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ONTOLOGY REPORT - ANNOTATIONS

Term:clathrin-coated pit
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Accession:GO:0005905 term browser browse the term
Definition:A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
Synonyms:exact_synonym: coated pit
 xref: NIF_Subcellular:sao1969557946

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clathrin-coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aak1 AP2 associated kinase 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936491:13,720,687...13,897,899
Ensembl chrNW_004936491:13,729,727...13,897,923 		JBrowse link
G Ackr3 atypical chemokine receptor 3 located_in ISO (PMID:22457824) UniProt PMID:22457824 NCBI chrNW_004936525:1,559,575...1,570,679 JBrowse link
G Adcy8 adenylate cyclase 8 located_in ISO PMID:19158400 UniProt PMID:19158400 RGD:13800545 NCBI chrNW_004936470:17,831,644...18,047,868
Ensembl chrNW_004936470:17,831,639...18,047,868 		JBrowse link
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936543:1,052,692...1,058,070
Ensembl chrNW_004936543:1,052,732...1,058,483 		JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936470:5,260,984...5,301,552
Ensembl chrNW_004936470:5,257,542...5,289,469 		JBrowse link
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936664:3,562,800...3,596,983
Ensembl chrNW_004936664:3,562,798...3,599,791 		JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936888:689,673...735,119
Ensembl chrNW_004936888:689,727...733,541 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936578:5,680,748...5,691,666
Ensembl chrNW_004936578:5,682,541...5,689,521 		JBrowse link
G Arrb1 arrestin beta 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936498:4,089,621...4,172,749
Ensembl chrNW_004936498:4,094,893...4,172,755 		JBrowse link
G Atat1 alpha tubulin acetyltransferase 1 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936837:300,765...319,742
Ensembl chrNW_004936837:300,715...319,623 		JBrowse link
G Bcl2l1 BCL2 like 1 located_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 located_in
is_active_in		 IEA
ISO		 (PMID:16923969) Ensembl
MGI		 PMID:16923969 GO_REF:0000107 NCBI chrNW_004936726:1,543,263...1,711,422
Ensembl chrNW_004936726:1,543,245...1,704,541 		JBrowse link
G Ccdc32 coiled-coil domain containing 32 located_in
part_of		 IEA
ISO		 (PMID:33859415) Ensembl
UniProt		 PMID:33859415 GO_REF:0000107 NCBI chrNW_004936471:4,016,063...4,028,040
Ensembl chrNW_004936471:4,015,824...4,028,070 		JBrowse link
G Cdhr5 cadherin related family member 5 ISO RGD PMID:10801787 RGD:633361 NCBI chrNW_004936888:449,846...457,881
Ensembl chrNW_004936888:449,976...457,618 		JBrowse link
G Clta clathrin light chain A located_in ISO
IEA		 RGD
UniProt		 PMID:14985443 GO_REF:0000043 RGD:2301373 NCBI chrNW_004936524:4,170,425...4,191,951
Ensembl chrNW_004936524:4,169,732...4,191,951 		JBrowse link
G Cltb clathrin light chain B located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936597:665,365...689,867
Ensembl chrNW_004936597:662,725...689,873 		JBrowse link
G Cltc clathrin heavy chain located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936490:3,659,682...3,726,222
Ensembl chrNW_004936490:3,657,242...3,726,274 		JBrowse link
G Cltcl1 clathrin heavy chain like 1 located_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936619:3,181,890...3,276,305
Ensembl chrNW_004936619:3,181,516...3,276,328 		JBrowse link
G Cttn cortactin located_in ISO PMID:19995918 UniProt PMID:19995918 RGD:10047197 NCBI chrNW_004936599:481,234...503,857
Ensembl chrNW_004936599:481,243...501,743 		JBrowse link
G Cubn cubilin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:10,140,784...10,410,082
Ensembl chrNW_004936520:10,140,784...10,409,851 		JBrowse link
G Dab2 DAB adaptor protein 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936518:2,915,819...2,936,474
