Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:clathrin-coated pit
go back to main search page
Accession:GO:0005905 term browser browse the term
Definition:A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
Synonyms:exact_synonym: coated pit
 xref: NIF_Subcellular:sao1969557946



show annotations for term's descendants           Sort by:
clathrin-coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aak1 AP2 associated kinase 1 located_in ISS UniProt GO_REF:0000024 NCBI chr 6:86,826,252...86,980,209
Ensembl chr 6:86,826,499...86,980,205
JBrowse link
G Ackr3 atypical chemokine receptor 3 located_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr 1:90,131,702...90,143,446
Ensembl chr 1:90,131,702...90,144,473
JBrowse link
G Adcy8 adenylate cyclase 8 located_in ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000096 NCBI chr15:64,570,884...64,794,145
Ensembl chr15:64,568,933...64,794,145
JBrowse link
G Amn amnionless located_in IEA UniProt GO_REF:0000043 NCBI chr12:111,237,530...111,242,860
Ensembl chr12:111,237,529...111,242,860
JBrowse link
G Ap1g1 adaptor protein complex AP-1, gamma 1 subunit located_in IEA UniProt GO_REF:0000044 NCBI chr 8:110,505,215...110,590,842
Ensembl chr 8:110,505,186...110,590,836
JBrowse link
G Ap1s1 adaptor protein complex AP-1, sigma 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 5:137,063,852...137,074,917
Ensembl chr 5:137,063,847...137,074,989
JBrowse link
G Ap1s2 adaptor-related protein complex 1, sigma 2 subunit located_in IEA UniProt GO_REF:0000044 NCBI chr  X:162,691,427...162,716,662
Ensembl chr  X:162,692,013...162,716,662
JBrowse link
G Ap1s3 adaptor-related protein complex AP-1, sigma 3 located_in IEA UniProt GO_REF:0000044 NCBI chr 1:79,584,593...79,649,736
Ensembl chr 1:79,584,593...79,649,689
JBrowse link
G Ap2m1 adaptor-related protein complex 2, mu 1 subunit located_in ISO GO_Central GO_REF:0000119 NCBI chr16:20,354,230...20,363,659
Ensembl chr16:20,354,228...20,363,659
JBrowse link
G App amyloid beta precursor protein located_in IEA UniProt GO_REF:0000044 NCBI chr16:84,751,236...84,972,187
Ensembl chr16:84,746,573...84,970,654
JBrowse link
G Arrb1 arrestin, beta 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 7:99,184,356...99,255,979
Ensembl chr 7:99,184,673...99,255,978
JBrowse link
G Arrb2 arrestin, beta 2 located_in IEA UniProt GO_REF:0000044 NCBI chr11:70,323,051...70,331,654
Ensembl chr11:70,323,461...70,331,654
JBrowse link
G Atat1 alpha tubulin acetyltransferase 1 located_in IEA UniProt GO_REF:0000044 NCBI chr17:36,208,487...36,220,971
Ensembl chr17:36,208,487...36,220,967
JBrowse link
G Bcl2l1 BCL2-like 1 located_in ISO GO_Central GO_REF:0000096 NCBI chr 2:152,600,652...152,673,632
Ensembl chr 2:152,622,588...152,673,648
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 is_active_in IDA (PMID:16923969) MGI PMID:16923969 NCBI chr 1:59,802,721...59,917,240
Ensembl chr 1:59,802,559...59,918,173
JBrowse link
G Ccdc32 coiled-coil domain containing 32 part_of
located_in
ISO
ISS
(PMID:33859415) UniProt
GO_Central
UniProt
PMID:33859415 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:118,848,260...118,859,887
Ensembl chr 2:118,848,260...118,859,874
JBrowse link
G Cdhr5 cadherin-related family member 5 located_in ISO RGD
GO_Central
PMID:10801787 GO_REF:0000096 RGD:633361 NCBI chr 7:140,848,993...140,856,708
Ensembl chr 7:140,848,996...140,856,699
JBrowse link
