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ONTOLOGY REPORT - ANNOTATIONS

Term:endoplasmic reticulum-Golgi intermediate compartment
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Accession:GO:0005793 term browser browse the term
Definition:A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
Synonyms:exact_synonym: EGTC;   ER-Golgi intermediate compartment;   ER-Golgi transport container;   ERGIC;   VTC;   endoplasmic reticulum-Golgi transport container;   pre-Golgi intermediate compartment;   vesicular-tubular cluster
 xref: Wikipedia:Vesicular-tubular_cluster
 only_in_taxon: NCBITaxon:2759 ! Eukaryota


show annotations for term's descendants           Sort by:
endoplasmic reticulum-Golgi intermediate compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANPEP alanyl aminopeptidase, membrane located_in IEA Ensembl GO_REF:0000107 NCBI chr15:68,479,349...68,509,238
Ensembl chr15:87,681,826...87,703,713 		JBrowse link
G CA4 carbonic anhydrase 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,236,114...54,258,638 JBrowse link
G CLN8 CLN8 transmembrane ER and ERGIC protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:5,587,875...5,606,883
Ensembl chr 8:1,658,694...1,700,754 		JBrowse link
G CNIH4 cornichon family member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:199,825,889...199,848,664
Ensembl chr 1:204,834,031...204,855,747 		JBrowse link
G COPG1 COPI coat complex subunit gamma 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:126,310,558...126,338,726
Ensembl chr 3:133,664,856...133,694,849 		JBrowse link
G COPG2 COPI coat complex subunit gamma 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:122,470,494...122,633,223
Ensembl chr 7:134,988,505...135,149,512 		JBrowse link
G DICER1 dicer 1, ribonuclease III ISO RGD PMID:17888888 RGD:2311247 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940 		JBrowse link
G ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:168,187,760...168,305,675
Ensembl chr 5:175,098,246...175,215,920 		JBrowse link
G ERGIC2 ERGIC and golgi 2 located_in ISO (PMID:15308636) HGNC-UCL PMID:15308636 NCBI chr12:56,929,620...56,970,804
Ensembl chr12:59,553,049...59,595,953 		JBrowse link
G ERP44 endoplasmic reticulum protein 44 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:71,062,078...71,185,195
Ensembl chr 9:99,182,352...99,301,938 		JBrowse link
G FN1 fibronectin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003 		JBrowse link
G FTCD formimidoyltransferase cyclodeaminase located_in ISO PMID:9837973 BHF-UCL PMID:9837973 RGD:70743 NCBI chr21:32,481,042...32,501,932
Ensembl chr21:45,734,825...45,753,400 		JBrowse link
G GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:98,849,000...98,986,443
Ensembl chr10:102,316,329...102,452,439 		JBrowse link
G GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:33,371,603...33,388,098
Ensembl chr14:51,655,182...51,671,619 		JBrowse link
G GOLGA3 golgin A3 located_in ISO (PMID:12036294) MGI PMID:12036294 NCBI chr12:130,134,892...130,189,944
Ensembl chr12:134,852,158...134,910,366 		JBrowse link
G GOLGB1 golgin B1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:118,765,467...118,852,005
Ensembl chr 3:125,673,966...125,760,584 		JBrowse link
G HMGB1 high mobility group box 1 located_in IEA UniProt GO_REF:0000044 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:96,351,645...96,356,761
Ensembl chr 9:124,865,211...124,870,458 		JBrowse link
G IST1 IST1 factor associated with ESCRT-III located_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,082,530...53,115,965
Ensembl chr16:71,733,302...71,765,969 		JBrowse link
G KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 located_in ISO (PMID:15308636) UniProt PMID:15308636 NCBI chr19:45,382,456...45,391,338
Ensembl chr19:53,975,895...53,984,914 		JBrowse link
G LMAN1 lectin, mannose binding 1 located_in ISO
IEA 		RGD
TreeGrafter
Ensembl		 PMID:16257008 GO_REF:0000107 GO_REF:0000118 RGD:1600099 NCBI chr18:52,722,735...52,754,013
