ONTOLOGY REPORT - ANNOTATIONS
Term: clathrin-coated pit
Accession: GO:0005905
browse the term
Definition: A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
Synonyms: exact_synonym: coated pit
xref: NIF_Subcellular:sao1969557946
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Aak1
AP2 associated kinase 1
located_in
ISS
UniProt
GO_REF:0000024
NCBI chr 6:86,826,252...86,980,209
Ensembl chr 6:86,826,499...86,980,205
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Ackr3
atypical chemokine receptor 3
located_in
ISS ISO
UniProt GO_Central
GO_REF:0000024 GO_REF:0000119
NCBI chr 1:90,131,702...90,143,446
Ensembl chr 1:90,131,702...90,144,473
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Adcy8
adenylate cyclase 8
located_in
ISO ISS
GO_Central UniProt
GO_REF:0000024 GO_REF:0000096
NCBI chr15:64,570,884...64,794,145
Ensembl chr15:64,568,933...64,794,145
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Amn
amnionless
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr12:111,237,530...111,242,860
Ensembl chr12:111,237,529...111,242,860
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Ap1g1
adaptor protein complex AP-1, gamma 1 subunit
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 8:110,505,215...110,590,842
Ensembl chr 8:110,505,186...110,590,836
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Ap1s1
adaptor protein complex AP-1, sigma 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 5:137,063,852...137,074,917
Ensembl chr 5:137,063,847...137,074,989
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Ap1s2
adaptor-related protein complex 1, sigma 2 subunit
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr X:162,691,427...162,716,662
Ensembl chr X:162,692,013...162,716,662
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Ap1s3
adaptor-related protein complex AP-1, sigma 3
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 1:79,584,593...79,649,736
Ensembl chr 1:79,584,593...79,649,689
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Ap2m1
adaptor-related protein complex 2, mu 1 subunit
located_in
ISO
GO_Central
GO_REF:0000119
NCBI chr16:20,354,230...20,363,659
Ensembl chr16:20,354,228...20,363,659
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App
amyloid beta precursor protein
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr16:84,751,236...84,972,187
Ensembl chr16:84,746,573...84,970,654
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Arrb1
arrestin, beta 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 7:99,184,356...99,255,979
Ensembl chr 7:99,184,673...99,255,978
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Arrb2
arrestin, beta 2
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr11:70,323,051...70,331,654
Ensembl chr11:70,323,461...70,331,654
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Atat1
alpha tubulin acetyltransferase 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr17:36,208,487...36,220,971
Ensembl chr17:36,208,487...36,220,967
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Bcl2l1
BCL2-like 1
located_in
ISO
GO_Central
GO_REF:0000096
NCBI chr 2:152,600,652...152,673,632
Ensembl chr 2:152,622,588...152,673,648
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Bmpr2
bone morphogenetic protein receptor type 2
is_active_in
IDA
(PMID:16923969)
MGI
PMID:16923969
NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173
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Ccdc32
coiled-coil domain containing 32
part_of located_in
ISO ISS
(PMID:33859415)
UniProt GO_Central UniProt
PMID:33859415
GO_REF:0000024 GO_REF:0000119
NCBI chr 2:118,848,260...118,859,887
Ensembl chr 2:118,848,260...118,859,874
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Cdhr5
cadherin-related family member 5
located_in
ISO
RGD GO_Central
PMID:10801787
GO_REF:0000096 RGD:633361
NCBI chr 7:140,848,993...140,856,708
Ensembl chr 7:140,848,996...140,856,699
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Cemip