G Cemip cell migration inducing protein, hyaluronan binding located_in IEA UniProt GO_REF:0000044 NCBI chr 7:83,582,065...83,735,893
Ensembl chr 7:83,582,065...83,735,710
JBrowse link
G Clta clathrin light chain A located_in ISO RGD
GO_Central
PMID:14985443 GO_REF:0000096 RGD:2301373 NCBI chr 4:44,003,816...44,032,846
Ensembl chr 4:44,004,452...44,032,846
JBrowse link
G Cltc clathrin heavy chain located_in IDA (PMID:26437238) MGI PMID:26437238 NCBI chr11:86,585,178...86,648,637
Ensembl chr11:86,585,177...86,648,391
JBrowse link
G Cttn cortactin located_in ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000096 NCBI chr 7:143,989,468...144,024,743
Ensembl chr 7:143,989,470...144,024,746
JBrowse link
G Cubn cubilin located_in IDA
ISO
(PMID:15616221) MGI
GO_Central
PMID:15616221 GO_REF:0000096 NCBI chr 2:13,281,149...13,496,687
Ensembl chr 2:13,281,149...13,496,624
JBrowse link
G Dab2 disabled 2, mitogen-responsive phosphoprotein located_in
is_active_in
ISO
IBA
GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr15:6,329,269...6,470,196
Ensembl chr15:6,329,269...6,470,193
JBrowse link
G Dgkd diacylglycerol kinase, delta located_in ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000119 NCBI chr 1:87,780,942...87,872,900
Ensembl chr 1:87,781,009...87,872,902
JBrowse link
G Dnm1 dynamin 1 located_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr 2:32,198,483...32,243,361
Ensembl chr 2:32,198,483...32,243,350
JBrowse link
G Dnm1l dynamin 1-like located_in ISO
IEA
GO_Central
UniProt
GO_REF:0000044 GO_REF:0000096 NCBI chr16:16,130,092...16,176,863
Ensembl chr16:16,130,094...16,176,823
JBrowse link
G Dnm2 dynamin 2 located_in ISO
ISS
IDA
(PMID:26437238) RGD
UniProt
GO_Central
MGI
PMID:9725914 PMID:26437238 GO_REF:0000024 GO_REF:0000096 RGD:9685132 NCBI chr 9:21,336,167...21,419,055
Ensembl chr 9:21,336,204...21,419,055
JBrowse link
G Epn1 epsin 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 7:5,083,207...5,101,178
Ensembl chr 7:5,083,234...5,101,177
JBrowse link
G Epn3 epsin 3 located_in IDA (PMID:21115825) MGI PMID:21115825 NCBI chr11:94,380,425...94,390,800
Ensembl chr11:94,380,425...94,390,800
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 located_in IDA (PMID:20427320) MGI PMID:20427320 NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014
JBrowse link
G Fcho1 FCH domain only 1 located_in
is_active_in
ISO
IBA
MGI
GO_Central
GO_REF:0000008 GO_REF:0000033 GO_REF:0000119 NCBI chr 8:72,161,031...72,181,980
Ensembl chr 8:72,161,031...72,178,360
JBrowse link
G Fcho2 FCH domain only 2 located_in
is_active_in
IDA
IBA
ISO
(PMID:21762413)
(PMID:20448150)
UniProt
GO_Central
MGI
ParkinsonsUK-UCL
PMID:20448150 PMID:21762413 GO_REF:0000008 GO_REF:0000033 GO_REF:0000119 NCBI chr13:98,859,914...98,953,085
Ensembl chr13:98,859,911...98,951,957
JBrowse link
G Fchsd2 FCH and double SH3 domains 2 located_in ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000119 NCBI chr 7:100,757,836...100,933,613
Ensembl chr 7:100,742,070...100,933,612
JBrowse link
G Fnbp1 formin binding protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 2:30,916,218...31,032,046
Ensembl chr 2:30,916,218...31,032,020
JBrowse link
G Gas7 growth arrest specific 7 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:67,344,083...67,579,818
Ensembl chr11:67,345,917...67,575,800
JBrowse link
G Hip1r huntingtin interacting protein 1 related located_in IDA (PMID:10613908), (PMID:11564758) MGI PMID:10613908 PMID:11564758 NCBI chr 5:124,111,665...124,141,263