Ensembl chrNW_004936518:2,915,764...2,937,875 		JBrowse link
G Dgkd diacylglycerol kinase delta located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:3,826,929...3,897,618
Ensembl chrNW_004936525:3,828,939...3,897,529 		JBrowse link
G Dnm1 dynamin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,767,897...15,797,722
Ensembl chrNW_004936487:15,767,897...15,801,211 		JBrowse link
G Dnm1l dynamin 1 like located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936607:3,576,357...3,632,423
Ensembl chrNW_004936607:3,576,392...3,632,554 		JBrowse link
G Dnm2 dynamin 2 located_in ISO (PMID:26437238)
PMID:19995918		 RGD
MGI
UniProt		 PMID:9725914 PMID:19995918 PMID:26437238 RGD:10047197 RGD:9685132 NCBI chrNW_004936659:957,408...1,046,393
Ensembl chrNW_004936659:957,392...1,049,188 		JBrowse link
G Epn3 epsin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,174,552...11,184,516
Ensembl chrNW_004936490:11,174,276...11,184,517 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 located_in ISO (PMID:20427320) MGI PMID:20427320 NCBI chrNW_004936522:9,438,929...9,486,781 JBrowse link
G Fcho1 FCH and mu domain containing endocytic adaptor 1 located_in
is_active_in		 IEA
ISO		 (PMID:20448150) TreeGrafter
UniProt
ParkinsonsUK-UCL
Ensembl		 PMID:20448150 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936596:3,234,603...3,265,484
Ensembl chrNW_004936596:3,252,826...3,265,359 		JBrowse link
G Fcho2 FCH and mu domain containing endocytic adaptor 2 is_active_in
located_in		 ISO
IEA		 (PMID:20448150) ParkinsonsUK-UCL
TreeGrafter
UniProt
Ensembl		 PMID:20448150 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:3,455,172...3,565,507
Ensembl chrNW_004936549:3,455,172...3,565,558 		JBrowse link
G Fchsd2 FCH and double SH3 domains 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:2,089,069...2,344,007
Ensembl chrNW_004936498:2,086,282...2,344,708 		JBrowse link
G Gas7 growth arrest specific 7 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936595:2,890,336...3,011,314
Ensembl chrNW_004936595:2,894,643...2,993,545 		JBrowse link
G Hip1r huntingtin interacting protein 1 related located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:1,778,862...1,804,071
Ensembl chrNW_004936558:1,778,888...1,791,610 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 located_in ISO (PMID:11807771) BHF-UCL PMID:11807771 NCBI chrNW_004936506:1,678,069...1,687,632 JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:9,123,176...9,166,715
Ensembl chrNW_004936486:9,123,119...9,188,117 		JBrowse link
G Itsn1 intersectin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:19258322 GO_REF:0000107 RGD:13461864 NCBI chrNW_004936500:8,490,514...8,678,127
Ensembl chrNW_004936500:8,468,940...8,612,942 		JBrowse link
G Ldlr low density lipoprotein receptor located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,259,405...1,300,545
Ensembl chrNW_004936659:1,259,369...1,302,294 		JBrowse link
G LOC101955400 AP-1 complex subunit sigma-3 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936569:5,574,591...5,604,948
Ensembl chrNW_004936569:5,490,319...5,544,250
Ensembl chrNW_004936569:5,490,319...5,544,250 		JBrowse link
G LOC101956075 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:1,572,355...1,574,123 JBrowse link
G LOC101965647 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936551:5,183,603...5,184,596 JBrowse link
G LOC101970551 inhibitor of carbonic anhydrase located_in ISO (PMID:20427320) MGI PMID:20427320 NCBI chrNW_004936529:6,856,042...6,895,989 JBrowse link
G LOC101970831 serotransferrin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,917,762...6,947,512
Ensembl chrNW_004936529:6,855,958...6,947,394 		JBrowse link
G LOC101972345 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936813:60,226...61,166 JBrowse link
