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ONTOLOGY REPORT - ANNOTATIONS

Term:polyamine biosynthetic process
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Accession:GO:0006596 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
Synonyms:exact_synonym: polyamine anabolism;   polyamine biosynthesis;   polyamine formation;   polyamine synthesis
 xref: Reactome:R-HSA-351200 "Interconversion of polyamines"


show annotations for term's descendants           Sort by:
polyamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:43,695,783...43,711,476
Ensembl chr20:43,697,237...43,711,476 		JBrowse link
G Azin1 antizyme inhibitor 1 involved_in IEA GO_REF:0000002
GO_REF:0000043		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:71,539,711...71,566,515
Ensembl chr 7:69,654,663...69,681,578 		JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397 		JBrowse link
G Ldc1 leucine decarboxylase 1 involved_in IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 5:142,551,120...142,563,217
Ensembl chr 5:142,552,008...142,563,074 		JBrowse link
G LOC120101528 spermidine synthase-like involved_in IEA GO_REF:0000104
GO_REF:0000043		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 3:18,709,548...18,710,782
Ensembl chr 3:18,709,584...18,710,588 		JBrowse link
G Oaz1 ornithine decarboxylase antizyme 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:9,534,530...9,536,990
Ensembl chr 7:8,883,851...8,886,310 		JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in IEA GO_REF:0000043
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:40,329,964...40,336,440 		JBrowse link
G Sat1 spermidine/spermine N1-acetyl transferase 1 involved_in ISO (PMID:15283699) RGD PMID:15283699 NCBI chr  X:44,008,089...44,011,376
Ensembl chr  X:40,157,046...40,196,813 		JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in ISO (PMID:15283699) RGD PMID:15283699 NCBI chr10:54,340,756...54,343,507
Ensembl chr10:54,340,372...54,343,224 		JBrowse link
G Sms spermine synthase involved_in IEA GO_REF:0000104
GO_REF:0000043		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr  X:41,331,693...41,387,713
Ensembl chr  X:37,516,931...37,570,822
Ensembl chr 3:37,516,931...37,570,822 		JBrowse link
G Smsl1 spermine synthase like 1 involved_in IEA GO_REF:0000043
GO_REF:0000104		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr13:82,435,500...82,436,942
Ensembl chr13:82,435,520...82,437,158 		JBrowse link
G Srm spermidine synthase involved_in IEA GO_REF:0000043
GO_REF:0000104		 UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 5:164,309,002...164,312,203
Ensembl chr 5:159,025,873...159,029,405 		JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase involved_in ISO
IEA		 (PMID:16354669)
GO_REF:0000107		 RGD
Ensembl		 PMID:16354669 GO_REF:0000107 NCBI chr 1:204,349,326...204,358,140
Ensembl chr 1:194,903,273...194,928,504 		JBrowse link
putrescine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odc1 ornithine decarboxylase 1 IDA RGD PMID:10430362 PMID:1415709 RGD:1578320, RGD:7242912 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:40,329,964...40,336,440 		JBrowse link
G Paox polyamine oxidase involved_in ISO
IEA		 (PMID:16354669)
GO_REF:0000107		 RGD
Ensembl		 PMID:16354669 GO_REF:0000107 NCBI chr 1:204,349,326...204,358,140
Ensembl chr 1:194,903,273...194,928,504 		JBrowse link
putrescine biosynthetic process from arginine, via agmatine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:159,326,680...159,357,300
Ensembl chr 5:154,060,151...154,074,276 		JBrowse link
putrescine biosynthetic process from arginine, via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:71,539,711...71,566,515
Ensembl chr 7:69,654,663...69,681,578 		JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397 		JBrowse link
G Ldc1 leucine decarboxylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:142,551,120...142,563,217
Ensembl chr 5:142,552,008...142,563,074 		JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000041
GO_REF:0000033
(PMID:24967154)
GO_REF:0000107		 UniProt
GO_Central
RGD
Ensembl		 PMID:24967154 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 NCBI chr 6:46,058,439...46,065,148
Ensembl chr 6:40,329,964...40,336,440 		JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in IDA
IMP
IBA
IEA		 GO_REF:0000033
GO_REF:0000043
GO_REF:0000002		 GO_Central
UniProt
InterPro
RGD		 PMID:10430362 PMID:10712236 PMID:1415709 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chr20:43,695,783...43,711,476
Ensembl chr20:43,697,237...43,711,476 		JBrowse link
G LOC120101528 spermidine synthase-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:18,709,548...18,710,782
Ensembl chr 3:18,709,584...18,710,588 		JBrowse link
G Srm spermidine synthase involved_in IDA
IBA
ISO
IMP		 GO_REF:0000033
(PMID:17585781)		 GO_Central
RGD		 PMID:17585781 PMID:12843627 PMID:8494549 PMID:16931179 GO_REF:0000033, RGD:1359042, RGD:7242928, RGD:7242920 NCBI chr 5:164,309,002...164,312,203
Ensembl chr 5:159,025,873...159,029,405 		JBrowse link
spermine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 involved_in IDA
IBA
IEA
IMP		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro
RGD		 PMID:10430362 PMID:1415709 PMID:10712236 GO_REF:0000002 GO_REF:0000033, RGD:1578320, RGD:7242912, RGD:7242911 NCBI chr20:43,695,783...43,711,476
Ensembl chr20:43,697,237...43,711,476 		JBrowse link
G Sms spermine synthase involved_in IMP
IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central
RGD		 PMID:8494549 GO_REF:0000002 GO_REF:0000033, RGD:7242928 NCBI chr  X:41,331,693...41,387,713
Ensembl chr  X:37,516,931...37,570,822
Ensembl chr 3:37,516,931...37,570,822 		JBrowse link
G Smsl1 spermine synthase like 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr13:82,435,500...82,436,942
Ensembl chr13:82,435,520...82,437,158 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        amine metabolic process 127
          biogenic amine metabolic process 115
            polyamine metabolic process 23
              polyamine biosynthetic process 14
                negative regulation of polyamine biosynthetic process + 0
                nor-spermidine biosynthetic process 0
                putrescine biosynthetic process + 6
                regulation of polyamine biosynthetic process + 1
                spermidine biosynthetic process + 4
                spermine biosynthetic process 3
                thermospermine biosynthetic process 0
                trimethylenediamine biosynthetic process 0
paths to the root