Ensembl chr 5:124,111,691...124,143,621
JBrowse link
G Hspd1 heat shock protein 1 (chaperonin) located_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 1:55,116,992...55,127,402
Ensembl chr 1:55,116,994...55,127,402
JBrowse link
G Inpp5f inositol polyphosphate-5-phosphatase F located_in IEA
ISO
UniProt
GO_Central
GO_REF:0000044 GO_REF:0000119 NCBI chr 7:128,212,905...128,298,161
Ensembl chr 7:128,213,052...128,298,149
JBrowse link
G Itsn1 intersectin 1 (SH3 domain protein 1A) located_in ISO
IDA
(PMID:26437238) RGD
GO_Central
MGI
PMID:19258322 PMID:26437238 GO_REF:0000096 GO_REF:0000119 RGD:13461864 NCBI chr16:91,526,198...91,717,479
Ensembl chr16:91,526,169...91,717,485
JBrowse link
G Ldlr low density lipoprotein receptor located_in ISO
IEA
GO_Central
UniProt
GO_REF:0000044 GO_REF:0000119 NCBI chr 9:21,634,872...21,661,215
Ensembl chr 9:21,634,779...21,661,215
JBrowse link
G Lrp1 low density lipoprotein receptor-related protein 1 located_in IEA UniProt GO_REF:0000043 NCBI chr10:127,374,026...127,457,158
Ensembl chr10:127,374,030...127,457,017
JBrowse link
G Lrp10 low-density lipoprotein receptor-related protein 10 located_in IEA UniProt GO_REF:0000043 NCBI chr14:54,701,260...54,707,749
Ensembl chr14:54,701,594...54,708,954
JBrowse link
G Lrp12 low density lipoprotein-related protein 12 located_in IEA UniProt GO_REF:0000043 NCBI chr15:39,733,985...39,807,417
Ensembl chr15:39,733,985...39,807,390
JBrowse link
G Lrp2 low density lipoprotein receptor-related protein 2 located_in IDA (PMID:15616221) MGI PMID:15616221 NCBI chr 2:69,254,679...69,416,373
Ensembl chr 2:69,254,684...69,416,409
JBrowse link
G Myo6 myosin VI NOT|located_in ISO
IEA
(PMID:12857860) UniProt
UniProt
PMID:12857860 GO_REF:0000044 NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011
JBrowse link
G Necap1 NECAP endocytosis associated 1 located_in IDA (PMID:14555962) UniProt PMID:14555962 NCBI chr 6:122,851,516...122,865,902
Ensembl chr 6:122,851,433...122,865,900
JBrowse link
G Numb NUMB endocytic adaptor protein located_in IDA (PMID:26437238) MGI PMID:26437238 NCBI chr12:83,840,808...83,968,708
Ensembl chr12:83,840,808...83,968,708
JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in IEA UniProt GO_REF:0000044 NCBI chr  X:47,001,289...47,055,305
Ensembl chr  X:47,001,264...47,054,745
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein located_in
is_active_in
ISO
IBA
IDA
ISS
(PMID:12832620) GO_Central
UniProt
PMID:12832620 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 7:89,778,711...89,858,655
Ensembl chr 7:89,779,421...89,862,673
JBrowse link
G Rab35 RAB35, member RAS oncogene family located_in ISO
IEA
GO_Central
UniProt
GO_REF:0000044 GO_REF:0000119 NCBI chr 5:115,769,953...115,785,217
Ensembl chr 5:115,769,967...115,785,795
JBrowse link
G Reps1 RalBP1 associated Eps domain containing protein located_in IEA
ISO
UniProt
GO_Central
GO_REF:0000044 GO_REF:0000119 NCBI chr10:17,931,301...18,000,892
Ensembl chr10:17,931,609...18,000,903
JBrowse link
G Sele selectin, endothelial cell located_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 1:163,867,200...163,886,056
Ensembl chr 1:163,875,773...163,885,246
JBrowse link
G Sgip1 SH3-domain GRB2-like (endophilin) interacting protein 1 located_in ISO GO_Central GO_REF:0000119 NCBI chr 4:102,616,351...102,834,623
Ensembl chr 4:102,598,494...102,830,825
JBrowse link
