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ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin metabolic process
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Accession:GO:0006766 term browser browse the term
Definition:The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems.
Synonyms:exact_synonym: vitamin metabolism
 xref: Reactome:R-HSA-211916 "Vitamins"


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biotin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btd biotinidase involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:4888510 (PMID:21051254)
MGI:4888510 (PMID:24075304)		 GO_Central
RGD		 PMID:21051254 PMID:24075304 GO_REF:0000033 NCBI chr16:6,863,068...6,894,345 JBrowse link
G Hlcs holocarboxylase synthetase involved_in ISO MGI:6446223 (PMID:35385533) RGD PMID:35385533 NCBI chr11:33,455,806...33,635,197 JBrowse link
G Slc5a6 solute carrier family 5 member 6 involved_in ISO MGI:5493496 (PMID:23104561) RGD PMID:23104561 NCBI chr 6:31,039,865...31,051,671 JBrowse link
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 involved_in ISO
IEA
IBA		 (PMID:15465040)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:15465040 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:83,712,402...83,743,222 JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO
IEA
IBA		 (PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400)
GO_REF:0000107
(PMID:15972816)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:9415400 PMID:15795327 PMID:15972816 PMID:16549446 PMID:17023519 More... GO_REF:0000033 GO_REF:0000107 NCBI chr 7:64,756,626...64,761,570 JBrowse link
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 involved_in ISO (PMID:15465040), (PMID:18511070) RGD PMID:15465040 PMID:18511070 NCBI chr 1:178,166,984...178,232,191 JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:14,321,771...14,343,886 JBrowse link
cobalamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cubn cubilin IMP RGD PMID:14576052 RGD:8554807 NCBI chr17:76,385,046...76,593,133 JBrowse link
cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd4 ATP binding cassette subfamily D member 4 involved_in ISO (PMID:22922874), (PMID:33845046) RGD PMID:22922874 PMID:33845046 NCBI chr 6:104,246,459...104,260,965 JBrowse link
G Amn amnion associated transmembrane protein involved_in ISO (PMID:14576052) RGD PMID:14576052 NCBI chr 6:130,311,372...130,318,815 JBrowse link
G Cubn cubilin involved_in IEA
ISO		 GO_REF:0000107
(PMID:14576052)		 Ensembl
RGD		 PMID:14576052 GO_REF:0000107 NCBI chr17:76,385,046...76,593,133 JBrowse link
G Mmaa metabolism of cobalamin associated A involved_in ISO (PMID:31056463) RGD PMID:31056463 NCBI chr19:28,619,060...28,649,319 JBrowse link
G Mmab metabolism of cobalamin associated B involved_in ISO (PMID:12514191) RGD PMID:12514191 NCBI chr12:42,159,109...42,172,518 JBrowse link
G Mmachc metabolism of cobalamin associated C involved_in ISO
IBA		 (PMID:19700356), (PMID:22642810), (PMID:23825108)
GO_REF:0000033		 RGD
GO_Central		 PMID:19700356 PMID:22642810 PMID:23825108 GO_REF:0000033 NCBI chr 5:130,166,056...130,172,735 JBrowse link
G Mmadhc metabolism of cobalamin associated D involved_in IEA
ISO
ISS		 GO_REF:0000002
GO_REF:0000107
(PMID:22156578), (PMID:24722857)
GO_REF:0000024		 InterPro
Ensembl
RGD
UniProt		 PMID:22156578 PMID:24722857 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:34,708,649...34,726,554 JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IEA
ISO		 GO_REF:0000107
MGI:2180496 (PMID:11158293)
(PMID:23825108)		 Ensembl
RGD		 PMID:11158293 PMID:23825108 GO_REF:0000107 NCBI chr17:62,911,705...62,996,544 JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO (PMID:17369066) RGD PMID:17369066 NCBI chr 1:34,866,991...34,899,425 JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) RGD PMID:12764149 NCBI chr 8:98,609,410...98,681,901 JBrowse link
G Pm20d2 peptidase M20 domain containing 2 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:47,566,059...47,586,334 JBrowse link
folic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 involved_in IDA PMID:1848231 UniProt PMID:1848231 RGD:632027 NCBI chr 4:123,059,989...123,106,471 JBrowse link
G Aldh1l2 aldehyde dehydrogenase 1 family, member L2 involved_in ISO (PMID:33168096) RGD PMID:33168096 NCBI chr 7:22,141,872...22,193,403 JBrowse link