cell migration inducing protein, hyaluronan binding
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 7:83,582,065...83,735,893
Ensembl chr 7:83,582,065...83,735,710
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Clta
clathrin light chain A
located_in
ISO
RGD GO_Central
PMID:14985443
GO_REF:0000096 RGD:2301373
NCBI chr 4:44,003,816...44,032,846
Ensembl chr 4:44,004,452...44,032,846
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Cltc
clathrin heavy chain
located_in
IDA
(PMID:26437238)
MGI
PMID:26437238
NCBI chr11:86,585,178...86,648,637
Ensembl chr11:86,585,177...86,648,391
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Cttn
cortactin
located_in
ISO ISS
GO_Central UniProt
GO_REF:0000024 GO_REF:0000096
NCBI chr 7:143,989,468...144,024,743
Ensembl chr 7:143,989,470...144,024,746
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Cubn
cubilin
located_in
IDA ISO
(PMID:15616221)
MGI GO_Central
PMID:15616221
GO_REF:0000096
NCBI chr 2:13,281,149...13,496,687
Ensembl chr 2:13,281,149...13,496,624
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Dab2
disabled 2, mitogen-responsive phosphoprotein
located_in is_active_in
ISO IBA
GO_Central
GO_REF:0000033 GO_REF:0000119
NCBI chr15:6,329,269...6,470,196
Ensembl chr15:6,329,269...6,470,193
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Dgkd
diacylglycerol kinase, delta
located_in
ISO ISS
GO_Central UniProt
GO_REF:0000024 GO_REF:0000119
NCBI chr 1:87,780,942...87,872,900
Ensembl chr 1:87,781,009...87,872,902
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Dnm1
dynamin 1
located_in
ISS ISO
UniProt GO_Central
GO_REF:0000024 GO_REF:0000119
NCBI chr 2:32,198,483...32,243,361
Ensembl chr 2:32,198,483...32,243,350
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Dnm1l
dynamin 1-like
located_in
ISO IEA
GO_Central UniProt
GO_REF:0000044 GO_REF:0000096
NCBI chr16:16,130,092...16,176,863
Ensembl chr16:16,130,094...16,176,823
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Dnm2
dynamin 2
located_in
ISO ISS IDA
(PMID:26437238)
RGD UniProt GO_Central MGI
PMID:9725914 PMID:26437238
GO_REF:0000024 GO_REF:0000096 RGD:9685132
NCBI chr 9:21,336,167...21,419,055
Ensembl chr 9:21,336,204...21,419,055
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Epn1
epsin 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 7:5,083,207...5,101,178
Ensembl chr 7:5,083,234...5,101,177
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Epn3
epsin 3
located_in
IDA
(PMID:21115825)
MGI
PMID:21115825
NCBI chr11:94,380,425...94,390,800
Ensembl chr11:94,380,425...94,390,800
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Eps15
epidermal growth factor receptor pathway substrate 15
located_in
IDA
(PMID:20427320)
MGI
PMID:20427320
NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014
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Fcho1
FCH domain only 1
located_in is_active_in
ISO IBA
MGI GO_Central
GO_REF:0000008 GO_REF:0000033 GO_REF:0000119
NCBI chr 8:72,161,031...72,181,980
Ensembl chr 8:72,161,031...72,178,360
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Fcho2
FCH domain only 2
located_in is_active_in
IDA IBA ISO
(PMID:21762413) (PMID:20448150)
UniProt GO_Central MGI ParkinsonsUK-UCL
PMID:20448150 PMID:21762413
GO_REF:0000008 GO_REF:0000033 GO_REF:0000119
NCBI chr13:98,859,914...98,953,085
Ensembl chr13:98,859,911...98,951,957
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Fchsd2
FCH and double SH3 domains 2
located_in
ISO ISS
GO_Central UniProt
GO_REF:0000024 GO_REF:0000119
NCBI chr 7:100,757,836...100,933,613
Ensembl chr 7:100,742,070...100,933,612
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Fnbp1
formin binding protein 1
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 2:30,916,218...31,032,046
Ensembl chr 2:30,916,218...31,032,020
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Gas7
growth arrest specific 7
is_active_in
IBA
GO_Central
GO_REF:0000033
NCBI chr11:67,344,083...67,579,818
