		 GO_Central
RGD		 PMID:22102906 GO_REF:0000033 NCBI chr 6:137,639,948...137,647,462
Ensembl chr 6:131,818,860...131,826,376 		JBrowse link
G Rab11fip2 RAB11 family interacting protein 2 involved_in ISO
IEA		 (PMID:30883606)
GO_REF:0000107		 RGD
Ensembl		 PMID:30883606 GO_REF:0000107 NCBI chr 1:268,908,825...269,080,691
Ensembl chr 1:258,923,873...259,093,752 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:6,720,057...6,749,456
Ensembl chr 9:6,484,469...6,512,873 		JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:72,544,798...72,546,910
Ensembl chr14:68,332,558...68,333,205 		JBrowse link
G Rap1gap Rap1 GTPase-activating protein acts_upstream_of ISO
IEA		 (PMID:24803656)
GO_REF:0000107		 RGD
Ensembl		 PMID:24803656 GO_REF:0000107 NCBI chr 5:155,157,511...155,222,622
Ensembl chr 5:149,892,019...149,939,253 		JBrowse link
G Sh3bp1 SH3-domain binding protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:112,338,087...112,350,659
Ensembl chr 7:110,457,710...110,470,201 		JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857755 (PMID:18045875)
GO_REF:0000107		 RGD
Ensembl		 PMID:18045875 GO_REF:0000107 NCBI chr 9:83,406,327...83,417,252
Ensembl chr 9:75,957,316...75,968,101 		JBrowse link
G Slc48a1 solute carrier family 48 member 1 involved_in ISO
IEA		 MGI:6711492 (PMID:23395172), (PMID:31571584)
GO_REF:0000107		 RGD
Ensembl		 PMID:23395172 PMID:31571584 GO_REF:0000107 NCBI chr 7:128,915,136...128,923,929
Ensembl chr 7:128,915,195...128,923,024 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21041449)		 UniProt
RGD		 PMID:21041449 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Tafa4 TAFA chemokine like family member 4 involved_in IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:25109685)		 GO_Central
Ensembl
RGD		 PMID:25109685 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:130,994,166...131,228,032
Ensembl chr 4:129,437,467...129,671,249 		JBrowse link
G Ticam2 TIR domain containing adaptor molecule 2 involved_in ISO (PMID:30883606) RGD PMID:30883606 NCBI chr18:41,481,057...41,498,065
Ensembl chr18:39,294,453...39,311,462 		JBrowse link
G Tlr4 toll-like receptor 4 involved_in ISO
IEA		 (PMID:30883606)
GO_REF:0000107		 RGD
Ensembl		 PMID:30883606 GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Tm9sf4 transmembrane 9 superfamily member 4 involved_in ISO (PMID:19893578) RGD PMID:19893578 NCBI chr 3:162,086,758...162,135,620
Ensembl chr 3:141,627,346...141,675,386 		JBrowse link
G Tub TUB bipartite transcription factor involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tusc2 tumor suppressor 2, mitochondrial calcium regulator acts_upstream_of_or_within ISO
IEA		 MGI:3706236 (PMID:24042119)
GO_REF:0000107		 RGD
Ensembl		 PMID:24042119 GO_REF:0000107 NCBI chr 8:117,115,479...117,118,697
Ensembl chr 8:108,236,838...108,240,056 		JBrowse link
G Tyro3 TYRO3 protein tyrosine kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:127,231,468...127,254,806
Ensembl chr 3:106,777,635...106,797,142 		JBrowse link
G Unc13d unc-13 homolog D acts_upstream_of_or_within ISO MGI:3628822 (PMID:17420270) RGD PMID:17420270 NCBI chr10:101,296,755...101,311,513
Ensembl chr10:101,296,776...101,311,687 		JBrowse link
G Vav1 vav guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:1888518 (PMID:15249579)
GO_REF:0000107		 RGD
Ensembl		 PMID:15249579 GO_REF:0000107 NCBI chr 9:2,248,856...2,295,905
Ensembl chr 9:2,157,900...2,208,937 		JBrowse link
apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in ISO
IEA		 (PMID:24509909)
GO_REF:0000107		 RGD
Ensembl		 PMID:24509909 GO_REF:0000107 NCBI chr 7:108,293,681...108,365,892
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Alox15 arachidonate 15-lipoxygenase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:22503541)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:22503541 GO_REF:0000024 GO_REF:0000107 NCBI chr10:55,559,060...55,567,535
Ensembl chr10:55,060,412...55,068,874 		JBrowse link
G Axl Axl receptor tyrosine kinase acts_upstream_of_or_within
involved_in		 ISO MGI:104294|MGI:2387750|MGI:96965 (PMID:17442946), (PMID:18159085), (PMID:18804096), (PMID:23878224)
UniProtKB:Q60805 (PMID:18159085)		 RGD PMID:17442946 PMID:18159085 PMID:18804096 PMID:23878224 NCBI chr 1:90,392,864...90,424,123
Ensembl chr 1:81,265,088...81,296,265 		JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within ISO (PMID:15647754) RGD PMID:15647754 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Gas6 growth arrest specific 6 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18159085)
(PMID:21501828)		 UniProt
Ensembl
RGD		 PMID:18159085 PMID:21501828 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO
ISS		 (PMID:18768881)
GO_REF:0000024		 RGD
UniProt		 PMID:18768881 GO_REF:0000024 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Itgav integrin subunit alpha V involved_in
acts_upstream_of_or_within		 ISO
IEA		 UniProtKB:P43406 (PMID:20826760)
GO_REF:0000107
UniProtKB:P06756 (PMID:20826760)
(PMID:15647754)		 RGD
Ensembl		 PMID:15647754 PMID:20826760 GO_REF:0000107 NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO
IEA		 UniProtKB:O54890 (PMID:20826760)
UniProtKB:P05106 (PMID:20826760)
GO_REF:0000107		 RGD
Ensembl		 PMID:20826760 GO_REF:0000107 NCBI chr10:90,009,927...90,067,787
Ensembl chr10:89,509,989...89,564,679 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within
NOT|acts_upstream_of_or_within		 ISO
IEA		 MGI:3043930 (PMID:14715629), (PMID:15647754)
GO_REF:0000107
MGI:3580706 (PMID:15345036)		 RGD
Ensembl		 PMID:14715629 PMID:15345036 PMID:15647754 GO_REF:0000107 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Lrp1 LDL receptor related protein 1 acts_upstream_of_or_within ISO (PMID:15647754) RGD PMID:15647754 NCBI chr 7:65,265,639...65,346,196
Ensembl chr 7:63,380,356...63,460,910 		JBrowse link
G Marco macrophage receptor with collagenous structure acts_upstream_of_or_within ISO
IEA		 (PMID:19201851)
GO_REF:0000107		 RGD
Ensembl		 PMID:19201851 GO_REF:0000107 NCBI chr13:34,169,011...34,210,340
Ensembl chr13:31,616,278...31,648,521 		JBrowse link
G Megf10 multiple EGF-like domains 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:52,803,292...52,953,431
Ensembl chr18:50,605,656...50,754,456 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:104294|MGI:1347244|MGI:2387768 (PMID:17442946), (PMID:18159085), (PMID:23878224), (PMID:29440417)
GO_REF:0000107
(PMID:18159085)		 RGD
Ensembl		 PMID:17442946 PMID:18159085 PMID:23878224 PMID:29440417 GO_REF:0000107 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing involved_in ISO
IEA		 (PMID:20826760)
GO_REF:0000107		 RGD
Ensembl		 PMID:20826760 GO_REF:0000107 NCBI chr 1:142,474,027...142,489,431
Ensembl chr 1:133,064,665...133,080,073 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 involved_in ISO
IEA		 (PMID:19628791)
GO_REF:0000107		 RGD
Ensembl		 PMID:19628791 GO_REF:0000107 NCBI chr 3:97,614,616...97,632,053
Ensembl chr 3:77,158,808...77,168,722 		JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO
IEA		 (PMID:19628791)
GO_REF:0000107		 RGD
Ensembl		 PMID:19628791 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Tgm2 transglutaminase 2 involved_in ISO (PMID:19628791) RGD PMID:19628791 NCBI chr 3:167,192,612...167,221,845