G Dhfr dihydrofolate reductase involved_in IDA
IBA		 PMID:20424322
GO_REF:0000033		 GO_Central PMID:20424322 GO_REF:0000033, RGD:10054082 NCBI chr 2:25,320,895...25,346,004 JBrowse link
G Folr1 folate receptor alpha acts_upstream_of_or_within ISO MGI:2383986 (PMID:12854656) RGD PMID:12854656 NCBI chr 1:165,631,462...165,650,430 JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISS
ISO		 GO_REF:0000024
(PMID:24074862)
(PMID:11466310)		 UniProt
RGD		 PMID:11466310 PMID:24074862 GO_REF:0000024 NCBI chr 1:34,866,991...34,899,425 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:11278996) RGD PMID:11278996 NCBI chr10:45,968,959...45,990,341 JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within		 IMP
ISO		 PMID:22820017
(PMID:15769935)
MGI:4239556 (PMID:20410296)		 RGD PMID:15769935 PMID:20410296 PMID:22820017 RGD:13825440 NCBI chr 5:135,329,605...135,367,037 JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B1 involved_in ISO MGI:5008171 (PMID:20410296) RGD PMID:20410296 NCBI chr 4:63,899,222...63,913,315 JBrowse link
G Gsto1 glutathione S-transferase omega 1 IMP RGD PMID:9786866 RGD:70644 NCBI chr 1:256,662,377...256,672,515 JBrowse link
G Gulo gulonolactone (L-) oxidase involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000107		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr15:44,381,226...44,403,314 JBrowse link
G Rgn regucalcin involved_in ISS
ISO
IBA		 GO_REF:0000024
MGI:2670511 (PMID:16585534), (PMID:23349732)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:16585534 PMID:23349732 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:4,172,537...4,190,112 JBrowse link
L-ascorbic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 acts_upstream_of_or_within ISO MGI:88107 (PMID:33544780) RGD PMID:33544780 NCBI chr13:87,261,964...87,286,911 JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO MGI:88106 (PMID:33544780) RGD PMID:33544780 NCBI chr 1:89,700,645...89,729,782 JBrowse link
G Clstn3 calsyntenin 3 involved_in ISO (PMID:34673103)
(PMID:33672967)		 RGD PMID:33672967 PMID:34673103 NCBI chr 4:157,331,494...157,364,769 JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO (PMID:28106121) RGD PMID:28106121 NCBI chr15:20,974,771...21,010,170 JBrowse link
G Gclc glutamate-cysteine ligase, catalytic subunit acts_upstream_of_or_within ISO MGI:2429419 (PMID:11118286) RGD PMID:11118286 NCBI chr 8:87,510,251...87,548,896 JBrowse link
G Gsto1 glutathione S-transferase omega 1 involved_in ISO
IEA
IBA
ISS		 (PMID:11511179)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:11511179 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:256,662,377...256,672,515 JBrowse link
G Gsto2 glutathione S-transferase omega 2 involved_in ISO
IBA
IEA
ISS		 (PMID:15970797)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:15970797 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:246,731,314...246,757,592 JBrowse link
G Mir125a microRNA 125a IDA RGD PMID:27085842 RGD:26884454 NCBI chr 1:67,350,675...67,350,759 JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within ISO (PMID:28106121) RGD PMID:28106121 NCBI chr 5:146,748,638...146,764,656 JBrowse link
G Slc23a2 solute carrier family 23 member 2 IMP RGD PMID:10331392 RGD:634186 NCBI chr 3:119,302,651...119,395,289 JBrowse link
negative regulation of calcidiol 1-monooxygenase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in ISO (PMID:16549446) RGD PMID:16549446 NCBI chr 7:64,756,626...64,761,570 JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor involved_in ISO (PMID:15947108) RGD PMID:15947108 NCBI chr14:2,040,576...2,056,874 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO (PMID:15243130) RGD PMID:15243130 NCBI chr 2:226,689,745...226,805,897 JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c3 aldo-keto reductase family 1, member C3 involved_in ISO (PMID:21851338) RGD PMID:21851338 NCBI chr17:71,020,884...71,037,779 JBrowse link
G Prmt3 protein arginine methyltransferase 3 involved_in ISO
ISS
IEA		 (PMID:33495566)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:33495566 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:99,492,712...99,581,774 JBrowse link
