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ONTOLOGY REPORT - ANNOTATIONS

Term:'de novo' pyrimidine nucleobase biosynthetic process
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Accession:GO:0006207 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
Synonyms:exact_synonym: 'de novo' pyrimidine base anabolism;   'de novo' pyrimidine base biosynthesis;   'de novo' pyrimidine base biosynthetic process;   'de novo' pyrimidine base formation;   'de novo' pyrimidine base synthesis


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'de novo' pyrimidine nucleobase biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA
ISO
IBA
IEA 		(PMID:24332717)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000107 		RGD
GO_Central
InterPro
Ensembl		 PMID:24332717 PMID:1476792 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:5132591 NCBI chr 6:31,012,091...31,035,098
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:133,717,073...133,744,623
Ensembl chr 5:128,480,301...128,507,830 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:76,063,863...76,186,739
Ensembl chr 9:68,614,153...68,737,033 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in IDA
IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central
RGD		 PMID:1476792 GO_REF:0000002 GO_REF:0000033, RGD:5132591 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA
ISO 		GO_REF:0000107
(PMID:23429704) 		Ensembl
RGD		 PMID:23429704 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        biosynthetic process 8630
          nucleobase biosynthetic process 17
            pyrimidine nucleobase biosynthetic process 8
              'de novo' pyrimidine nucleobase biosynthetic process 6
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing small molecule metabolic process 730
              nucleobase metabolic process 45
                pyrimidine nucleobase metabolic process 22
                  pyrimidine nucleobase biosynthetic process 8
                    'de novo' pyrimidine nucleobase biosynthetic process 6
paths to the root