Ensembl chr11:67,345,917...67,575,800
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Hip1r
huntingtin interacting protein 1 related
located_in
IDA
(PMID:10613908), (PMID:11564758)
MGI
PMID:10613908 PMID:11564758
NCBI chr 5:124,111,665...124,141,263
Ensembl chr 5:124,111,691...124,143,621
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Hspd1
heat shock protein 1 (chaperonin)
located_in
IEA ISO
Ensembl GO_Central
GO_REF:0000107 GO_REF:0000119
NCBI chr 1:55,116,992...55,127,402
Ensembl chr 1:55,116,994...55,127,402
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Inpp5f
inositol polyphosphate-5-phosphatase F
located_in
IEA ISO
UniProt GO_Central
GO_REF:0000044 GO_REF:0000119
NCBI chr 7:128,212,905...128,298,161
Ensembl chr 7:128,213,052...128,298,149
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Itsn1
intersectin 1 (SH3 domain protein 1A)
located_in
ISO IDA
(PMID:26437238)
RGD GO_Central MGI
PMID:19258322 PMID:26437238
GO_REF:0000096 GO_REF:0000119 RGD:13461864
NCBI chr16:91,526,198...91,717,479
Ensembl chr16:91,526,169...91,717,485
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Ldlr
low density lipoprotein receptor
located_in
ISO IEA
GO_Central UniProt
GO_REF:0000044 GO_REF:0000119
NCBI chr 9:21,634,872...21,661,215
Ensembl chr 9:21,634,779...21,661,215
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Lrp1
low density lipoprotein receptor-related protein 1
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr10:127,374,026...127,457,158
Ensembl chr10:127,374,030...127,457,017
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Lrp10
low-density lipoprotein receptor-related protein 10
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr14:54,701,260...54,707,749
Ensembl chr14:54,701,594...54,708,954
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Lrp12
low density lipoprotein-related protein 12
located_in
IEA
UniProt
GO_REF:0000043
NCBI chr15:39,733,985...39,807,417
Ensembl chr15:39,733,985...39,807,390
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Lrp2
low density lipoprotein receptor-related protein 2
located_in
IDA
(PMID:15616221)
MGI
PMID:15616221
NCBI chr 2:69,254,679...69,416,373
Ensembl chr 2:69,254,684...69,416,409
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Myo6
myosin VI
NOT|located_in
ISO IEA
(PMID:12857860)
UniProt UniProt
PMID:12857860
GO_REF:0000044
NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011
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Necap1
NECAP endocytosis associated 1
located_in
IDA
(PMID:14555962)
UniProt
PMID:14555962
NCBI chr 6:122,851,516...122,865,902
Ensembl chr 6:122,851,433...122,865,900
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Numb
NUMB endocytic adaptor protein
located_in
IDA
(PMID:26437238)
MGI
PMID:26437238
NCBI chr12:83,840,808...83,968,708
Ensembl chr12:83,840,808...83,968,708
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Ocrl
OCRL, inositol polyphosphate-5-phosphatase
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr X:47,001,289...47,055,305
Ensembl chr X:47,001,264...47,054,745
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Picalm
phosphatidylinositol binding clathrin assembly protein
located_in is_active_in
ISO IBA IDA ISS
(PMID:12832620)
GO_Central UniProt
PMID:12832620
GO_REF:0000024 GO_REF:0000033 GO_REF:0000119
NCBI chr 7:89,778,711...89,858,655
Ensembl chr 7:89,779,421...89,862,673
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Rab35
RAB35, member RAS oncogene family
located_in
ISO IEA
GO_Central UniProt
GO_REF:0000044 GO_REF:0000119
NCBI chr 5:115,769,953...115,785,217
Ensembl chr 5:115,769,967...115,785,795
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Reps1
RalBP1 associated Eps domain containing protein
located_in
IEA ISO
UniProt GO_Central
GO_REF:0000044 GO_REF:0000119
NCBI chr10:17,931,301...18,000,892
Ensembl chr10:17,931,609...18,000,903
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Sele
selectin, endothelial cell
located_in
IEA ISO