negative regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snai1 snail family transcriptional repressor 1 involved_in ISO (PMID:19502595) RGD PMID:19502595 NCBI chr 3:176,667,476...176,671,965 JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:18485278), (PMID:19502595) RGD PMID:18485278 PMID:19502595 NCBI chr11:99,686,934...99,690,349 JBrowse link
nicotinamide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nnmt nicotinamide N-methyltransferase involved_in ISO (PMID:21823666), (PMID:8182091)
(PMID:26168293)		 RGD PMID:8182091 PMID:21823666 PMID:26168293 NCBI chr 8:57,820,156...57,851,301 JBrowse link
pantothenate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vnn1 vanin 1 involved_in ISO
IBA		 (PMID:11491533), (PMID:25478849)
GO_REF:0000033		 RGD
GO_Central		 PMID:11491533 PMID:25478849 GO_REF:0000033 NCBI chr 1:21,537,084...21,547,395 JBrowse link
G Vnn3 vanin 3 involved_in IBA
ISO		 GO_REF:0000033
(PMID:11491533)		 GO_Central
RGD		 PMID:11491533 GO_REF:0000033 NCBI chr 1:21,571,364...21,583,626 JBrowse link
phylloquinone catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbr1 carbonyl reductase 1 IDA menadione catabolism RGD PMID:16359670 RGD:2316273 NCBI chr11:46,346,405...46,348,815 JBrowse link
G Cbr3 carbonyl reductase 3 IDA menadione catabolism RGD PMID:18983987 RGD:2316293 NCBI chr11:46,478,295...46,486,555 JBrowse link
phylloquinone metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISO
IEA		 MGI:5707728 (PMID:25127365)
GO_REF:0000107		 RGD
Ensembl		 PMID:25127365 GO_REF:0000107 NCBI chr 5:158,856,582...158,880,490 JBrowse link
positive regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clybl citramalyl-CoA lyase involved_in IEA
ISO		 GO_REF:0000107
(PMID:29056341)		 Ensembl
RGD		 PMID:29056341 GO_REF:0000107 NCBI chr15:105,690,283...105,912,347 JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 5:7,969,931...7,998,834 JBrowse link
G Rdh16 retinol dehydrogenase 16 IMP RGD PMID:21138835 RGD:6771354 NCBI chr 7:65,499,763...65,510,304 JBrowse link
positive regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma involved_in ISO (PMID:9282826) RGD PMID:9282826 NCBI chr 7:55,789,180...55,793,216 JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:1690216) RGD PMID:1690216 NCBI chr20:3,626,685...3,629,303 JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr20:10,209,975...10,232,012 JBrowse link
G Pdxkl1 pyridoxal kinase like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:10,162,634...10,192,271 JBrowse link
pyridoxal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in ISO (PMID:33318193) RGD PMID:33318193 NCBI chr20:10,209,975...10,232,012 JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase IDA RGD PMID:2988502 RGD:2303018 NCBI chr20:10,209,975...10,232,012 JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in ISO
IBA		 (PMID:12824491)
GO_REF:0000033		 RGD
GO_Central		 PMID:12824491 GO_REF:0000033 NCBI chr10:82,421,027...82,427,288 JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase involved_in IEA
ISO
ISS		 GO_REF:0000107
MGI:6367625 (PMID:24338473), (PMID:24338687), (PMID:25783190), (PMID:30327125)
(PMID:14522954), (PMID:8132548)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:8132548 PMID:14522954 PMID:24338473 PMID:24338687 PMID:25783190 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 7:110,472,515...110,477,963 JBrowse link
pyridoxal phosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated involved_in ISO (PMID:7550313) RGD PMID:7550313 NCBI chr 5:155,234,770...155,289,785 JBrowse link
G Pdxk pyridoxal kinase involved_in ISO (PMID:31935373), (PMID:33318193) RGD PMID:31935373 PMID:33318193 NCBI chr20:10,209,975...10,232,012 JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in ISO (PMID:31935373) RGD PMID:31935373 NCBI chr10:82,421,027...82,427,288 JBrowse link
pyridoxamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal kinase involved_in ISO (PMID:31935373) RGD PMID:31935373 NCBI chr20:10,209,975...10,232,012 JBrowse link
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in ISO (PMID:31935373) RGD PMID:31935373 NCBI chr10:82,421,027...82,427,288 JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpo pyridoxamine 5'-phosphate oxidase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:82,421,027...82,427,288 JBrowse link