Ensembl chr 3:146,772,687...146,801,981 		JBrowse link
G Timd4 T-cell immunoglobulin and mucin domain containing 4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:29440417)		 GO_Central
RGD		 PMID:29440417 GO_REF:0000033 NCBI chr10:31,686,994...31,723,095
Ensembl chr10:31,185,731...31,220,966 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:15728241) RGD PMID:15728241 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO
IEA		 MGI:3052754 (PMID:24218451)
GO_REF:0000107		 RGD
Ensembl		 PMID:24218451 GO_REF:0000107 NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Tyro3 TYRO3 protein tyrosine kinase involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
UniProtKB:Q60805 (PMID:18159085)
MGI:1347244|MGI:96965 (PMID:17442946), (PMID:18159085)		 UniProt
Ensembl
RGD		 PMID:17442946 PMID:18159085 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:127,231,468...127,254,806
Ensembl chr 3:106,777,635...106,797,142 		JBrowse link
G Tyrobp transmembrane immune signaling adaptor Tyrobp involved_in ISS
ISO		 GO_REF:0000024
(PMID:15728241)		 UniProt
RGD		 PMID:15728241 GO_REF:0000024 NCBI chr 1:94,800,372...94,804,307
Ensembl chr 1:85,672,994...85,676,848 		JBrowse link
cytoskeletal rearrangement involved in phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Timd4 T-cell immunoglobulin and mucin domain containing 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:31,686,994...31,723,095
Ensembl chr10:31,185,731...31,220,966 		JBrowse link
engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in ISO
IBA
IEA		 (PMID:24509909)
GO_REF:0000033
(PMID:17960134)
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:17960134 PMID:24509909 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:108,293,681...108,365,892
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA		 (PMID:22393062)
GO_REF:0000107		 RGD
Ensembl		 PMID:22393062 GO_REF:0000107 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Megf10 multiple EGF-like domains 10 acts_upstream_of_or_within ISO
IEA		 MGI:4454190 (PMID:27170117)
GO_REF:0000107		 RGD
Ensembl		 PMID:27170117 GO_REF:0000107 NCBI chr18:52,803,292...52,953,431
Ensembl chr18:50,605,656...50,754,456 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO (PMID:20691665) RGD PMID:20691665 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Thbs1 thrombospondin 1 involved_in ISO
IEA		 (PMID:16882710)
GO_REF:0000107		 RGD
Ensembl		 PMID:16882710 GO_REF:0000107 NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Xkr4 XK related 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:15,896,818...16,297,733
Ensembl chr 5:15,895,863...16,282,962 		JBrowse link
G Xkr6 XK related 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:37,857,096...38,059,699
Ensembl chr15:37,857,096...38,059,682 		JBrowse link
G Xkr7 XK related 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:141,500,908...141,525,062
Ensembl chr 3:141,501,284...141,525,062 		JBrowse link
G Xkr8 XK related 8 involved_in ISO
IEA
IBA		 (PMID:23845944)
GO_REF:0000107
(PMID:29440417), (PMID:31712393)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:23845944 PMID:29440417 PMID:31712393 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:144,938,061...144,945,195
Ensembl chr 5:144,938,064...144,945,195 		JBrowse link
Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcer2 Fc epsilon receptor II involved_in ISO (PMID:7544003) RGD PMID:7544003 NCBI chr12:6,540,697...6,552,364
Ensembl chr12:1,742,815...1,754,476 		JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:7544003) RGD PMID:7544003 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Myo1g myosin IG involved_in ISO
IEA		 (PMID:23038771)
GO_REF:0000107		 RGD
Ensembl		 PMID:23038771 GO_REF:0000107 NCBI chr14:85,600,619...85,615,760
Ensembl chr14:81,386,701...81,401,843 		JBrowse link
G Nos2 nitric oxide synthase 2 involved_in ISO (PMID:7544003) RGD PMID:7544003 NCBI chr10:64,313,335...64,349,221
Ensembl chr10:63,815,308...63,851,210 		JBrowse link
negative regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300lf Cd300 molecule-like family member F involved_in ISS
ISO		 GO_REF:0000024
(PMID:26768664)		 UniProt
RGD		 PMID:26768664 GO_REF:0000024 NCBI chr10:100,858,924...100,875,111
Ensembl chr10:100,359,943...100,376,041 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:20826760) RGD PMID:20826760 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
negative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 involved_in ISO (PMID:25568335) RGD PMID:25568335 NCBI chr16:2,125,234...2,173,457
Ensembl chr16:2,121,255...2,166,692 		JBrowse link
negative regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing involved_in ISO
IEA
ISS		 (PMID:10961870)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10961870 GO_REF:0000024 GO_REF:0000107 NCBI chr11:91,226,524...91,240,244
Ensembl chr11:77,721,912...77,735,564 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within ISO
IEA		 (PMID:24035364)
GO_REF:0000107		 RGD
Ensembl		 PMID:24035364 GO_REF:0000107 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO
IEA		 (PMID:24035364)
GO_REF:0000107		 RGD
Ensembl		 PMID:24035364 GO_REF:0000107 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO MGI:1934631|MGI:3587769 (PMID:24035364) RGD PMID:24035364 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Cd47 Cd47 molecule involved_in IMP PMID:21401967 ARUK-UCL PMID:21401967 RGD:13792533 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Cnn2 calponin 2 acts_upstream_of_or_within ISO MGI:3820422 (PMID:18617524) RGD PMID:18617524 NCBI chr 7:10,363,141...10,370,312
Ensembl chr 7:9,712,516...9,719,656 		JBrowse link
G Csk C-terminal Src kinase IDA RGD PMID:10884975 RGD:5134370 NCBI chr 8:66,925,650...66,944,861
Ensembl chr 8:58,029,749...58,048,292 		JBrowse link
G Dysf dysferlin acts_upstream_of_or_within ISO
IEA		 (PMID:18276788)
GO_REF:0000107
MGI:1857883 (PMID:18276788)		 RGD
Ensembl		 PMID:18276788 GO_REF:0000107 NCBI chr 4:118,048,460...118,248,273
Ensembl chr 4:116,490,616...116,690,709 		JBrowse link
G Fcgr2b Fc gamma receptor 2B acts_upstream_of_or_within ISO MGI:1857166 (PMID:12385742) RGD PMID:12385742 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Mir181b1 microRNA 181b-1 involved_in ISO ENSEMBL_GeneID:ENSG00000171049 (PMID:25505240) RGD PMID:25505240 NCBI chr13:52,037,228...52,037,337
Ensembl chr13:49,485,688...49,485,797 		JBrowse link
G Mir181b2 microRNA 181b-2 involved_in ISO ENSEMBL_GeneID:ENSG00000171049 (PMID:25505240) RGD PMID:25505240 NCBI chr 3:43,026,666...43,026,753
Ensembl chr 3:22,616,948...22,617,035 		JBrowse link
G Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29378918)		 UniProt
Ensembl
RGD		 PMID:29378918 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:28,259,821...28,307,225
Ensembl chr 5:28,259,760...28,307,225 		JBrowse link
G Plscr1 phospholipid scramblase 1 involved_in ISO
ISS		 (PMID:26745724)
GO_REF:0000024		 RGD
UniProt		 PMID:26745724 GO_REF:0000024 NCBI chr 8:101,662,512...101,684,474
Ensembl chr 8:92,784,356...92,804,692 		JBrowse link