Ensembl GO_Central
GO_REF:0000107 GO_REF:0000119
NCBI chr 1:163,867,200...163,886,056
Ensembl chr 1:163,875,773...163,885,246
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Sgip1
SH3-domain GRB2-like (endophilin) interacting protein 1
located_in
ISO
GO_Central
GO_REF:0000119
NCBI chr 4:102,616,351...102,834,623
Ensembl chr 4:102,598,494...102,830,825
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Sh3bp4
SH3-domain binding protein 4
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr 1:88,998,061...89,082,940
Ensembl chr 1:88,998,137...89,082,790
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Slc2a4
solute carrier family 2 (facilitated glucose transporter), member 4
located_in
ISO IEA
RGD GO_Central Ensembl
PMID:1881917
GO_REF:0000096 GO_REF:0000107 RGD:2306204
NCBI chr11:69,833,112...69,839,040
Ensembl chr11:69,833,365...69,839,014
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Snap91
synaptosomal-associated protein 91
is_active_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 9:86,647,976...86,762,766
Ensembl chr 9:86,647,976...86,762,707
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Snx9
sorting nexin 9
located_in
ISS ISO
UniProt GO_Central
GO_REF:0000024 GO_REF:0000119
NCBI chr17:5,891,599...5,982,231
Ensembl chr17:5,891,604...5,982,229
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Sort1
sortilin 1
located_in
IEA ISO
Ensembl GO_Central
GO_REF:0000107 GO_REF:0000119
NCBI chr 3:108,191,272...108,268,835
Ensembl chr 3:108,191,398...108,268,827
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Sphk1
sphingosine kinase 1
located_in
ISS ISO
UniProt GO_Central
GO_REF:0000024 GO_REF:0000119
NCBI chr11:116,421,662...116,427,502
Ensembl chr11:116,421,751...116,427,501
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Ston1
stonin 1
located_in
IDA
(PMID:26437238)
MGI
PMID:26437238
NCBI chr17:88,905,043...88,955,293
Ensembl chr17:88,905,112...88,970,014
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Tfap2a
transcription factor AP-2, alpha
located_in
IDA
(PMID:26437238)
MGI
PMID:26437238
NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
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Tfrc
transferrin receptor
located_in
IDA ISO
(PMID:18434600)
MGI GO_Central
PMID:18434600
GO_REF:0000119
NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612
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Tnk2
tyrosine kinase, non-receptor, 2
located_in
ISO IEA
GO_Central UniProt
GO_REF:0000044 GO_REF:0000119
NCBI chr16:32,462,699...32,502,311
Ensembl chr16:32,462,692...32,502,311
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Trf
transferrin
located_in
IDA ISO
(PMID:20427320)
MGI GO_Central
PMID:20427320
GO_REF:0000119
NCBI chr 9:103,086,075...103,107,485
Ensembl chr 9:103,081,200...103,107,643
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Vldlr
very low density lipoprotein receptor
located_in
IEA
UniProt
GO_REF:0000044
NCBI chr19:27,190,070...27,231,631
Ensembl chr19:27,193,884...27,231,631
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Ap2a1
adaptor-related protein complex 2, alpha 1 subunit
part_of
NAS IBA ISO IDA
(PMID:12086608) (PMID:23676497)
ComplexPortal GO_Central UniProt
PMID:12086608 PMID:23676497
GO_REF:0000033 GO_REF:0000119
NCBI chr 7:44,549,797...44,578,914
Ensembl chr 7:44,549,797...44,578,920
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Ap2a2
adaptor-related protein complex 2, alpha 2 subunit
part_of
IDA IBA NAS ISO
(PMID:23676497) (PMID:12086608)
UniProt GO_Central ComplexPortal
PMID:12086608 PMID:23676497
GO_REF:0000033 GO_REF:0000096 GO_REF:0000119
NCBI chr 7:141,142,093...141,212,924
Ensembl chr 7:141,142,086...141,212,924
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Ap2b1
adaptor-related protein complex 2, beta 1 subunit
part_of
ISO IDA NAS
(PMID:23676497) (PMID:12086608)
GO_Central UniProt ComplexPortal
PMID:12086608 PMID:23676497
GO_REF:0000119
NCBI chr11:83,189,545...83,295,861