regulation of cobalamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clybl citramalyl-CoA lyase involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:29056341)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:29056341 GO_REF:0000024 GO_REF:0000033 NCBI chr15:105,690,283...105,912,347 JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat1 diacylglycerol O-acyltransferase 1 IMP RGD PMID:18000880 RGD:10400849 NCBI chr 7:110,104,514...110,119,091 JBrowse link
G Isx intestine-specific homeobox acts_upstream_of_or_within ISO MGI:3775943 (PMID:18093975) RGD PMID:18093975 NCBI chr19:13,217,637...13,239,754 JBrowse link
regulation of vitamin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd320 CD320 molecule acts_upstream_of_or_within ISO MGI:3858540 (PMID:23430977) RGD PMID:23430977 NCBI chr 7:14,626,171...14,631,976 JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in ISO
IBA		 (PMID:10823918)
GO_REF:0000033
(PMID:9250660)		 RGD
GO_Central		 PMID:9250660 PMID:10823918 GO_REF:0000033 NCBI chr 1:235,471,368...235,475,204 JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in IMP
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000117
(PMID:10823918)		 GO_Central
UniProt
RGD		 PMID:10823918 PMID:21138835 GO_REF:0000033 GO_REF:0000117, RGD:6771354 NCBI chr 4:118,599,356...118,616,176 JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 involved_in ISO
IBA		 (PMID:14532297)
GO_REF:0000033		 RGD
GO_Central		 PMID:14532297 GO_REF:0000033 NCBI chr 1:235,458,961...235,468,433 JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 involved_in ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:15,291,552...15,296,421 JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:224,226,632...224,234,185 JBrowse link
G Rfk-ps3 riboflavin kinase, pseudogene 3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:106,965,232...106,967,412 JBrowse link
riboflavin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flad1 flavin adenine dinucleotide synthetase 1 involved_in ISO (PMID:28402850) RGD PMID:28402850 NCBI chr 2:174,819,451...174,828,921 JBrowse link
G Rfk riboflavin kinase involved_in ISO (PMID:19641494)
MGI:4356069 (PMID:24272050)		 RGD PMID:19641494 PMID:24272050 NCBI chr 1:224,226,632...224,234,185 JBrowse link
G Rfk-ps3 riboflavin kinase, pseudogene 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:106,965,232...106,967,412 JBrowse link
G Slc52a2 solute carrier family 52 member 2 involved_in ISO (PMID:23911957), (PMID:26791833) RGD PMID:23911957 PMID:26791833 NCBI chr 7:108,246,003...108,267,642 JBrowse link
G Slc52a3 solute carrier family 52 member 3 involved_in IEA
ISO		 GO_REF:0000107
MGI:4363008 (PMID:33116204)		 Ensembl
RGD		 PMID:33116204 GO_REF:0000107 NCBI chr 3:140,498,924...140,515,845 JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc19a2 solute carrier family 19 member 2 involved_in ISO (PMID:8186267) RGD PMID:8186267 NCBI chr13:79,135,118...79,149,316 JBrowse link
G Slc19a3 solute carrier family 19 member 3 involved_in ISO MGI:4948864 (PMID:28665968), (PMID:8186267) RGD PMID:8186267 PMID:28665968 NCBI chr 9:91,723,799...91,747,499 JBrowse link
G Slc25a19 solute carrier family 25 member 19 involved_in ISO MGI:3691853 (PMID:17035501), (PMID:8186267) RGD PMID:8186267 PMID:17035501 NCBI chr10:101,353,426...101,366,551 JBrowse link
G Thtpa thiamine triphosphatase involved_in IEA
ISO		 GO_REF:0000107
(PMID:18276586)		 Ensembl
RGD		 PMID:18276586 GO_REF:0000107 NCBI chr15:32,536,297...32,541,537 JBrowse link
G Tpk1 thiamin pyrophosphokinase 1 involved_in IEA
ISO
IBA		 GO_REF:0000041
(PMID:10567383), (PMID:38547260)
(PMID:11342111), (PMID:38547260)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:10567383 PMID:11342111 PMID:38547260 GO_REF:0000033 GO_REF:0000041 NCBI chr 4:73,170,125...73,557,683 JBrowse link
thiamine diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thtpa thiamine triphosphatase involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:18276586)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:18276586 GO_REF:0000024 GO_REF:0000033 NCBI chr15:32,536,297...32,541,537 JBrowse link
thiamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp3 acid phosphatase 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:18940592)		 Ensembl
RGD		 PMID:18940592 GO_REF:0000107 NCBI chr 8:104,905,570...104,956,146 JBrowse link