G Prtn3 proteinase 3 involved_in ISO (PMID:17712045) RGD PMID:17712045 NCBI chr 7:10,472,750...10,482,037
Ensembl chr 7:9,822,122...9,831,944 		JBrowse link
G Pten phosphatase and tensin homolog IMP RGD PMID:18056380 RGD:2292524 NCBI chr 1:240,043,707...240,110,330
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
G Rack1 receptor for activated C kinase 1 involved_in ISO
ISS		 (PMID:21347310)
GO_REF:0000024		 RGD
UniProt		 PMID:21347310 GO_REF:0000024 NCBI chr10:33,668,560...33,676,031
Ensembl chr10:33,169,169...33,174,975 		JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:12654779 RGD:4144053 NCBI chr16:17,080,575...17,093,047
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Siglec1 sialic acid binding Ig like lectin 1 involved_in ISO (PMID:22630829) RGD PMID:22630829 NCBI chr 3:138,740,171...138,759,966
Ensembl chr 3:118,287,988...118,306,850 		JBrowse link
G Sirpa signal-regulatory protein alpha involved_in IMP
ISO		 PMID:21401967
(PMID:21401967)		 RGD PMID:21401967 PMID:21401967 RGD:13792533 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Snx3 sorting nexin 3 involved_in ISO
ISS		 (PMID:23237080)
GO_REF:0000024		 RGD
UniProt		 PMID:23237080 GO_REF:0000024 NCBI chr20:47,574,051...47,607,577
Ensembl chr20:45,992,720...46,025,379 		JBrowse link
G Syt11 synaptotagmin 11 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23303671), (PMID:28686317)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23303671 PMID:28686317 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:176,503,845...176,530,354
Ensembl chr 2:174,206,191...174,231,964 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 IDA RGD PMID:16272332 RGD:1579756 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tlr2 toll-like receptor 2 involved_in ISO UniProtKB:P05067|UniProtKB:P49768 (PMID:22198949) RGD PMID:22198949 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
negative regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd300a Cd300a molecule involved_in ISO (PMID:22302738) RGD PMID:22302738 NCBI chr10:100,428,826...100,441,693
Ensembl chr10:99,929,801...99,942,674 		JBrowse link
neutrophil clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISO
IEA		 (PMID:21957127)
GO_REF:0000107		 RGD
Ensembl		 PMID:21957127 GO_REF:0000107 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Axl Axl receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:96965 (PMID:23878224) RGD PMID:23878224 NCBI chr 1:90,392,864...90,424,123
Ensembl chr 1:81,265,088...81,296,265 		JBrowse link
G Ccr2 C-C motif chemokine receptor 2 acts_upstream_of_or_within ISO MGI:2158345 (PMID:9342361) RGD PMID:9342361 NCBI chr 8:132,611,883...132,619,106
Ensembl chr 8:123,734,430...123,742,100 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO
ISS		 (PMID:18768881)
GO_REF:0000024		 RGD
UniProt		 PMID:18768881 GO_REF:0000024 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within ISO
IEA		 MGI:1347244 (PMID:23878224)
GO_REF:0000107		 RGD
Ensembl		 PMID:23878224 GO_REF:0000107 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Xkr8 XK related 8 involved_in ISO
IEA		 (PMID:29440417)
GO_REF:0000107		 RGD
Ensembl		 PMID:29440417 GO_REF:0000107 NCBI chr 5:144,938,061...144,945,195
Ensembl chr 5:144,938,064...144,945,195 		JBrowse link
opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd47 Cd47 molecule acts_upstream_of_or_within ISO (PMID:14634079) RGD PMID:14634079 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (PMID:14726497) RGD PMID:14726497 NCBI chr 2:150,487,513...150,493,323
Ensembl chr 2:150,487,513...150,493,323 		JBrowse link
G Sftpa1 surfactant protein A1 involved_in ISO (PMID:21123169) RGD PMID:21123169 NCBI chr16:17,042,264...17,045,770
Ensembl chr16:17,008,180...17,011,685 		JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:19017984 RGD:4143523 NCBI chr16:17,080,575...17,093,047
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Spon2 spondin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3026870 (PMID:14691481)
GO_REF:0000107		 RGD
Ensembl		 PMID:14691481 GO_REF:0000107 NCBI chr14:81,713,070...81,742,510
Ensembl chr14:77,511,901...77,517,996 		JBrowse link
phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 acts_upstream_of_or_within ISO
IEA		 MGI:1935192 (PMID:10878804)
GO_REF:0000107		 RGD
Ensembl		 PMID:10878804 GO_REF:0000107 NCBI chr 5:72,473,676...72,596,563
Ensembl chr 5:67,681,297...67,801,170 		JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in ISO
IEA		 (PMID:26838550)
GO_REF:0000107		 RGD
Ensembl		 PMID:26838550 GO_REF:0000107 NCBI chr 7:108,293,681...108,365,892
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Aif1 allograft inflammatory factor 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:10934045)		 UniProt
RGD		 PMID:10934045 GO_REF:0000024 NCBI chr20:3,651,435...3,657,341
Ensembl chr20:3,646,777...3,652,668 		JBrowse link
G Arhgap12 Rho GTPase activating protein 12 involved_in ISO
IEA		 (PMID:26465210)
GO_REF:0000107		 RGD
Ensembl		 PMID:26465210 GO_REF:0000107 NCBI chr17:56,284,282...56,397,630
Ensembl chr17:51,588,842...51,702,080 		JBrowse link
G Arhgap25 Rho GTPase activating protein 25 involved_in ISO
IEA
IBA		 (PMID:26465210)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:26465210 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:121,454,151...121,532,293
Ensembl chr 4:119,896,844...119,974,982 		JBrowse link
G Bin2 bridging integrator 2 involved_in ISO
IBA
IEA		 (PMID:23285027)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:23285027 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:133,620,782...133,647,019
Ensembl chr 7:131,742,002...131,786,285 		JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO
ISS		 (PMID:26465210)
GO_REF:0000024		 RGD
UniProt		 PMID:26465210 GO_REF:0000024 NCBI chr 5:154,838,478...154,876,629
Ensembl chr 5:149,553,724...149,593,111 		JBrowse link
G Cela1 chymotrypsin like elastase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:131,773,161...131,786,300
Ensembl chr 7:131,742,002...131,786,285 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 involved_in ISO
IEA		 (PMID:36964785)
GO_REF:0000107		 RGD
Ensembl		 PMID:36964785 GO_REF:0000107 NCBI chr11:93,702,382...93,716,059
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
G Clcn3 chloride voltage-gated channel 3 acts_upstream_of_or_within ISO MGI:2447864 (PMID:16522634) RGD PMID:16522634 NCBI chr16:34,138,004...34,210,984
Ensembl chr16:29,127,419...29,200,119 		JBrowse link
G Clec7a C-type lectin domain containing 7A acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
G Dppa1 developmental pluripotency associated 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:30,998,049...31,017,756
Ensembl chr10:30,998,049...31,017,756
Ensembl chr12:30,998,049...31,017,756 		JBrowse link
G Elmo1 engulfment and cell motility 1 involved_in ISO UniProtKB:P46108|UniProtKB:Q14185 (PMID:11595183) RGD PMID:11595183 NCBI chr17:48,982,188...49,518,525
Ensembl chr17:44,286,485...44,822,788 		JBrowse link
G Fcer1g Fc epsilon receptor Ig acts_upstream_of_or_within ISO MGI:1857165|MGI:2384004 (PMID:11237803), (PMID:11901193), (PMID:11911823) RGD PMID:11237803 PMID:11901193 PMID:11911823 NCBI chr13:86,181,908...86,186,766