G Sh3bp4 SH3-domain binding protein 4 located_in IEA UniProt GO_REF:0000044 NCBI chr 1:88,998,061...89,082,940
Ensembl chr 1:88,998,137...89,082,790
JBrowse link
G Slc2a4 solute carrier family 2 (facilitated glucose transporter), member 4 located_in ISO
IEA
RGD
GO_Central
Ensembl
PMID:1881917 GO_REF:0000096 GO_REF:0000107 RGD:2306204 NCBI chr11:69,833,112...69,839,040
Ensembl chr11:69,833,365...69,839,014
JBrowse link
G Snap91 synaptosomal-associated protein 91 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 9:86,647,976...86,762,766
Ensembl chr 9:86,647,976...86,762,707
JBrowse link
G Snx9 sorting nexin 9 located_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr17:5,891,599...5,982,231
Ensembl chr17:5,891,604...5,982,229
JBrowse link
G Sort1 sortilin 1 located_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 3:108,191,272...108,268,835
Ensembl chr 3:108,191,398...108,268,827
JBrowse link
G Sphk1 sphingosine kinase 1 located_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr11:116,421,662...116,427,502
Ensembl chr11:116,421,751...116,427,501
JBrowse link
G Ston1 stonin 1 located_in IDA (PMID:26437238) MGI PMID:26437238 NCBI chr17:88,905,043...88,955,293
Ensembl chr17:88,905,112...88,970,014
JBrowse link
G Tfap2a transcription factor AP-2, alpha located_in IDA (PMID:26437238) MGI PMID:26437238 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
G Tfrc transferrin receptor located_in IDA
ISO
(PMID:18434600) MGI
GO_Central
PMID:18434600 GO_REF:0000119 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612
JBrowse link
G Tnk2 tyrosine kinase, non-receptor, 2 located_in ISO
IEA
GO_Central
UniProt
GO_REF:0000044 GO_REF:0000119 NCBI chr16:32,462,699...32,502,311
Ensembl chr16:32,462,692...32,502,311
JBrowse link
G Trf transferrin located_in IDA
ISO
(PMID:20427320) MGI
GO_Central
PMID:20427320 GO_REF:0000119 NCBI chr 9:103,086,075...103,107,485
Ensembl chr 9:103,081,200...103,107,643
JBrowse link
G Vldlr very low density lipoprotein receptor located_in IEA UniProt GO_REF:0000044 NCBI chr19:27,190,070...27,231,631
Ensembl chr19:27,193,884...27,231,631
JBrowse link
AP-2 adaptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap2a1 adaptor-related protein complex 2, alpha 1 subunit part_of NAS
IBA
ISO
IDA
(PMID:12086608)
(PMID:23676497)
ComplexPortal
GO_Central
UniProt
PMID:12086608 PMID:23676497 GO_REF:0000033 GO_REF:0000119 NCBI chr 7:44,549,797...44,578,914
Ensembl chr 7:44,549,797...44,578,920
JBrowse link
G Ap2a2 adaptor-related protein complex 2, alpha 2 subunit part_of IDA
IBA
NAS
ISO
(PMID:23676497)
(PMID:12086608)
UniProt
GO_Central
ComplexPortal
PMID:12086608 PMID:23676497 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 NCBI chr 7:141,142,093...141,212,924
Ensembl chr 7:141,142,086...141,212,924
JBrowse link
G Ap2b1 adaptor-related protein complex 2, beta 1 subunit part_of ISO
IDA
NAS
(PMID:23676497)
(PMID:12086608)
GO_Central
UniProt
ComplexPortal
PMID:12086608 PMID:23676497 GO_REF:0000119 NCBI chr11:83,189,545...83,295,861
Ensembl chr11:83,189,850...83,295,861
JBrowse link
G Ap2m1 adaptor-related protein complex 2, mu 1 subunit part_of ISO
IBA
NAS
IDA
(PMID:12086608)
(PMID:23676497)
GO_Central
ComplexPortal
UniProt
PMID:12086608 PMID:23676497 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 NCBI chr16:20,354,230...20,363,659
Ensembl chr16:20,354,228...20,363,659
JBrowse link
G Ap2s1 adaptor-related protein complex 2, sigma 1 subunit part_of ISO
NAS
IDA
(PMID:12086608) RGD
GO_Central
ComplexPortal