G Thtpa thiamine triphosphatase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:32,536,297...32,541,537 JBrowse link
G Tpk1 thiamin pyrophosphokinase 1 acts_upstream_of_or_within ISO (PMID:10567383) RGD PMID:10567383 NCBI chr 4:73,170,125...73,557,683 JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lipa lipase A, lysosomal acid type involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2451080 (PMID:27354281)		 Ensembl
RGD		 PMID:27354281 GO_REF:0000107 NCBI chr 1:241,437,524...241,470,936 JBrowse link
G Lrat lecithin retinol acyltransferase involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:28758396)
(PMID:11108736)		 GO_Central
RGD		 PMID:11108736 PMID:28758396 GO_REF:0000033 NCBI chr 2:170,562,148...170,571,212 JBrowse link
G Rbp1 retinol binding protein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:15632377)		 UniProt
RGD		 PMID:15632377 GO_REF:0000024 NCBI chr 8:107,904,589...107,926,109 JBrowse link
vitamin B6 metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpbp pyridoxal phosphate binding protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:71,705,064...71,717,726 JBrowse link
vitamin D catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 involved_in TAS
IBA
IDA
ISO		 GO_REF:0000033
PMID:16617161
(PMID:16617161), (PMID:24893882), (PMID:29461981), (PMID:8506296), (PMID:8679605)
PMID:10231362		 GO_Central
RGD		 PMID:8506296 PMID:8679605 PMID:16617161 PMID:24893882 PMID:29461981 More... GO_REF:0000033, RGD:625496, RGD:14995311, RGD:14995316 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in IEA
ISO
IBA
IDA		 GO_REF:0000107
(PMID:9295274)
GO_REF:0000033
PMID:9333115		 Ensembl
RGD
GO_Central		 PMID:9295274 PMID:9333115 GO_REF:0000033 GO_REF:0000107, RGD:69373 NCBI chr 7:64,756,626...64,761,570 JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 involved_in ISO (PMID:29461981) RGD PMID:29461981 NCBI chr12:14,321,771...14,343,886 JBrowse link
G Fgf23 fibroblast growth factor 23 involved_in ISO (PMID:15040831) RGD PMID:15040831 NCBI chr 4:159,914,267...159,923,821 JBrowse link
vitamin D metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calb1 calbindin 1 TAS RGD PMID:2792772 RGD:68751 NCBI chr 5:29,375,624...29,402,532 JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO (PMID:15546903) RGD PMID:15546903 NCBI chr 8:66,991,940...66,998,014 JBrowse link
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 acts_upstream_of_or_within IDA
ISO
TAS		 MGI:2182338 (PMID:15225763) RGD PMID:15225763 PMID:1991512 PMID:12372434 RGD:1298844, RGD:734870 NCBI chr 3:179,694,647...179,709,083 JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in TAS
ISO
IDA		 (PMID:9415400) RGD PMID:9415400 PMID:11316734 PMID:9371776 RGD:68680, RGD:69372 NCBI chr 7:64,756,626...64,761,570 JBrowse link
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 acts_upstream_of_or_within ISO (PMID:12867411) RGD PMID:12867411 NCBI chr 1:178,166,984...178,232,191 JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 involved_in ISO (PMID:15546903) RGD PMID:15546903 NCBI chr12:14,321,771...14,343,886 JBrowse link
G Fgf23 fibroblast growth factor 23 IEP RGD PMID:15531762 RGD:1598934 NCBI chr 4:159,914,267...159,923,821 JBrowse link
G Gc GC, vitamin D binding protein involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:15225763)		 Ensembl
GO_Central
RGD		 PMID:15225763 GO_REF:0000033 GO_REF:0000107 NCBI chr14:18,916,255...18,951,670 JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10052453)		 Ensembl
RGD		 PMID:10052453 GO_REF:0000107 NCBI chr 3:74,597,148...74,754,535 JBrowse link
vitamin D3 metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:28798354) RGD PMID:28798354 NCBI chr 1:22,518,051...22,583,044 JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:95525 (PMID:24259513) RGD PMID:24259513 NCBI chr16:73,194,631...73,249,855 JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO MGI:95522 (PMID:24259513) RGD PMID:24259513 NCBI chr17:9,461,541...9,476,268 JBrowse link
G Ugt1a2 UDP glucuronosyltransferase 1 family, polypeptide A2 involved_in ISO (PMID:23756265) RGD PMID:23756265 NCBI chr 9:96,239,019...96,256,264 JBrowse link
G Ugt1a3 UDP glycosyltransferase 1 family, polypeptide A3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 9:88,780,328...88,808,465 JBrowse link