Ensembl chr18:56,049,292...56,080,533 		JBrowse link
G LMAN1L lectin, mannose binding 1 like located_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:53,754,682...53,768,324
Ensembl chr15:73,373,160...73,386,050 		JBrowse link
G LMAN2 lectin, mannose binding 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:172,619,011...172,653,303
Ensembl chr 5:179,696,018...179,716,076 		JBrowse link
G LMAN2L lectin, mannose binding 2 like located_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:102,573,894...102,608,066
Ensembl chr2A:97,628,021...97,661,745 		JBrowse link
G LOC100967741 transmembrane emp24 domain-containing protein 2-like located_in IEA UniProt GO_REF:0000117 NCBI chr 6:144,602,063...144,602,897 JBrowse link
G LOC100971190 putative N-acetyltransferase 8B located_in ISO (PMID:24556617) UniProt PMID:24556617 NCBI chr2A:73,761,907...73,763,964
Ensembl chr2A:75,297,531...75,298,213 		JBrowse link
G LOC117981552 transmembrane emp24 domain-containing protein 10-like located_in IEA UniProt GO_REF:0000117 NCBI chr 8:141,794,799...141,795,722 JBrowse link
G LRPAP1 LDL receptor related protein associated protein 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:3,663,649...3,683,450
Ensembl chr 4:3,646,179...3,666,098 		JBrowse link
G MAN1A1 mannosidase alpha class 1A member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:116,984,842...117,157,623
Ensembl chr 6:121,127,656...121,298,196 		JBrowse link
G MGAT4A alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A located_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:100,573,320...100,692,840
Ensembl chr2A:99,533,831...99,641,579 		JBrowse link
G MGAT4B alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:174,951,892...174,961,201
Ensembl chr 5:182,262,583...182,267,676 		JBrowse link
G MGAT4D MGAT4 family member D located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:132,804,533...132,861,460
Ensembl chr 4:144,112,540...144,170,880 		JBrowse link
G MPPE1 metallophosphoesterase 1 located_in IEA InterPro GO_REF:0000002 NCBI chr18:2,397,423...2,423,209
Ensembl chr18:4,662,348...4,686,262 		JBrowse link
G NAT8 N-acetyltransferase 8 (putative) located_in IEA Ensembl GO_REF:0000107 NCBI chr2A:73,702,173...73,703,763
Ensembl chr2A:75,189,726...75,190,409 		JBrowse link
G NUCB1 nucleobindin 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:45,900,098...45,923,056
Ensembl chr19:54,832,426...54,855,962 		JBrowse link
G NUCB2 nucleobindin 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:17,331,742...17,404,682
Ensembl chr11:17,036,038...17,072,447 		JBrowse link
G P4HB prolyl 4-hydroxylase subunit beta located_in IEA Ensembl GO_REF:0000107 NCBI chr17:76,248,252...76,266,152
Ensembl chr17:81,950,422...81,968,109 		JBrowse link
G PDIA6 protein disulfide isomerase family A member 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr2A:10,781,671...10,809,235
Ensembl chr2A:10,934,756...10,986,200 		JBrowse link
G PROM1 prominin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454 		JBrowse link
G PTPN2 protein tyrosine phosphatase non-receptor type 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:1,440,837...1,538,501
Ensembl chr18:16,562,052...16,659,570 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family located_in ISO (PMID:21187406) MGI PMID:21187406 NCBI chr11:61,634,017...61,642,945
Ensembl chr11:64,959,957...64,968,843 		JBrowse link
G RAB37 RAB37, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chr17:68,614,362...68,693,196
Ensembl chr17:74,172,612...74,249,219 		JBrowse link
G RER1 retention in endoplasmic reticulum sorting receptor 1 located_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:2,257,091...2,271,311 JBrowse link
G RGMB repulsive guidance molecule BMP co-receptor b located_in ISO (PMID:14749425) MGI PMID:14749425 NCBI chr 5:94,080,200...94,107,441
Ensembl chr 5:99,639,527...99,661,904 		JBrowse link
