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ONTOLOGY REPORT - ANNOTATIONS


Term:glycogen catabolic process
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Accession:GO:0005980 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues.
Synonyms:exact_synonym: glycogen breakdown;   glycogen catabolism;   glycogen degradation;   glycogenolysis
 xref: Reactome:R-HSA-70221 "Glycogen breakdown (glycogenolysis)"



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glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919
JBrowse link
G Adrb1 adrenoceptor beta 1 IDA RGD PMID:17911346 RGD:5129142 NCBI chr 1:265,777,103...265,780,114
Ensembl chr 1:255,771,597...255,807,259
JBrowse link
G Agl amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase involved_in IMP
IEA
ISO
IBA
IDA
GO_REF:0000002
GO_REF:0000107
MGI:4432988|MGI:5661387 (PMID:24613482), (PMID:25092169)
GO_REF:0000033
InterPro
Ensembl
RGD
GO_Central
PMID:24613482 PMID:25092169 PMID:9281456 PMID:6449198 PMID:11766064 More... GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:1598779, RGD:1642743, RGD:2304191, RGD:1642741 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828
JBrowse link
G G6pc1 glucose-6-phosphatase catalytic subunit 1 acts_upstream_of_or_within ISO
IEA
MGI:2387343 (PMID:10625614)
GO_REF:0000107
RGD
Ensembl
PMID:10625614 GO_REF:0000107 NCBI chr10:86,807,659...86,819,023
Ensembl chr10:86,257,668...86,333,804
JBrowse link
G Gaa alpha glucosidase involved_in
acts_upstream_of_or_within
IMP
IBA
ISO
IDA
GO_REF:0000033
MGI:2148550|MGI:2179955|MGI:2179960|MGI:2179961 (PMID:10838256), (PMID:11328962), (PMID:11785984)
(PMID:29061980), (PMID:9505277)
GO_Central
RGD
PMID:9505277 PMID:10838256 PMID:11328962 PMID:11785984 PMID:29061980 More... GO_REF:0000033, RGD:1599504, RGD:1599506 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836
JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Pfkm phosphofructokinase, muscle acts_upstream_of_or_within ISO
IEA
MGI:4356541 (PMID:19696889)
GO_REF:0000107
RGD
Ensembl
PMID:19696889 GO_REF:0000107 NCBI chr 7:131,100,684...131,138,250
Ensembl chr 7:129,221,653...129,259,192
JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in ISO
IEA
(PMID:927504)
GO_REF:0000107
RGD
Ensembl
PMID:927504 GO_REF:0000107 NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967
JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in ISO
IEA
MGI:5629316 (PMID:34083142)
GO_REF:0000107
RGD
Ensembl
PMID:34083142 GO_REF:0000107 NCBI chr 1:191,614,738...191,627,615
Ensembl chr 1:182,184,650...182,197,124
JBrowse link
G Pygb glycogen phosphorylase B involved_in IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:32446205)
GO_REF:0000033
GO_REF:0000117
Ensembl
RGD
GO_Central
UniProt
PMID:32446205 PMID:16226229 PMID:11071367 PMID:10634496 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1642804, RGD:2304126, RGD:1642809 NCBI chr 3:160,072,141...160,118,930
Ensembl chr 3:139,611,749...139,663,553
JBrowse link
G Pygl glycogen phosphorylase L involved_in IDA
IEA
ISO
IBA
GO_REF:0000117
MGI:4362669 (PMID:31701076), (PMID:36077341)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:31701076 PMID:36077341 PMID:15152027 PMID:6449198 PMID:114169 GO_REF:0000033 GO_REF:0000117, RGD:1642805, RGD:1642743, RGD:2304128 NCBI chr 6:94,433,558...94,476,219
Ensembl chr 6:88,697,593...88,740,310
JBrowse link
G Pygm glycogen phosphorylase, muscle associated acts_upstream_of_or_within
involved_in
IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:15282316), (PMID:17689562)
MGI:5696972 (PMID:31511858)
GO_REF:0000033
GO_REF:0000117
(PMID:1150650), (PMID:8316268)
Ensembl
RGD
GO_Central
UniProt
PMID:1150650 PMID:8316268 PMID:15282316 PMID:17689562 PMID:31511858 More... GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1599986, RGD:1642743, RGD:1599897, RGD:2304126, RGD:1642811 NCBI chr 1:213,119,805...213,134,622
Ensembl chr 1:203,690,533...203,705,368
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
IEA
ISS
(PMID:20810658)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
GO_Central
PMID:20810658 GO_REF:0000024 GO_REF:0000107 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
glycophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg12 autophagy related 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418
JBrowse link
G Atg2a autophagy related 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:203,542,559...203,562,242
Ensembl chr 1:203,542,559...203,562,242
JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:124,522,283...124,592,412
Ensembl chr 6:124,525,523...124,592,015
JBrowse link
G Atg3 autophagy related 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:55,624,914...55,653,249
Ensembl chr11:55,624,917...55,653,224
JBrowse link
