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ONTOLOGY REPORT - ANNOTATIONS

Term:L-serine biosynthetic process
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Accession:GO:0006564 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
Synonyms:exact_synonym: L-serine anabolism;   L-serine biosynthesis;   L-serine formation;   L-serine synthesis
 xref: MetaCyc:SERSYN-PWY;   Reactome:R-HSA-977347 "Serine biosynthesis"


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L-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011698.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:153,941,154...153,942,719 JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:188,595,700...188,624,789
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in ISO
IBA		 (PMID:37627284)
GO_REF:0000033		 RGD
GO_Central		 PMID:37627284 GO_REF:0000033 NCBI chr 1:222,623,553...222,646,187
Ensembl chr 1:213,196,709...213,218,682 		JBrowse link
G Psph phosphoserine phosphatase involved_in ISS
ISO
IBA		 GO_REF:0000024
(PMID:14673469)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:14673469 GO_REF:0000024 GO_REF:0000033 NCBI chr12:32,527,091...32,541,182
Ensembl chr12:26,883,133...26,905,074 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IDA RGD PMID:10457370 RGD:2300380 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      metabolic process 12171
        biosynthetic process 8663
          amino acid biosynthetic process 78
            alpha-amino acid biosynthetic process 69
              serine family amino acid biosynthetic process 18
                L-serine biosynthetic process 5
Path 2
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      metabolic process 12171
        small molecule metabolic process 1918
          organic acid metabolic process 1043
            oxoacid metabolic process 1022
              carboxylic acid metabolic process 1007
                alpha-amino acid metabolic process 222
                  serine family amino acid metabolic process 37
                    L-serine metabolic process 11
                      L-serine biosynthetic process 5
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