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fcgr1a Fc gamma receptor 1A acts_upstream_of_or_within ISO MGI:2664927|MGI:2679238 (PMID:11911823), (PMID:11911824), (PMID:9551950) RGD PMID:9551950 PMID:11911823 PMID:11911824 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Fcgr2a Fc gamma receptor 2A acts_upstream_of_or_within ISO MGI:1861924 (PMID:8769481), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9743367 PMID:9834201 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Fcgr2b Fc gamma receptor 2B acts_upstream_of_or_within ISO (PMID:8769481) RGD PMID:8769481 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Gsn gelsolin involved_in ISO
IEA		 (PMID:23325791)
GO_REF:0000107		 RGD
Ensembl		 PMID:23325791 GO_REF:0000107 NCBI chr 3:38,982,605...39,035,849
Ensembl chr 3:18,585,172...18,638,402 		JBrowse link
G Gulp1 GULP PTB domain containing engulfment adaptor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:11729193)
GO_REF:0000107		 RGD
Ensembl		 PMID:11729193 GO_REF:0000107 NCBI chr 9:54,114,823...54,391,058
Ensembl chr 9:46,622,669...46,899,005 		JBrowse link
G Havcr1 hepatitis A virus cellular receptor 1 involved_in IMP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:18414680 GO_REF:0000033, RGD:2316597 NCBI chr10:31,619,914...31,652,955
Ensembl chr10:31,119,088...31,151,698 		JBrowse link
G Havcr1l1 hepatitis A virus cellular receptor 1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:30,919,860...30,941,388
Ensembl chr10:30,923,809...30,941,108 		JBrowse link
G Havcr1l2 hepatitis A virus cellular receptor 1 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:30,963,058...30,983,169
Ensembl chr10:30,968,739...30,981,979 		JBrowse link
G Ighg1 immunoglobulin heavy constant gamma 1 acts_upstream_of_or_within ISO (PMID:11901193), (PMID:11911823), (PMID:11911824), (PMID:8769481), (PMID:9551950), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9551950 PMID:9743367 PMID:9834201 PMID:11901193 More... Ensembl chr 6:132,389,370...132,393,397 JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:20199584), (PMID:22438044), (PMID:22632727) RGD PMID:20199584 PMID:22438044 PMID:22632727 NCBI chr 1:192,089,496...192,139,947
Ensembl chr 1:182,659,000...182,709,503 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:20199584) RGD PMID:20199584 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Marco macrophage receptor with collagenous structure involved_in IMP PMID:15987691 ARUK-UCL PMID:15987691 RGD:13432286 NCBI chr13:34,169,011...34,210,340
Ensembl chr13:31,616,278...31,648,521 		JBrowse link
G Msr1 macrophage scavenger receptor 1 involved_in ISO UniProtKB:P01027|UniProtKB:P05555 (PMID:22438044) RGD PMID:22438044 NCBI chr16:52,717,775...52,803,602
Ensembl chr16:52,717,732...52,799,676 		JBrowse link
G Myh9 myosin, heavy chain 9 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23325791)		 Ensembl
RGD		 PMID:23325791 GO_REF:0000107 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO (PMID:10934045) RGD PMID:10934045 NCBI chr12:16,150,411...16,170,864
Ensembl chr12:11,036,698...11,057,251 		JBrowse link
G Sh3bp1 SH3-domain binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26465210)		 UniProt
RGD		 PMID:26465210 GO_REF:0000024 NCBI chr 7:112,338,087...112,350,659
Ensembl chr 7:110,457,710...110,470,201 		JBrowse link
G Sirpa signal-regulatory protein alpha acts_upstream_of_or_within ISO (PMID:14634079) RGD PMID:14634079 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Timd2 T-cell immunoglobulin and mucin domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:31,561,563...31,602,515
Ensembl chr10:31,060,326...31,094,623 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:19155473)
(PMID:24990881)		 RGD PMID:19155473 PMID:24990881 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Treml4 triggering receptor expressed on myeloid cells-like 4 acts_upstream_of_or_within ISO (PMID:19155473) RGD PMID:19155473 NCBI chr 9:20,216,569...20,241,476
Ensembl chr 9:12,721,815...12,743,253 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in IDA PMID:15133481 UniProt PMID:15133481 RGD:4892614 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097 		JBrowse link
phagocytosis, recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21245295)		 Ensembl
RGD		 PMID:21245295 GO_REF:0000107 NCBI chr 7:108,293,681...108,365,892
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within ISO (PMID:16061696) RGD PMID:16061696 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO
IEA		 (PMID:14707091)
GO_REF:0000107		 RGD
Ensembl		 PMID:14707091 GO_REF:0000107 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:11567029)
GO_REF:0000107
(PMID:14707091)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:11567029 PMID:14707091 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
G Colec12 collectin sub-family member 12 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11564734)		 UniProt
RGD		 PMID:11564734 GO_REF:0000024 NCBI chr18:1,005,787...1,193,455
Ensembl chr18:732,950...920,618 		JBrowse link
G Fcgr1a Fc gamma receptor 1A acts_upstream_of_or_within ISO MGI:2664927|MGI:2679238 (PMID:11911823), (PMID:11911824), (PMID:9551950) RGD PMID:9551950 PMID:11911823 PMID:11911824 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Fcgr2a Fc gamma receptor 2A acts_upstream_of_or_within ISO MGI:1861924 (PMID:8769481), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9743367 PMID:9834201 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Ighg1 immunoglobulin heavy constant gamma 1 acts_upstream_of_or_within ISO (PMID:11911823), (PMID:11911824), (PMID:8769481), (PMID:9551950), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9551950 PMID:9743367 PMID:9834201 PMID:11911823 More... Ensembl chr 6:132,389,370...132,393,397 JBrowse link
G Scarb1 scavenger receptor class B, member 1 IMP RGD PMID:12016218 RGD:1304245 NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647 		JBrowse link
G Sirpa signal-regulatory protein alpha acts_upstream_of_or_within ISO (PMID:14634079) RGD PMID:14634079 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO
IEA		 (PMID:32514138)
GO_REF:0000107		 RGD
Ensembl		 PMID:32514138 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO MGI:1861349 (PMID:19837063), (PMID:20978472) RGD PMID:19837063 PMID:20978472 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:1859921 (PMID:19837063), (PMID:20978472)
GO_REF:0000107		 RGD
Ensembl		 PMID:19837063 PMID:20978472 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO
IEA		 (PMID:12132654)
GO_REF:0000107		 RGD
Ensembl		 PMID:12132654 GO_REF:0000107 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO
IEA		 MGI:2155422 (PMID:12743369)
GO_REF:0000107		 RGD
Ensembl		 PMID:12743369 GO_REF:0000107 NCBI chr 1:161,755,110...161,825,397
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:3606250 (PMID:11544318) RGD PMID:11544318 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:33,879,745...33,934,619 		JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:38,899,430...38,920,572
Ensembl chr 3:18,501,963...18,523,172 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:3706175 (PMID:19368996)		 GO_Central