G SCYL1 SCY1 like pseudokinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,884,136...60,897,790
Ensembl chr11:64,218,464...64,233,413 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein located_in ISO (PMID:15308636) UniProt PMID:15308636 NCBI chr 1:82,383,313...82,404,612 JBrowse link
G SERPINH1 serpin family H member 1 located_in ISO (PMID:15308636) UniProt PMID:15308636 NCBI chr11:70,621,893...70,632,570 JBrowse link
G SLC35C2 solute carrier family 35 member C2 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,686,735...42,701,321
Ensembl chr20:43,772,681...43,780,671 		JBrowse link
G SMO smoothened, frizzled class receptor located_in ISO (PMID:35353806) MGI PMID:35353806 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G STX17 syntaxin 17 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:70,989,913...71,058,374
Ensembl chr 9:99,107,243...99,168,801 		JBrowse link
G SURF4 surfeit 4 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:104,484,792...104,499,508
Ensembl chr 9:133,096,353...133,103,007 		JBrowse link
G TMED1 transmembrane p24 trafficking protein 1 located_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr19:10,386,041...10,389,905
Ensembl chr19:11,107,511...11,111,744 		JBrowse link
G TMED10 transmembrane p24 trafficking protein 10 located_in ISO
IEA 		RGD
UniProt
Ensembl		 PMID:9914165 GO_REF:0000107 GO_REF:0000117 RGD:2317252 NCBI chr14:55,683,121...55,728,365
Ensembl chr14:74,526,733...74,572,000 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 located_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794 		JBrowse link
G TMED3 transmembrane p24 trafficking protein 3 located_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr15:58,280,282...58,355,677
Ensembl chr15:77,237,664...77,313,574 		JBrowse link
G TMED4 transmembrane p24 trafficking protein 4 located_in IEA UniProt GO_REF:0000117 NCBI chr 7:45,289,666...45,297,030
Ensembl chr 7:45,361,693...45,366,395 		JBrowse link
G TMED5 transmembrane p24 trafficking protein 5 located_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:95,821,324...95,850,099
Ensembl chr 1:94,552,590...94,582,875 		JBrowse link
G TMED6 transmembrane p24 trafficking protein 6 located_in IEA UniProt GO_REF:0000117 NCBI chr16:49,717,583...49,726,836
Ensembl chr16:69,103,720...69,112,535 		JBrowse link
G TMED7 transmembrane p24 trafficking protein 7 located_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:110,970,162...110,983,414
Ensembl chr 5:116,766,470...116,779,513 		JBrowse link
G TMED9 transmembrane p24 trafficking protein 9 located_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:172,897,814...172,901,789
Ensembl chr 5:179,957,842...179,963,279 		JBrowse link
G TRAPPC12 trafficking protein particle complex subunit 12 located_in IEA Ensembl GO_REF:0000107 NCBI chr2A:3,388,191...3,490,496
Ensembl chr2A:3,311,765...3,411,768 		JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:72,601,649...72,675,784
Ensembl chr14:91,945,392...92,019,231 		JBrowse link
G UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 located_in ISO PMID:11535823 UniProt PMID:11535823 RGD:8553934 NCBI chr2B:32,071,319...32,178,207
Ensembl chr2B:128,761,281...128,864,923 		JBrowse link
G VMA22 vacuolar ATPase assembly factor VMA22 located_in ISO (PMID:26833332) UniProt PMID:26833332 NCBI chr2B:28,624,800...28,629,543 JBrowse link
G YIF1A Yip1 interacting factor homolog A, membrane trafficking protein located_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr11:61,650,020...61,656,674
Ensembl chr11:64,975,525...64,980,110 		JBrowse link
G YIF1B Yip1 interacting factor homolog B, membrane trafficking protein located_in IEA UniProt
Ensembl
TreeGrafter		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr19:35,396,685...35,407,665
Ensembl chr19:43,970,703...43,981,310 		JBrowse link
G YIPF7 Yip1 domain family member 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:38,951,616...39,007,954
Ensembl chr 4:44,801,465...44,830,661 		JBrowse link
