ONTOLOGY REPORT - ANNOTATIONS |
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Term: | mRNA cleavage factor complex |
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Accession: | GO:0005849
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browse the term
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Definition: | Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules. |
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Clp1 |
cleavage factor polyribonucleotide kinase subunit 1 |
part_of |
IEA |
GO_REF:0000104 |
UniProt |
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GO_REF:0000104 |
NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
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Cpsf6 |
cleavage and polyadenylation specific factor 6 |
part_of |
ISO |
(PMID:20695905), (PMID:21295486), (PMID:29276085), (PMID:9659921) |
RGD |
PMID:9659921 PMID:20695905 PMID:21295486 PMID:29276085 |
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NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
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Cpsf7 |
cleavage and polyadenylation specific factor 7 |
part_of |
ISO ISS |
(PMID:20695905), (PMID:29276085) GO_REF:0000024 |
RGD UniProt |
PMID:20695905 PMID:29276085 |
GO_REF:0000024 |
NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905
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Nudt21 |
nudix hydrolase 21 |
part_of |
ISS ISO IEA IBA |
GO_REF:0000024 (PMID:20695905), (PMID:21295486), (PMID:29276085) GO_REF:0000002 GO_REF:0000104 GO_REF:0000033 |
UniProt RGD InterPro GO_Central |
PMID:20695905 PMID:21295486 PMID:29276085 |
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 |
NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
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Pcf11 |
PCF11 cleavage and polyadenylation factor subunit |
part_of |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
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Scaf8 |
SR-related CTD-associated factor 8 |
part_of |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977
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Cpsf1 |
cleavage and polyadenylation specific factor 1 |
part_of |
ISO IBA |
(PMID:21102410), (PMID:7590244) GO_REF:0000033 |
RGD GO_Central |
PMID:7590244 PMID:21102410 |
GO_REF:0000033 |
NCBI chr 7:108,319,429...108,330,018
Ensembl chr 7:108,319,434...108,329,934
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Cpsf2 |
cleavage and polyadenylation specific factor 2 |
part_of |
ISO IBA |
(PMID:18305108), (PMID:21102410) (PMID:16115198) GO_REF:0000033 |
RGD GO_Central |
PMID:16115198 PMID:18305108 PMID:21102410 |
GO_REF:0000033 |
NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
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Cpsf3 |
cleavage and polyadenylation specific factor 3 |
part_of |
ISO IBA |
(PMID:18305108), (PMID:21102410), (PMID:8929409) (PMID:16115198) GO_REF:0000033 |
RGD GO_Central |
PMID:8929409 PMID:16115198 PMID:18305108 PMID:21102410 |
GO_REF:0000033 |
NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
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Cpsf4 |
cleavage and polyadenylation specific factor 4 |
part_of |
ISO ISS IEA IBA |
(PMID:21102410) GO_REF:0000024 GO_REF:0000104 GO_REF:0000033 |
RGD UniProt GO_Central |
PMID:21102410 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 |
NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586
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Cpsf4-ps1 |
cleavage and polyadenylation specific factor 4, pseudogene 1 |
part_of |
IEA |
GO_REF:0000104 |
UniProt |
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GO_REF:0000104 |
NCBI chr X:15,862,098...15,862,850
Ensembl chr X:15,861,367...15,863,381
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Cpsf4l |
cleavage and polyadenylation specific factor 4-like |
part_of |
IEA |
GO_REF:0000104 |
UniProt |
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GO_REF:0000104 |
NCBI chr10:98,741,816...98,756,069
Ensembl chr10:98,743,649...98,751,590
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Cpsf4l2 |
cleavage and polyadenylation specific factor 4 like 2 |
part_of |
IEA |
GO_REF:0000104 |
UniProt |
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GO_REF:0000104 |
NCBI chr12:10,211,744...10,213,512
Ensembl chr12:10,211,798...10,212,670
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Cpsf6 |
cleavage and polyadenylation specific factor 6 |
part_of |
ISO IBA |
(PMID:23187700) GO_REF:0000033 |
RGD GO_Central |
PMID:23187700 |
GO_REF:0000033 |
NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
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Cpsf7 |
cleavage and polyadenylation specific factor 7 |
part_of |
ISO IBA IEA |
(PMID:23187700) GO_REF:0000033 GO_REF:0000107 |
RGD GO_Central Ensembl |
PMID:23187700 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905
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Csnk1a1 |
casein kinase 1, alpha 1 |
part_of located_in |
IEA ISS ISO |
GO_REF:0000107 GO_REF:0000024 (PMID:18305108) |
Ensembl UniProt RGD |
PMID:18305108 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr18:55,017,049...55,050,184
Ensembl chr18:55,017,055...55,049,271
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Cstf2 |
cleavage stimulation factor subunit 2 |
part_of |
ISO IBA |
(PMID:18305108), (PMID:21102410) GO_REF:0000033 |
RGD GO_Central |
PMID:18305108 PMID:21102410 |
GO_REF:0000033 |
NCBI chr X:97,253,559...97,279,476
Ensembl chr X:97,253,586...97,279,476
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Cstf2t |
cleavage stimulation factor subunit 2, tau variant |
part_of |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873
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Fip1l1 |
factor interacting with PAPOLA and CPSF1 |
part_of |
IEA ISO IBA |
GO_REF:0000107 (PMID:19224921) GO_REF:0000033 |
Ensembl RGD GO_Central |
PMID:19224921 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708
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Nudt21 |
nudix hydrolase 21 |
part_of |
ISO |
(PMID:23187700) |
RGD |
PMID:23187700 |
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NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
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Pip5k1a |
phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha |
part_of located_in |
IEA ISO |
GO_REF:0000107 (PMID:18305108) |
Ensembl RGD |
PMID:18305108 |
GO_REF:0000107 |
NCBI chr 2:182,628,299...182,671,584
Ensembl chr 2:182,628,300...182,671,598
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Ssu72 |
SSU72 homolog, RNA polymerase II CTD phosphatase |
part_of |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 5:166,312,267...166,343,432
Ensembl chr 5:166,313,650...166,343,429
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Sympk |
symplekin scaffold protein |
part_of |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 1:78,672,372...78,700,684
Ensembl chr 1:78,672,378...78,700,684
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Tut1 |
terminal uridylyl transferase 1, U6 snRNA-specific |
part_of located_in |
ISS ISO |
GO_REF:0000024 (PMID:18305108) (PMID:21102410) |
UniProt RGD |
PMID:18305108 PMID:21102410 |
GO_REF:0000024 |
NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764
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Wdr33 |
WD repeat domain 33 |
part_of |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr18:23,432,233...23,535,460
Ensembl chr18:23,432,191...23,468,597
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Zc3h3 |
zinc finger CCCH type containing 3 |
part_of |
ISO |
(PMID:16115198) |
RGD |
PMID:16115198 |
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NCBI chr 7:107,440,694...107,525,451
Ensembl chr 7:107,440,694...107,525,451
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Cstf1 |
cleavage stimulation factor subunit 1 |
part_of |
IEA IBA |
GO_REF:0000002 GO_REF:0000033 |
InterPro GO_Central |
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GO_REF:0000002 GO_REF:0000033 |
NCBI chr 3:161,144,522...161,156,294
Ensembl chr 3:161,144,548...161,156,300
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Cstf3 |
cleavage stimulation factor subunit 3 |
part_of |
ISO |
(PMID:7984242) |
RGD |
PMID:7984242 |
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NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196
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Term paths to the root
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