Ensembl
RGD		 PMID:19368996 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:15,349,498...15,420,389
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA		 (PMID:26450516)
GO_REF:0000107		 RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21802320)		 UniProt
Ensembl
RGD		 PMID:21802320 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:143,304,597...143,348,580
Ensembl chr 4:141,748,587...141,792,596 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA		 (PMID:26450516)
GO_REF:0000107		 RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IEA
IBA		 (PMID:28779020)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:28779020 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:19342668)		 UniProt
RGD		 PMID:19342668 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO
IEA		 (PMID:21255211)
GO_REF:0000107		 RGD
Ensembl		 PMID:21255211 GO_REF:0000107 NCBI chr16:84,721,427...84,745,610
Ensembl chr16:78,019,337...78,043,529 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:23197834)
GO_REF:0000033
GO_REF:0000107
(PMID:21255211)		 UniProt
RGD
GO_Central
Ensembl		 PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,581,542...63,585,608
Ensembl chr10:63,083,338...63,087,538 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IEA
IBA		 (PMID:21255211)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:21255211 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:62,984,434...63,002,053
Ensembl chr 8:54,088,129...54,106,483 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IEA
IBA
ISS		 (PMID:21255211)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:21255211 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:45,673,396...45,699,798
Ensembl chr13:43,121,226...43,147,581 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16982801)		 UniProt
RGD		 PMID:16982801 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:26317472)		 UniProt
Ensembl
RGD		 PMID:26317472 GO_REF:0000024 GO_REF:0000107 NCBI chr14:1,217,911...1,234,236
Ensembl chr14:1,073,523...1,089,819 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO
IEA		 MGI:4377985 (PMID:26284655)
GO_REF:0000107		 RGD
Ensembl		 PMID:26284655 GO_REF:0000107 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:109,008,135...109,072,911 		JBrowse link
positive regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2 complement C2 involved_in ISO
IEA		 (PMID:19302245)
GO_REF:0000107		 RGD
Ensembl		 PMID:19302245 GO_REF:0000107 NCBI chr20:3,944,722...3,975,006
Ensembl chr20:3,951,474...3,976,505 		JBrowse link
G C3 complement C3 involved_in ISO
IEA		 (PMID:19302245)
GO_REF:0000107		 RGD
Ensembl		 PMID:19302245 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G C4a complement C4A involved_in ISO UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,010,306...4,024,707
Ensembl chr20:4,005,731...4,020,080 		JBrowse link
G C4b complement C4B involved_in ISO UniProtKB:P0C0L4|UniProtKB:P0C0L5 (PMID:19302245) RGD PMID:19302245 NCBI chr20:4,201,979...4,216,292
Ensembl chr20:4,197,366...4,211,681 		JBrowse link
G Ccl2 C-C motif chemokine ligand 2 involved_in ISO
IEA		 (PMID:20691665)
GO_REF:0000107		 RGD
Ensembl		 PMID:20691665 GO_REF:0000107 NCBI chr10:67,503,077...67,504,875
Ensembl chr10:67,005,424...67,007,226 		JBrowse link
G Cd300lf Cd300 molecule-like family member F involved_in ISS
ISO		 GO_REF:0000024
(PMID:21865548), (PMID:26768664)		 UniProt
RGD		 PMID:21865548 PMID:26768664 GO_REF:0000024 NCBI chr10:100,858,924...100,875,111
Ensembl chr10:100,359,943...100,376,041 		JBrowse link
G Cfb complement factor B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:3,975,271...3,981,138
Ensembl chr20:3,951,474...3,976,505 		JBrowse link
positive regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16908670)		 Alzheimers_University_of_Toronto
RGD		 PMID:16908670 GO_REF:0000024 NCBI chr 7:10,342,092...10,362,094
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO
IEA		 (PMID:24990881)
GO_REF:0000107		 RGD
Ensembl		 PMID:24990881 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO
IEA		 (PMID:25568335)
GO_REF:0000107		 RGD
Ensembl		 PMID:25568335 GO_REF:0000107 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754 		JBrowse link
positive regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colec10 collectin subfamily member 10 involved_in ISO
IEA		 (PMID:24174618)
GO_REF:0000107		 RGD
Ensembl		 PMID:24174618 GO_REF:0000107 NCBI chr 7:87,634,686...87,695,465
Ensembl chr 7:85,744,895...85,805,675 		JBrowse link
G Colec11 collectin sub-family member 11 involved_in ISO (PMID:24174618) RGD PMID:24174618 NCBI chr 6:50,952,357...50,984,845
Ensembl chr 6:45,223,980...45,271,145 		JBrowse link
G Fcnb ficolin B involved_in ISO
IEA		 (PMID:16116205)
GO_REF:0000107		 RGD
Ensembl		 PMID:16116205 GO_REF:0000107 NCBI chr 3:31,791,750...31,800,188
Ensembl chr 3:11,393,739...11,402,151 		JBrowse link
G Mbl2 mannose binding lectin 2 involved_in ISO (PMID:22966085) RGD PMID:22966085 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Myo18a myosin XVIIIa involved_in ISO
IEA		 (PMID:21123169)
GO_REF:0000107		 RGD
Ensembl		 PMID:21123169 GO_REF:0000107 NCBI chr10:62,654,218...62,755,465
Ensembl chr10:62,654,281...62,755,468 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:19342668)		 UniProt
RGD		 PMID:19342668 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
positive regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006691.1 involved_in
acts_upstream_of_or_within		 IBA
IEA		 GO_REF:0000033
GO_REF:0000107		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 Ensembl chr 1:228,016,498...228,043,066 JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20495215), (PMID:27472885)		 Alzheimers_University_of_Toronto
RGD		 PMID:20495215 PMID:27472885 GO_REF:0000024 NCBI chr 7:10,342,092...10,362,094
Ensembl chr 7:9,691,449...9,711,425 		JBrowse link
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:17116687) RGD PMID:17116687 NCBI chr10:61,760,743...61,959,526
Ensembl chr10:61,262,516...61,461,505 		JBrowse link
G Ager advanced glycosylation end product-specific receptor IMP immunofluorescence (MMO:0000662) RGD PMID:29753380 RGD:597538587 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Ahsg alpha-2-HS-glycoprotein involved_in ISO
ISS		 (PMID:12725640)
GO_REF:0000024		 RGD
UniProt		 PMID:12725640 GO_REF:0000024 NCBI chr11:91,625,975...91,632,583
Ensembl chr11:78,117,918...78,145,999 		JBrowse link
G Apoa1 apolipoprotein A1 involved_in ISO
IEA
ISS		 (PMID:20495215)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20495215 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:55,423,945...55,425,729
Ensembl chr 8:46,527,144...46,529,035 		JBrowse link
G Apoa2 apolipoprotein A2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20495215)		 UniProt
RGD		 PMID:20495215 GO_REF:0000024 NCBI chr13:86,176,767...86,178,819
Ensembl chr13:83,644,470...83,646,355 		JBrowse link
G Arap1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:35758026)		 Ensembl
RGD		 PMID:35758026 GO_REF:0000107 NCBI chr 1:165,160,701...165,226,219
Ensembl chr 1:155,748,652...155,814,184 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:17116687) RGD PMID:17116687 NCBI chr20:13,468,732...13,596,333