G LOC101977610 growth arrest-specific protein 7-like located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:18,113,277...18,114,184 JBrowse link
G Lrp10 LDL receptor related protein 10 located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936722:1,421,396...1,427,439
Ensembl chrNW_004936722:1,419,259...1,427,497 		JBrowse link
G Lrp12 LDL receptor related protein 12 located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:39,459,395...39,542,125
Ensembl chrNW_004936470:39,459,002...39,544,577 		JBrowse link
G Lrp2 LDL receptor related protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:10,245,001...10,438,933
Ensembl chrNW_004936469:10,244,881...10,438,935 		JBrowse link
G Lrp3 LDL receptor related protein 3 located_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936570:2,590,893...2,602,749
Ensembl chrNW_004936570:2,587,284...2,601,203 		JBrowse link
G Myo6 myosin VI NOT|located_in ISO (PMID:12857860) UniProt PMID:12857860 NCBI chrNW_004936788:1,125,332...1,264,372
Ensembl chrNW_004936788:1,174,544...1,262,746 		JBrowse link
G Necap1 NECAP endocytosis associated 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936892:372,743...385,127
Ensembl chrNW_004936892:372,284...385,202 		JBrowse link
G Numb NUMB endocytic adaptor protein located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chrNW_004936488:2,579,017...2,742,961 JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:13,785,638...13,885,931
Ensembl chrNW_004936498:13,784,886...13,886,167 		JBrowse link
G Rab35 RAB35, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:795,477...812,187
Ensembl chrNW_004936668:800,854...810,128 		JBrowse link
G Reps1 RALBP1 associated Eps domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:5,981,037...6,057,059
Ensembl chrNW_004936560:5,981,244...6,056,984 		JBrowse link
G Sele selectin E located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:16,915,203...16,921,840
Ensembl chrNW_004936481:16,915,182...16,921,840 		JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 located_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000043 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936591:4,815,222...5,015,250
Ensembl chrNW_004936591:4,817,184...5,016,140 		JBrowse link
G Sh3bp4 SH3 domain binding protein 4 located_in IEA UniProt GO_REF:0000043 GO_REF:0000044 NCBI chrNW_004936525:2,693,828...2,757,480
Ensembl chrNW_004936525:2,692,786...2,707,177 		JBrowse link
G Slc2a4 solute carrier family 2 member 4 ISO RGD PMID:1881917 RGD:2306204 NCBI chrNW_004936595:567,267...574,051
Ensembl chrNW_004936595:567,219...574,059 		JBrowse link
G Snap91 synaptosome associated protein 91 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936510:7,222,200...7,345,138
Ensembl chrNW_004936510:7,223,757...7,343,742 		JBrowse link
G Snx9 sorting nexin 9 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:9,736,255...9,804,841
Ensembl chrNW_004936489:9,736,242...9,804,874 		JBrowse link
G Sort1 sortilin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:832,651...901,658
Ensembl chrNW_004936704:837,057...901,392 		JBrowse link
G Sphk1 sphingosine kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,482,830...1,489,337
Ensembl chrNW_004936594:1,486,111...1,489,188 		JBrowse link
G Ston1 stonin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:4,068,102...4,116,166
Ensembl chrNW_004936508:4,065,711...4,116,652 		JBrowse link
G Tfap2a transcription factor AP-2 alpha located_in ISO (PMID:26437238) MGI PMID:26437238 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
G Tfrc transferrin receptor located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936784:696,738...728,385
Ensembl chrNW_004936784:696,713...728,543 		JBrowse link