Ensembl chr11:83,189,850...83,295,861
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Ap2m1
adaptor-related protein complex 2, mu 1 subunit
part_of
ISO IBA NAS IDA
(PMID:12086608) (PMID:23676497)
GO_Central ComplexPortal UniProt
PMID:12086608 PMID:23676497
GO_REF:0000033 GO_REF:0000096 GO_REF:0000119
NCBI chr16:20,354,230...20,363,659
Ensembl chr16:20,354,228...20,363,659
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Ap2s1
adaptor-related protein complex 2, sigma 1 subunit
part_of
ISO NAS IDA
(PMID:12086608)
RGD GO_Central ComplexPortal CAFA MGI
PMID:7593184 PMID:12086608
GO_REF:0000008 GO_REF:0000096 RGD:2306270
NCBI chr 7:16,472,369...16,483,215
Ensembl chr 7:16,472,335...16,483,219
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Btbd8
BTB domain containing 8
located_in part_of
ISO IEA
PMID:29262337
UniProt GO_Central Ensembl
PMID:29262337
GO_REF:0000096 GO_REF:0000107 RGD:13601995
NCBI chr 5:107,585,796...107,660,426
Ensembl chr 5:107,585,863...107,659,073
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Eps15
epidermal growth factor receptor pathway substrate 15
part_of
IDA
(PMID:17626015)
UniProt
PMID:17626015
NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014
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Sgip1
SH3-domain GRB2-like (endophilin) interacting protein 1
part_of
IDA
(PMID:17626015)
UniProt
PMID:17626015
NCBI chr 4:102,616,351...102,834,623
Ensembl chr 4:102,598,494...102,830,825
G
Slc18a3
solute carrier family 18 (vesicular monoamine), member 3
part_of
ISO IBA
RGD GO_Central
PMID:14724281
GO_REF:0000033 GO_REF:0000096 RGD:2317430
NCBI chr14:32,184,394...32,186,807
Ensembl chr14:32,184,395...32,186,807
G
Snap91
synaptosomal-associated protein 91
part_of
IC
(PMID:10428863)
BHF-UCL
PMID:10428863
NCBI chr 9:86,647,976...86,762,766
Ensembl chr 9:86,647,976...86,762,707
G
Ston1
stonin 1
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr17:88,905,043...88,955,293
Ensembl chr17:88,905,112...88,970,014
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Ston2
stonin 2
part_of
IBA
GO_Central
GO_REF:0000033
NCBI chr12:91,599,686...91,753,237
Ensembl chr12:91,641,586...91,652,887 Ensembl chr12:91,641,586...91,652,887
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Tbc1d5
TBC1 domain family, member 5
located_in part_of
ISO
(PMID:24603492)
UniProt GO_Central
PMID:24603492
GO_REF:0000119
NCBI chr17:51,040,155...51,488,228
Ensembl chr17:51,040,152...51,486,380
G
Clta
clathrin light chain A
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr 4:44,003,816...44,032,846
Ensembl chr 4:44,004,452...44,032,846
G
Cltb
clathrin light chain B
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr13:54,740,199...54,759,186
Ensembl chr13:54,740,214...54,759,157
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Cltc
clathrin heavy chain
part_of
IEA
InterPro
GO_REF:0000002
NCBI chr11:86,585,178...86,648,637
Ensembl chr11:86,585,177...86,648,391
G
Dab2
disabled 2, mitogen-responsive phosphoprotein
part_of
IDA
(PMID:11247302)
UniProt
PMID:11247302
NCBI chr15:6,329,269...6,470,196
Ensembl chr15:6,329,269...6,470,193
G
Eps15
epidermal growth factor receptor pathway substrate 15
part_of
IDA IBA
(PMID:18434600)
MGI GO_Central
PMID:18434600
GO_REF:0000033
NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014
G
Eps15l1
epidermal growth factor receptor pathway substrate 15-like 1
part_of
IDA IBA
(PMID:18434600)
MGI GO_Central
PMID:18434600
GO_REF:0000033
NCBI chr 8:73,094,834...73,175,410
Ensembl chr 8:73,094,839...73,175,304
G
Picalm
phosphatidylinositol binding clathrin assembly protein
part_of
ISO IEA
GO_Central Ensembl
GO_REF:0000107 GO_REF:0000119
NCBI chr 7:89,778,711...89,858,655
Ensembl chr 7:89,779,421...89,862,673
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Synj1
synaptojanin 1
part_of
ISO ISS
GO_Central BHF-UCL
GO_REF:0000024 GO_REF:0000096
NCBI chr16:90,732,980...90,810,543
Ensembl chr16:90,732,980...90,808,196
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