Ensembl chr20:13,471,668...13,597,016 		JBrowse link
G Btk Bruton tyrosine kinase IMP RGD PMID:28352114 RGD:151665126 NCBI chr  X:102,016,070...102,055,448
Ensembl chr  X:97,722,802...97,761,853 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO
IEA		 MGI:1861799 (PMID:11901193)
GO_REF:0000107		 RGD
Ensembl		 PMID:11901193 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Calr calreticulin involved_in ISO
IEA		 (PMID:17187072)
GO_REF:0000107		 RGD
Ensembl		 PMID:17187072 GO_REF:0000107 NCBI chr19:40,213,367...40,218,262
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Camk1d calcium/calmodulin-dependent protein kinase ID involved_in ISO
IEA		 (PMID:15840691)
GO_REF:0000107		 RGD
Ensembl		 PMID:15840691 GO_REF:0000107 NCBI chr17:72,581,899...72,982,704
Ensembl chr17:72,581,979...72,980,556 		JBrowse link
G Cd36 CD36 molecule IMP RGD PMID:23238794 RGD:8696010 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G Cd47 Cd47 molecule acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA
IEA		 (PMID:14634079)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:14634079 PMID:23238794 GO_REF:0000002 GO_REF:0000033, RGD:8696010 NCBI chr11:64,374,816...64,438,763
Ensembl chr11:50,906,177...50,969,425 		JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO
IEA		 (PMID:14707091)
GO_REF:0000107		 RGD
Ensembl		 PMID:14707091 GO_REF:0000107 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Clec7a C-type lectin domain containing 7A involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19358895)
GO_REF:0000107
(PMID:14707091)		 RGD
Ensembl		 PMID:14707091 PMID:19358895 GO_REF:0000107 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897 		JBrowse link
G Cyba cytochrome b-245 alpha chain involved_in ISO
IEA		 (PMID:22423966)
GO_REF:0000107		 RGD
Ensembl		 PMID:22423966 GO_REF:0000107 NCBI chr19:67,396,143...67,404,214
Ensembl chr19:50,487,597...50,495,721 		JBrowse link
G Dnm2 dynamin 2 IMP RGD PMID:12802072 RGD:9685290 NCBI chr 8:28,254,344...28,336,297
Ensembl chr 8:19,978,400...20,060,157 		JBrowse link
G Dock2 dedicator of cytokinesis 2 involved_in ISO
IEA		 (PMID:21892172)
GO_REF:0000107		 RGD
Ensembl		 PMID:21892172 GO_REF:0000107 NCBI chr10:19,331,412...19,748,987
Ensembl chr10:18,827,239...19,244,808 		JBrowse link
G Fcer1g Fc epsilon receptor Ig involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:1857165|MGI:2384004 (PMID:11237803), (PMID:11901193), (PMID:11911823)		 GO_Central
RGD		 PMID:11237803 PMID:11901193 PMID:11911823 GO_REF:0000033 NCBI chr13:86,181,908...86,186,766
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fcgr1a Fc gamma receptor 1A acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2664927|MGI:2679238 (PMID:11911823), (PMID:11911824), (PMID:9551950)
GO_REF:0000033		 RGD
GO_Central		 PMID:9551950 PMID:11911823 PMID:11911824 GO_REF:0000033 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Fcgr2a Fc gamma receptor 2A acts_upstream_of_or_within ISO MGI:1861924 (PMID:8769481), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9743367 PMID:9834201 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Fcgr2b Fc gamma receptor 2B acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:8769481)
GO_REF:0000033		 RGD
GO_Central		 PMID:8769481 GO_REF:0000033 NCBI chr13:85,725,897...85,740,517
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Fpr2 formyl peptide receptor 2 involved_in ISO
IEA		 (PMID:25505240)
GO_REF:0000107		 RGD
Ensembl		 PMID:25505240 GO_REF:0000107 NCBI chr 1:67,449,637...67,458,272
Ensembl chr 1:58,776,752...58,786,019 		JBrowse link
G Gas6 growth arrest specific 6 involved_in ISO
IEA
ISS		 (PMID:18395422)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:18395422 GO_REF:0000024 GO_REF:0000107 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904 		JBrowse link
G Gata2 GATA binding protein 2 involved_in IDA PMID:12933836 UniProt PMID:12933836 RGD:632788 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 IMP RGD PMID:9886410 RGD:10059405 NCBI chr 8:50,080,514...50,084,376
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Ifng interferon gamma involved_in ISO (PMID:20368278) RGD PMID:20368278 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Ighg1 immunoglobulin heavy constant gamma 1 acts_upstream_of_or_within ISO (PMID:11901193), (PMID:11911823), (PMID:11911824), (PMID:8769481), (PMID:9551950), (PMID:9743367), (PMID:9834201) RGD PMID:8769481 PMID:9551950 PMID:9743367 PMID:9834201 PMID:11901193 More... Ensembl chr 6:132,389,370...132,393,397 JBrowse link
G Il15 interleukin 15 involved_in ISO
IEA
ISS		 (PMID:15123770)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:15123770 GO_REF:0000024 GO_REF:0000107 NCBI chr19:42,536,160...42,611,349
Ensembl chr19:25,640,251...25,706,820 		JBrowse link
G Il15ra interleukin 15 receptor subunit alpha involved_in ISO
IEA		 (PMID:15123770)
GO_REF:0000107		 RGD
Ensembl		 PMID:15123770 GO_REF:0000107 NCBI chr17:71,712,141...71,742,072
Ensembl chr17:66,802,334...66,832,278 		JBrowse link
G Il2rb interleukin 2 receptor subunit beta involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15123770)		 UniProt
Ensembl
RGD		 PMID:15123770 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:111,913,828...111,928,537
Ensembl chr 7:110,033,341...110,048,054 		JBrowse link
G Il2rg interleukin 2 receptor subunit gamma involved_in ISO
IEA		 (PMID:15123770)
GO_REF:0000107		 RGD
Ensembl		 PMID:15123770 GO_REF:0000107 NCBI chr  X:70,435,340...70,439,052
Ensembl chr  X:66,392,542...66,399,823 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:25453580) RGD PMID:25453580 NCBI chr20:11,061,009...11,097,242
Ensembl chr20:11,061,430...11,097,600 		JBrowse link
G Lman2 lectin, mannose-binding 2 involved_in ISO
IEA		 (PMID:22016386)
GO_REF:0000107		 RGD
Ensembl		 PMID:22016386 GO_REF:0000107 NCBI chr17:9,274,362...9,294,950
Ensembl chr17:9,269,022...9,287,265 		JBrowse link
G LOC100909977 leukocyte surface antigen CD47-like involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr11:65,017,692...65,082,553
Ensembl chr11:51,554,714...51,619,588 		JBrowse link
G Lrp1 LDL receptor related protein 1 IMP RGD PMID:19299462 RGD:13800552 NCBI chr 7:65,265,639...65,346,196
Ensembl chr 7:63,380,356...63,460,910 		JBrowse link
G Lyar Ly1 antibody reactive involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:25735755)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:25735755 GO_REF:0000024 GO_REF:0000107 NCBI chr14:76,789,193...76,802,973
Ensembl chr14:72,576,879...72,590,612 		JBrowse link
G Mbl1 mannose binding lectin 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:96924 (PMID:15148336)
GO_REF:0000033		 RGD
GO_Central		 PMID:15148336 GO_REF:0000033 NCBI chr16:17,063,232...17,069,271
Ensembl chr16:17,029,118...17,035,174 		JBrowse link
G Mbl2 mannose binding lectin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 MGI:96923 (PMID:15148336)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15148336 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:237,429,873...237,465,567 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase involved_in IDA