G Ugt1a5 UDP glucuronosyltransferase family 1 member A5 involved_in ISO (PMID:18177842), (PMID:24641623) RGD PMID:18177842 PMID:24641623 NCBI chr 9:88,762,250...88,808,465 JBrowse link
vitamin E biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pltp phospholipid transfer protein acts_upstream_of_or_within ISO MGI:2176342 (PMID:16467369) RGD PMID:16467369 NCBI chr 3:153,574,825...153,592,647 JBrowse link
vitamin E metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 IEP RGD PMID:16520233 RGD:401900296 NCBI chr 8:66,971,261...66,978,149 JBrowse link
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 involved_in ISO (PMID:28315682) RGD PMID:28315682 NCBI chr14:85,285,387...85,305,050 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9271353)		 UniProt
RGD		 PMID:9271353 GO_REF:0000024 NCBI chr19:52,205,374...52,220,267 JBrowse link
G Ttpa alpha tocopherol transfer protein involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:19923370)
MGI:1932559|MGI:2386172 (PMID:11076932), (PMID:11095717), (PMID:16014812)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:11076932 PMID:11095717 PMID:16014812 PMID:19923370 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:38,294,415...38,315,471 JBrowse link
vitamin K biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:20953171), (PMID:23169578)		 UniProt
GO_Central
RGD		 PMID:20953171 PMID:23169578 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:158,856,582...158,880,490 JBrowse link
vitamin K metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07039936.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Aifm2 AIF family member 2 involved_in ISO (PMID:35922516) RGD PMID:35922516 NCBI chr20:29,654,283...29,679,239 JBrowse link
G Cbr1 carbonyl reductase 1 involved_in ISO
ISS		 (PMID:18449627)
GO_REF:0000024		 RGD
UniProt		 PMID:18449627 GO_REF:0000024 NCBI chr11:46,346,405...46,348,815 JBrowse link
G Cbr1l1 carbonyl reductase 1 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:32,876,563...32,884,234 JBrowse link
G Cbr1l2 carbonyl reductase 1 like 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:32,892,640...32,895,277 JBrowse link
G Crcp CGRP receptor component involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:26,623,968...26,659,756 JBrowse link
G ENSRNOG00000070855 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ggcx gamma-glutamyl carboxylase involved_in IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:6198558 (PMID:37171959)
(PMID:17073445)		 Ensembl
GO_Central
RGD		 PMID:17073445 PMID:37171959 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:106,027,918...106,043,653 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 involved_in IDA
ISO		 PMID:8999809
(PMID:8999809)		 RGD PMID:8999809 PMID:8999809 RGD:151356617 NCBI chr19:52,205,374...52,220,267 JBrowse link
G Vkorc1 vitamin K epoxide reductase complex, subunit 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA
IEA		 GO_REF:0000024
MGI:5560512 (PMID:19492146), (PMID:23928358)
(PMID:15879509)
GO_REF:0000033
(PMID:16270630), (PMID:33154105)
GO_REF:0000002		 UniProt
RGD
GO_Central
InterPro		 PMID:15879509 PMID:16270630 PMID:19492146 PMID:23928358 PMID:33154105 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:191,932,969...191,935,490 JBrowse link
G Vkorc1l1 vitamin K epoxide reductase complex, subunit 1-like 1 involved_in ISO
IBA
IEA
IDA		 (PMID:21367861)
MGI:106442 (PMID:23928358)
GO_REF:0000033
GO_REF:0000002		 RGD
GO_Central
InterPro		 PMID:21367861 PMID:23928358 PMID:23928358 GO_REF:0000002 GO_REF:0000033, RGD:8553362 NCBI chr12:32,354,078...32,404,327 JBrowse link
Term paths to the root
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Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      metabolic process 12157
        small molecule metabolic process 1918
          vitamin metabolic process 107
            fat-soluble vitamin metabolic process + 48
            negative regulation of vitamin metabolic process + 7
            positive regulation of vitamin metabolic process + 5
            regulation of vitamin metabolic process + 15
            vitamin biosynthetic process + 28
            vitamin catabolic process + 14
            water-soluble vitamin metabolic process + 54
paths to the root