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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA cleavage factor complex
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Accession:GO:0005849 term browser browse the term
Definition:Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.



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mRNA cleavage factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 part_of ISO (PMID:20695905), (PMID:21295486), (PMID:29276085), (PMID:9659921) RGD PMID:9659921 PMID:20695905 PMID:21295486 PMID:29276085 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 part_of ISO
ISS
(PMID:20695905), (PMID:29276085)
GO_REF:0000024
RGD
UniProt
PMID:20695905 PMID:29276085 GO_REF:0000024 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Nudt21 nudix hydrolase 21 part_of ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:20695905), (PMID:21295486), (PMID:29276085)
GO_REF:0000002
GO_REF:0000104
GO_REF:0000033
UniProt
RGD
InterPro
GO_Central
PMID:20695905 PMID:21295486 PMID:29276085 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
JBrowse link
mRNA cleavage and polyadenylation specificity factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf1 cleavage and polyadenylation specific factor 1 part_of ISO
IBA
(PMID:21102410), (PMID:7590244)
GO_REF:0000033
RGD
GO_Central
PMID:7590244 PMID:21102410 GO_REF:0000033 NCBI chr 7:108,319,429...108,330,018
Ensembl chr 7:108,319,434...108,329,934
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 part_of ISO
IBA
(PMID:18305108), (PMID:21102410)
(PMID:16115198)
GO_REF:0000033
RGD
GO_Central
PMID:16115198 PMID:18305108 PMID:21102410 GO_REF:0000033 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 part_of ISO
IBA
(PMID:18305108), (PMID:21102410), (PMID:8929409)
(PMID:16115198)
GO_REF:0000033
RGD
GO_Central
PMID:8929409 PMID:16115198 PMID:18305108 PMID:21102410 GO_REF:0000033 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 part_of ISO
ISS
IEA
IBA
(PMID:21102410)
GO_REF:0000024
GO_REF:0000104
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:21102410 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586
JBrowse link
G Cpsf4-ps1 cleavage and polyadenylation specific factor 4, pseudogene 1 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:15,862,098...15,862,850
Ensembl chr  X:15,861,367...15,863,381
JBrowse link
G Cpsf4l cleavage and polyadenylation specific factor 4-like part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:98,741,816...98,756,069
Ensembl chr10:98,743,649...98,751,590
JBrowse link
G Cpsf4l2 cleavage and polyadenylation specific factor 4 like 2 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr12:10,211,744...10,213,512
Ensembl chr12:10,211,798...10,212,670
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 part_of ISO
IBA
(PMID:23187700)
GO_REF:0000033
RGD
GO_Central
PMID:23187700 GO_REF:0000033 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 part_of ISO
IBA
IEA
(PMID:23187700)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:23187700 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Csnk1a1 casein kinase 1, alpha 1 part_of
located_in
IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18305108)
Ensembl
UniProt
RGD
PMID:18305108 GO_REF:0000024 GO_REF:0000107 NCBI chr18:55,017,049...55,050,184
Ensembl chr18:55,017,055...55,049,271
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 part_of ISO
IBA
(PMID:18305108), (PMID:21102410)
GO_REF:0000033
RGD
GO_Central
PMID:18305108 PMID:21102410 GO_REF:0000033 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476
JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 part_of IEA
ISO
IBA
GO_REF:0000107
(PMID:19224921)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:19224921 GO_REF:0000033 GO_REF:0000107 NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708
JBrowse link
G Nudt21 nudix hydrolase 21 part_of ISO (PMID:23187700) RGD PMID:23187700 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Pip5k1a phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha part_of
located_in
IEA
ISO
GO_REF:0000107
(PMID:18305108)
Ensembl
RGD
PMID:18305108 GO_REF:0000107 NCBI chr 2:182,628,299...182,671,584
Ensembl chr 2:182,628,300...182,671,598
JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
JBrowse link
G Sympk symplekin scaffold protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:78,672,372...78,700,684
Ensembl chr 1:78,672,378...78,700,684
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific part_of
located_in
ISS
ISO
GO_REF:0000024
(PMID:18305108)
(PMID:21102410)
UniProt
RGD
PMID:18305108 PMID:21102410 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764
JBrowse link
G Wdr33 WD repeat domain 33 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597
JBrowse link
G Zc3h3 zinc finger CCCH type containing 3 part_of ISO (PMID:16115198) RGD PMID:16115198 NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451
JBrowse link
mRNA cleavage stimulating factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cstf1 cleavage stimulation factor subunit 1 part_of IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 3:161,144,522...161,156,294
Ensembl chr 3:161,144,548...161,156,300
JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 part_of ISO (PMID:7984242) RGD PMID:7984242 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20824
    protein-containing complex 6552
      nuclear protein-containing complex 1279
        mRNA cleavage factor complex 25
          mRNA cleavage and polyadenylation specificity factor complex 20
          mRNA cleavage stimulating factor complex 2
Path 2
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      organelle 13967
        membrane-bounded organelle 12555
          intracellular membrane-bounded organelle 12003
            nucleus 7451
              nuclear protein-containing complex 1279
                mRNA cleavage factor complex 25
                  mRNA cleavage and polyadenylation specificity factor complex 20
                  mRNA cleavage stimulating factor complex 2
paths to the root