IEA
ISO		 GO_REF:0000107
(PMID:18395422)		 Ensembl
RGD		 PMID:18395422 PMID:11592982 GO_REF:0000107, RGD:69668 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mex3b mex-3 RNA binding family member B acts_upstream_of_or_within ISO MGI:5638674 (PMID:24803656) RGD PMID:24803656 NCBI chr 1:136,855,130...136,859,365
Ensembl chr 1:136,855,130...136,859,354 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO (PMID:19940135) RGD PMID:19940135 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Myh9 myosin, heavy chain 9 IMP RGD PMID:19117932 RGD:6902913 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 acts_upstream_of_or_within ISO MGI:3529594 (PMID:19139201) RGD PMID:19139201 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:16407308)		 UniProt
RGD		 PMID:16407308 GO_REF:0000024 NCBI chr 5:156,324,628...156,393,065
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in ISO
IEA		 (PMID:27994074)
GO_REF:0000107		 RGD
Ensembl		 PMID:27994074 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:24,155,090...24,178,430 		JBrowse link
G Pros1 protein S IDA RGD PMID:15949798 RGD:2300013 NCBI chr11:13,676,310...13,757,858
Ensembl chr11:230,696...311,286 		JBrowse link
G Ptk2 protein tyrosine kinase 2 IMP RGD PMID:12912913 RGD:1299194 NCBI chr 7:107,015,730...107,220,865
Ensembl chr 7:105,126,728...105,331,783 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO UniProtKB:Q64455 (PMID:18249142) RGD PMID:18249142 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Ptprj protein tyrosine phosphatase, receptor type, J involved_in ISO
IEA		 UniProtKB:P06800 (PMID:18249142)
GO_REF:0000107		 RGD
Ensembl		 PMID:18249142 GO_REF:0000107 NCBI chr 3:96,861,785...97,017,702
Ensembl chr 3:76,405,927...76,562,260 		JBrowse link
G Ptx3 pentraxin 3 acts_upstream_of_or_within ISO (PMID:14726497) RGD PMID:14726497 NCBI chr 2:150,487,513...150,493,323
Ensembl chr 2:150,487,513...150,493,323 		JBrowse link
G Pycard PYD and CARD domain containing involved_in ISO
IEA		 (PMID:21892172)
GO_REF:0000107		 RGD
Ensembl		 PMID:21892172 GO_REF:0000107 NCBI chr 1:192,032,124...192,033,419
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in ISO
IEA		 (PMID:24404184)
GO_REF:0000107		 RGD
Ensembl		 PMID:24404184 GO_REF:0000107 NCBI chr 8:82,663,373...82,717,267
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
G Rap1a RAP1A, member of RAS oncogene family IMP RGD PMID:18832707 RGD:9835043 NCBI chr 2:195,896,967...195,974,851
Ensembl chr 2:193,208,635...193,286,501 		JBrowse link
G Rap1gap Rap1 GTPase-activating protein acts_upstream_of_or_within ISO
IEA		 (PMID:24803656)
GO_REF:0000107		 RGD
Ensembl		 PMID:24803656 GO_REF:0000107 NCBI chr 5:155,157,511...155,222,622
Ensembl chr 5:149,892,019...149,939,253 		JBrowse link
G Rapgef1 Rap guanine nucleotide exchange factor 1 IMP RGD PMID:18832707 RGD:9835043 NCBI chr 3:33,296,211...33,414,119
Ensembl chr 3:12,898,266...13,013,984 		JBrowse link
G Sftpa1 surfactant protein A1 IDA RGD PMID:15187139 RGD:4144050 NCBI chr16:17,042,264...17,045,770
Ensembl chr16:17,008,180...17,011,685 		JBrowse link
G Sftpd surfactant protein D involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:15591410 GO_REF:0000033, RGD:4144046 NCBI chr16:17,080,575...17,093,047
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Sirpa signal-regulatory protein alpha acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:14634079)
GO_REF:0000033		 RGD
GO_Central		 PMID:14634079 GO_REF:0000033 NCBI chr 3:137,272,932...137,311,279
Ensembl chr 3:116,819,726...116,858,098 		JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO
IEA		 MGI:2446573 (PMID:18456389), (PMID:18984740)
GO_REF:0000107		 RGD
Ensembl		 PMID:18456389 PMID:18984740 GO_REF:0000107 NCBI chr 9:83,406,327...83,417,252
Ensembl chr 9:75,957,316...75,968,101 		JBrowse link
G Sod1 superoxide dismutase 1 involved_in ISO
IEA		 RNAcentral:URS0000021B51_10090 (PMID:25381879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25381879 GO_REF:0000107 NCBI chr11:42,942,742...42,948,399
Ensembl chr11:29,456,558...29,462,249 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA		 (PMID:27994074)
GO_REF:0000107		 RGD
Ensembl		 PMID:27994074 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Tlr2 toll-like receptor 2 IMP RGD PMID:36281822 RGD:597538461 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO
IEA		 (PMID:29518357)
GO_REF:0000107
(PMID:29663649), (PMID:31370707), (PMID:31902528)		 RGD
Ensembl		 PMID:29518357 PMID:29663649 PMID:31370707 PMID:31902528 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Tub TUB bipartite transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:19837063)		 UniProt
RGD		 PMID:19837063 GO_REF:0000024 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO
IEA		 (PMID:19837063)
GO_REF:0000107		 RGD
Ensembl		 PMID:19837063 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
positive regulation of phagocytosis, engulfment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor IMP RGD PMID:23238794 RGD:8696010 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Ano6 anoctamin 6 involved_in ISO (PMID:25651887) RGD PMID:25651887 NCBI chr 7:128,812,842...128,992,805
Ensembl chr 7:126,933,936...127,113,589 		JBrowse link
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in ISO
IEA		 (PMID:25568335)
GO_REF:0000107		 RGD
Ensembl		 PMID:25568335 GO_REF:0000107 NCBI chr 7:22,019,480...22,072,386
Ensembl chr 7:20,135,375...20,184,754 		JBrowse link
G C3 complement C3 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P05555 (PMID:20199584), (PMID:22438044), (PMID:22632727)		 Ensembl
RGD		 PMID:20199584 PMID:22438044 PMID:22632727 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cd36 CD36 molecule acts_upstream_of_or_within ISO MGI:2447190 (PMID:16061696) RGD PMID:16061696 NCBI chr 4:18,209,088...18,302,142
Ensembl chr 4:17,354,466...17,513,903 		JBrowse link
G F2rl1 F2R like trypsin receptor 1 involved_in ISO
IEA		 (PMID:21501162)
GO_REF:0000107		 RGD
Ensembl		 PMID:21501162 GO_REF:0000107 NCBI chr 2:28,507,003...28,519,954
Ensembl chr 2:26,772,278...26,785,226 		JBrowse link
G Fcgr1a Fc gamma receptor 1A IMP RGD PMID:19657115 RGD:9685698 NCBI chr 2:186,539,941...186,548,941
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Gata2 GATA binding protein 2 IMP RGD PMID:12933836 RGD:632788 NCBI chr 4:122,211,501...122,225,058
Ensembl chr 4:120,658,986...120,667,761 		JBrowse link
G Itga2 integrin subunit alpha 2 IMP RGD PMID:9284952 RGD:2307413 NCBI chr 2:48,253,412...48,354,509
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Lbp lipopolysaccharide binding protein IDA RGD PMID:11104656 RGD:9685187 NCBI chr 3:167,373,786...167,400,941
Ensembl chr 3:146,954,015...146,981,586 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in ISS
ISO		 GO_REF:0000024
(PMID:19015308)		 UniProt
RGD		 PMID:19015308 GO_REF:0000024 NCBI chr 7:136,455,900...136,501,384
Ensembl chr 7:134,577,482...134,622,934 		JBrowse link
G Plcg2 phospholipase C, gamma 2 acts_upstream_of_or_within ISO (PMID:32514138) RGD PMID:32514138 NCBI chr19:62,456,196...62,592,684