G Tnk2 tyrosine kinase non receptor 2 located_in ISO (PMID:21169560) UniProt PMID:21169560 NCBI chrNW_004936784:636,105...685,080
Ensembl chrNW_004936784:636,139...685,210 		JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 part_of IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936664:3,562,800...3,596,983
Ensembl chrNW_004936664:3,562,798...3,599,791 		JBrowse link
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 part_of IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936888:689,673...735,119
Ensembl chrNW_004936888:689,727...733,541 		JBrowse link
G Ap2b1 adaptor related protein complex 2 subunit beta 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:5,156...127,666
Ensembl chrNW_004936490:12,233...127,715 		JBrowse link
G Ap2m1 adaptor related protein complex 2 subunit mu 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:5,680,748...5,691,666
Ensembl chrNW_004936578:5,682,541...5,689,521 		JBrowse link
G Btbd8 BTB domain containing 8 located_in ISO PMID:29262337 UniProt PMID:29262337 RGD:13601995 NCBI chrNW_004936537:6,899,271...6,977,420
Ensembl chrNW_004936537:6,895,569...6,915,849 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of ISO (PMID:17626015) UniProt PMID:17626015 NCBI chrNW_004936522:9,438,929...9,486,781 JBrowse link
G Sgip1 SH3GL interacting endocytic adaptor 1 part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936591:4,815,222...5,015,250
Ensembl chrNW_004936591:4,817,184...5,016,140 		JBrowse link
G Slc18a3 solute carrier family 18 member A3 part_of ISO
IEA		 RGD
TreeGrafter		 PMID:14724281 GO_REF:0000118 RGD:2317430 NCBI chrNW_004936728:703,688...706,317
Ensembl chrNW_004936728:704,290...705,885 		JBrowse link
G Tbc1d5 TBC1 domain family member 5 part_of
located_in		 IEA
ISO		 (PMID:24603492) Ensembl
UniProt		 PMID:24603492 GO_REF:0000107 NCBI chrNW_004936473:9,868,657...10,294,554
Ensembl chrNW_004936473:9,868,430...10,188,484 		JBrowse link
clathrin coat of coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin light chain A part_of IEA InterPro GO_REF:0000002 NCBI chrNW_004936524:4,170,425...4,191,951
Ensembl chrNW_004936524:4,169,732...4,191,951 		JBrowse link
G Cltb clathrin light chain B part_of IEA InterPro GO_REF:0000002 NCBI chrNW_004936597:665,365...689,867
Ensembl chrNW_004936597:662,725...689,873 		JBrowse link
G Cltc clathrin heavy chain part_of IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:3,659,682...3,726,222
Ensembl chrNW_004936490:3,657,242...3,726,274 		JBrowse link
G Cltcl1 clathrin heavy chain like 1 part_of IEA InterPro GO_REF:0000002 NCBI chrNW_004936619:3,181,890...3,276,305
Ensembl chrNW_004936619:3,181,516...3,276,328 		JBrowse link
G Dab2 DAB adaptor protein 2 part_of ISO (PMID:11247302) UniProt PMID:11247302 NCBI chrNW_004936518:2,915,819...2,936,474
Ensembl chrNW_004936518:2,915,764...2,937,875 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936522:9,438,929...9,486,781 JBrowse link
G Eps15l1 epidermal growth factor receptor pathway substrate 15 like 1 part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:4,142,951...4,241,719
Ensembl chrNW_004936596:4,142,895...4,247,976 		JBrowse link
G LOC101969002 epidermal growth factor receptor substrate 15-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004937146:133,312...136,047 JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein part_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:13,785,638...13,885,931
Ensembl chrNW_004936498:13,784,886...13,886,167 		JBrowse link
G Synj1 synaptojanin 1 part_of ISO PMID:9428629 ParkinsonsUK-UCL PMID:9428629 RGD:11059574 NCBI chrNW_004936500:9,484,571...9,565,980
Ensembl chrNW_004936500:9,484,586...9,566,100 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18223
    cellular anatomical structure 18002
      membrane 8261
        clathrin-coated pit 72
          clathrin coat of coated pit + 18
paths to the root