CAFA
MGI
PMID:7593184 PMID:12086608 GO_REF:0000008 GO_REF:0000096 RGD:2306270 NCBI chr 7:16,472,369...16,483,215
Ensembl chr 7:16,472,335...16,483,219
JBrowse link
G Btbd8 BTB domain containing 8 located_in
part_of
ISO
IEA
PMID:29262337 UniProt
GO_Central
Ensembl
PMID:29262337 GO_REF:0000096 GO_REF:0000107 RGD:13601995 NCBI chr 5:107,585,796...107,660,426
Ensembl chr 5:107,585,863...107,659,073
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of IDA (PMID:17626015) UniProt PMID:17626015 NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014
JBrowse link
G Sgip1 SH3-domain GRB2-like (endophilin) interacting protein 1 part_of IDA (PMID:17626015) UniProt PMID:17626015 NCBI chr 4:102,616,351...102,834,623
Ensembl chr 4:102,598,494...102,830,825
JBrowse link
G Slc18a3 solute carrier family 18 (vesicular monoamine), member 3 part_of ISO
IBA
RGD
GO_Central
PMID:14724281 GO_REF:0000033 GO_REF:0000096 RGD:2317430 NCBI chr14:32,184,394...32,186,807
Ensembl chr14:32,184,395...32,186,807
JBrowse link
G Snap91 synaptosomal-associated protein 91 part_of IC (PMID:10428863) BHF-UCL PMID:10428863 NCBI chr 9:86,647,976...86,762,766
Ensembl chr 9:86,647,976...86,762,707
JBrowse link
G Ston1 stonin 1 part_of IBA GO_Central GO_REF:0000033 NCBI chr17:88,905,043...88,955,293
Ensembl chr17:88,905,112...88,970,014
JBrowse link
G Ston2 stonin 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr12:91,599,686...91,753,237
Ensembl chr12:91,641,586...91,652,887
Ensembl chr12:91,641,586...91,652,887
JBrowse link
G Tbc1d5 TBC1 domain family, member 5 located_in
part_of
ISO (PMID:24603492) UniProt
GO_Central
PMID:24603492 GO_REF:0000119 NCBI chr17:51,040,155...51,488,228
Ensembl chr17:51,040,152...51,486,380
JBrowse link
clathrin coat of coated pit term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clta clathrin light chain A part_of IEA InterPro GO_REF:0000002 NCBI chr 4:44,003,816...44,032,846
Ensembl chr 4:44,004,452...44,032,846
JBrowse link
G Cltb clathrin light chain B part_of IEA InterPro GO_REF:0000002 NCBI chr13:54,740,199...54,759,186
Ensembl chr13:54,740,214...54,759,157
JBrowse link
G Cltc clathrin heavy chain part_of IEA InterPro GO_REF:0000002 NCBI chr11:86,585,178...86,648,637
Ensembl chr11:86,585,177...86,648,391
JBrowse link
G Dab2 disabled 2, mitogen-responsive phosphoprotein part_of IDA (PMID:11247302) UniProt PMID:11247302 NCBI chr15:6,329,269...6,470,196
Ensembl chr15:6,329,269...6,470,193
JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 part_of IDA
IBA
(PMID:18434600) MGI
GO_Central
PMID:18434600 GO_REF:0000033 NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014
JBrowse link
G Eps15l1 epidermal growth factor receptor pathway substrate 15-like 1 part_of IDA
IBA
(PMID:18434600) MGI
GO_Central
PMID:18434600 GO_REF:0000033 NCBI chr 8:73,094,834...73,175,410
Ensembl chr 8:73,094,839...73,175,304
JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein part_of ISO
IEA
GO_Central
Ensembl
GO_REF:0000107 GO_REF:0000119 NCBI chr 7:89,778,711...89,858,655
Ensembl chr 7:89,779,421...89,862,673
JBrowse link
G Synj1 synaptojanin 1 part_of ISO
ISS
GO_Central
BHF-UCL
GO_REF:0000024 GO_REF:0000096 NCBI chr16:90,732,980...90,810,543
Ensembl chr16:90,732,980...90,808,196
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28568
    cellular anatomical structure 19603
      membrane 9894
        clathrin-coated pit 76
          clathrin coat of coated pit + 20
paths to the root