Ensembl chr19:45,547,416...45,683,930 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IMP RGD PMID:15940641 RGD:8553017 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25568335)		 UniProt
Ensembl
RGD		 PMID:25568335 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:112,693,596...112,828,104
Ensembl chr 9:105,246,709...105,381,253 		JBrowse link
G Stap1 signal transducing adaptor family member 1 involved_in ISO (PMID:19100238) RGD PMID:19100238 NCBI chr14:22,301,278...22,336,218
Ensembl chr14:21,952,496...21,981,245 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in
acts_upstream_of		 ISO
IEA
IBA		 (PMID:28855300), (PMID:33097708)
GO_REF:0000107
(PMID:25631124), (PMID:29752066)
GO_REF:0000033
(PMID:32514138)		 RGD
Ensembl
GO_Central		 PMID:25631124 PMID:28855300 PMID:29752066 PMID:32514138 PMID:33097708 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
recognition of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcnb ficolin B involved_in ISO
IEA		 (PMID:15804047)
GO_REF:0000107		 RGD
Ensembl		 PMID:15804047 GO_REF:0000107 NCBI chr 3:31,791,750...31,800,188
Ensembl chr 3:11,393,739...11,402,151 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO
IEA		 MGI:2686850 (PMID:10811223), (PMID:14645847)
GO_REF:0000107		 RGD
Ensembl		 PMID:10811223 PMID:14645847 GO_REF:0000107 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Megf10 multiple EGF-like domains 10 acts_upstream_of_or_within ISO
IEA		 (PMID:19915564)
GO_REF:0000107		 RGD
Ensembl		 PMID:19915564 GO_REF:0000107 NCBI chr18:52,803,292...52,953,431
Ensembl chr18:50,605,656...50,754,456 		JBrowse link
G Pear1 platelet endothelial aggregation receptor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:19915564)
GO_REF:0000107		 RGD
Ensembl		 PMID:19915564 GO_REF:0000107 NCBI chr 2:173,206,298...173,234,106
Ensembl chr 2:173,207,664...173,227,440 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO
IBA
IEA
IDA
ISS		 (PMID:9211901)
GO_REF:0000033
GO_REF:0000107
PMID:12016218
GO_REF:0000024		 RGD
GO_Central
Ensembl
BHF-UCL		 PMID:9211901 PMID:12016218 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:1304245 NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647 		JBrowse link
regulation of apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgm2 transglutaminase 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12810961), (PMID:15905580)
(PMID:7935379)		 UniProt
RGD		 PMID:7935379 PMID:12810961 PMID:15905580 GO_REF:0000024 NCBI chr 3:167,192,612...167,221,845
Ensembl chr 3:146,772,687...146,801,981 		JBrowse link
regulation of engulfment of apoptotic cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:11278875), (PMID:22503541)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:11278875 PMID:22503541 GO_REF:0000024 GO_REF:0000107 NCBI chr10:55,559,060...55,567,535
Ensembl chr10:55,060,412...55,068,874 		JBrowse link
regulation of opsonization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C4bpa complement component 4 binding protein, alpha involved_in IEA
ISO		 GO_REF:0000107
(PMID:22333221)		 Ensembl
RGD		 PMID:22333221 GO_REF:0000107 NCBI chr13:44,627,959...44,663,552
Ensembl chr13:42,075,717...42,111,205 		JBrowse link
G C4bpb complement component 4 binding protein, beta involved_in ISO
IEA		 (PMID:22333221)
GO_REF:0000107		 RGD
Ensembl		 PMID:22333221 GO_REF:0000107 NCBI chr13:42,120,798...42,131,515
Ensembl chr13:42,120,798...42,131,817 		JBrowse link
regulation of phagocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fcgr2a Fc gamma receptor 2A IMP RGD PMID:16482158 PMID:22184119 RGD:2293335, RGD:11041001 NCBI chr13:85,813,516...85,830,269
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase involved_in ISS
ISO		 GO_REF:0000024
(PMID:11672534)		 UniProt
RGD		 PMID:11672534 GO_REF:0000024 NCBI chr 5:150,473,767...150,503,524
Ensembl chr 5:145,189,841...145,217,326 		JBrowse link
G Hck HCK proto-oncogene, Src family tyrosine kinase involved_in ISS
ISO		 GO_REF:0000024
(PMID:11904303)		 UniProt
RGD		 PMID:11904303 GO_REF:0000024 NCBI chr 3:162,031,833...162,074,933
Ensembl chr 3:141,571,587...141,614,693 		JBrowse link
G Itgav integrin subunit alpha V involved_in ISO
IEA		 (PMID:10570297)
GO_REF:0000107		 RGD
Ensembl		 PMID:10570297 GO_REF:0000107 NCBI chr 3:89,245,382...89,333,512
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
G Letmd1 LETM1 domain containing 1 involved_in ISO
IEA		 (PMID:31980577)
GO_REF:0000107		 RGD
Ensembl		 PMID:31980577 GO_REF:0000107 NCBI chr 7:133,461,920...133,476,592
Ensembl chr 7:131,584,259...131,597,796 		JBrowse link
G Pot1 protection of telomeres 1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:55,170,821...55,228,588
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Prkcg protein kinase C, gamma acts_upstream_of_or_within ISO
IEA		 (PMID:15006698)
GO_REF:0000107		 RGD
Ensembl		 PMID:15006698 GO_REF:0000107 NCBI chr 1:74,748,272...74,777,611
Ensembl chr 1:65,832,855...65,859,384 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO
IEA		 (PMID:12100025)
GO_REF:0000107		 RGD
Ensembl		 PMID:12100025 GO_REF:0000107 NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 TAS
IDA		 RGD PMID:10026214 PMID:12016218 RGD:1304217, RGD:1304245 NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647 		JBrowse link
G Sphk1 sphingosine kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29662056)		 UniProt
RGD		 PMID:29662056 GO_REF:0000024 NCBI chr10:102,257,413...102,263,086
Ensembl chr10:101,758,711...101,764,240 		JBrowse link
G Syk spleen associated tyrosine kinase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:19797524)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:19797524 GO_REF:0000024 GO_REF:0000107 NCBI chr17:12,756,493...12,830,927
Ensembl chr17:12,604,619...12,661,410 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16982801)		 UniProt
RGD		 PMID:16982801 GO_REF:0000024 NCBI chr 1:216,456,148...216,518,718
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    cellular process 19550
      vesicle-mediated transport 1654
        endocytosis 728
          phagocytosis 234
            apoptotic cell clearance + 43
            immune response-regulating cell surface receptor signaling pathway involved in phagocytosis + 6
            negative regulation of phagocytosis + 27
            phagocytosis, engulfment + 60
            phagocytosis, recognition + 29
            phagolysosome assembly + 17
            positive regulation of phagocytosis + 88
            regulation of phagocytosis + 121
Path 2
Term Annotations click to browse term
  biological_process 20558
    localization 5728
      establishment of localization 5075
        transport 4763
          vesicle-mediated transport 1654
            endocytosis 728
              phagocytosis 234
                apoptotic cell clearance + 43
                immune response-regulating cell surface receptor signaling pathway involved in phagocytosis + 6
                negative regulation of phagocytosis + 27
                phagocytosis, engulfment + 60
                phagocytosis, recognition + 29
                phagolysosome assembly + 17
                positive regulation of phagocytosis + 88
                regulation of phagocytosis + 121
paths to the root