G Gaa alpha glucosidase involved_in ISO MGI:2148550 (PMID:12739885) RGD PMID:12739885 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836
JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in ISO (PMID:20810658) RGD PMID:20810658 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450
JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:13,161,648...13,225,560
Ensembl chr 5:13,161,648...13,225,560
JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO
ISS
IEA
(PMID:20810658)
GO_REF:0000024
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:20810658 GO_REF:0000024 GO_REF:0000107 NCBI chr14:15,470,452...15,473,857
Ensembl chr14:15,469,582...15,477,443
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:106,597,558...106,629,488
Ensembl chr10:106,599,364...106,629,441
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:11,911,369...11,939,799
Ensembl chr12:11,911,337...11,939,794
JBrowse link
negative regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919
JBrowse link
G Ins2 insulin 2 involved_in ISO (PMID:381941) RGD PMID:381941 NCBI chr 1:207,272,738...207,421,998
Ensembl chr 1:197,843,281...197,864,775
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in ISO
IEA
(PMID:22225877)
GO_REF:0000107
RGD
Ensembl
PMID:22225877 GO_REF:0000107 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:56,829,660...56,842,406
JBrowse link
positive regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 IMP RGD PMID:22998876 RGD:329412477 NCBI chr13:77,747,752...77,833,952
Ensembl chr13:77,768,468...77,833,951
JBrowse link
G Adra1b adrenoceptor alpha 1B acts_upstream_of_or_within ISO MGI:2148638 (PMID:14581480) RGD PMID:14581480 NCBI chr10:28,255,025...28,373,418
Ensembl chr10:28,255,025...28,312,919
JBrowse link
G Avpr1a arginine vasopressin receptor 1A involved_in NAS PMID:1560825 UniProt PMID:1560825 RGD:1298691 NCBI chr 7:58,114,306...58,118,230
Ensembl chr 7:58,114,284...58,122,215
JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 involved_in ISO
IEA
(PMID:33799212)
GO_REF:0000107
RGD
Ensembl
PMID:33799212 GO_REF:0000107 NCBI chr  X:71,639,701...71,778,465
Ensembl chr  X:67,601,302...67,738,455
JBrowse link
G Phkb phosphorylase kinase regulatory subunit beta involved_in ISO (PMID:36077341) RGD PMID:36077341 NCBI chr19:37,179,937...37,383,979
Ensembl chr19:21,025,733...21,210,633
JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 involved_in ISO
IMP
IEA
MGI:5629316 (PMID:34083142)
PMID:6615485
GO_REF:0000107
RGD
Ensembl
PMID:34083142 PMID:6615485 GO_REF:0000107, RGD:405650328 NCBI chr 1:191,614,738...191,627,615
Ensembl chr 1:182,184,650...182,197,124
JBrowse link
regulation of glycogen catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp1ca protein phosphatase 1 catalytic subunit alpha IDA RGD PMID:7720853 RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:201,485,085...201,497,327
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta IDA RGD PMID:7720853 RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:23,960,998...23,992,824
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B involved_in IDA
IEA
GO_REF:0000002 InterPro
RGD
PMID:7720853 PMID:11716774 GO_REF:0000002, RGD:2304267, RGD:2306167 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:56,829,660...56,842,406
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:234,460,652...234,465,961
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:165,502,384...165,505,455
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        generation of precursor metabolites and energy 560
          energy derivation by oxidation of organic compounds 380
            energy reserve metabolic process 115
              glycogen metabolic process 102
                glycogen catabolic process 34
                  glycogen catabolic process via dextrin 0
                  glycogen catabolic process via dextrin and maltose 0
                  glycophagy 12
                  negative regulation of glycogen catabolic process 3
                  positive regulation of glycogen catabolic process 7
                  regulation of glycogen catabolic process + 14
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          carbohydrate metabolic process 650
            polysaccharide metabolic process 122
              glucan metabolic process 104
                glucan catabolic process 35
                  glycogen catabolic process 34
                    glycogen catabolic process via dextrin 0
                    glycogen catabolic process via dextrin and maltose 0
                    glycophagy 12
                    negative regulation of glycogen catabolic process 3
                    positive regulation of glycogen catabolic process 7
                    regulation of glycogen catabolic process + 14
paths to the root