endoplasmic reticulum-Golgi intermediate compartment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AZIN2 antizyme inhibitor 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:32,365,430...32,404,880
Ensembl chr 1:33,550,140...33,589,402 		JBrowse link
G ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 5:168,187,760...168,305,675
Ensembl chr 5:175,098,246...175,215,920 		JBrowse link
G ERGIC2 ERGIC and golgi 2 located_in IEA UniProt GO_REF:0000044 NCBI chr12:56,929,620...56,970,804
Ensembl chr12:59,553,049...59,595,953 		JBrowse link
G ERGIC3 ERGIC and golgi 3 located_in IEA UniProt GO_REF:0000044 NCBI chr20:31,867,571...31,883,181
Ensembl chr20:32,986,131...33,001,737 		JBrowse link
G LAMP5 lysosomal associated membrane protein family member 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:9,487,971...9,503,912
Ensembl chr20:9,489,849...9,506,137 		JBrowse link
G LOC100967741 transmembrane emp24 domain-containing protein 2-like located_in IEA UniProt GO_REF:0000044 NCBI chr 6:144,602,063...144,602,897 JBrowse link
G LOC100971190 putative N-acetyltransferase 8B located_in ISO (PMID:19011241) UniProt PMID:19011241 NCBI chr2A:73,761,907...73,763,964
Ensembl chr2A:75,297,531...75,298,213 		JBrowse link
G MPPE1 metallophosphoesterase 1 located_in IEA UniProt GO_REF:0000044 NCBI chr18:2,397,423...2,423,209
Ensembl chr18:4,662,348...4,686,262 		JBrowse link
G NAT8 N-acetyltransferase 8 (putative) located_in IEA Ensembl GO_REF:0000107 NCBI chr2A:73,702,173...73,703,763
Ensembl chr2A:75,189,726...75,190,409 		JBrowse link
G PLPP3 phospholipid phosphatase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:55,779,343...55,862,717
Ensembl chr 1:57,489,178...57,573,398 		JBrowse link
G SPPL3 signal peptide peptidase like 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:118,351,199...118,489,579
Ensembl chr12:121,723,881...121,773,429 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 located_in
is_active_in 		IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:134,845,689...134,852,938
Ensembl chr 5:140,967,399...140,973,846 		JBrowse link
G SURF4 surfeit 4 located_in IEA UniProt GO_REF:0000044 NCBI chr 9:104,484,792...104,499,508
Ensembl chr 9:133,096,353...133,103,007 		JBrowse link
G TM6SF2 transmembrane 6 superfamily member 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:18,703,075...18,712,056
Ensembl chr19:19,706,235...19,715,096 		JBrowse link
G TMED1 transmembrane p24 trafficking protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chr19:10,386,041...10,389,905
Ensembl chr19:11,107,511...11,111,744 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 located_in IEA UniProt GO_REF:0000044 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794 		JBrowse link
G TMED3 transmembrane p24 trafficking protein 3 located_in IEA UniProt GO_REF:0000044 NCBI chr15:58,280,282...58,355,677
Ensembl chr15:77,237,664...77,313,574 		JBrowse link
G TMED5 transmembrane p24 trafficking protein 5 located_in IEA UniProt GO_REF:0000044 NCBI chr 1:95,821,324...95,850,099
Ensembl chr 1:94,552,590...94,582,875 		JBrowse link
G TMED7 transmembrane p24 trafficking protein 7 located_in IEA UniProt GO_REF:0000044 NCBI chr 5:110,970,162...110,983,414
Ensembl chr 5:116,766,470...116,779,513 		JBrowse link
G VMA12 vacuolar ATPase assembly factor VMA12 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,412,229...28,416,840
Ensembl chr17:28,914,604...28,919,194 		JBrowse link
G VMA21 vacuolar ATPase assembly factor VMA21 located_in IEA UniProt GO_REF:0000044 NCBI chr  X:140,995,525...141,008,351 JBrowse link
G VPS13B vacuolar protein sorting 13 homolog B located_in ISO (PMID:21865173) UniProt PMID:21865173 NCBI chr 8:95,659,443...96,525,316
Ensembl chr 8:97,860,720...98,698,271 		JBrowse link
G WHAMM WASP homolog associated with actin, golgi membranes and microtubules located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:62,763,534...62,788,639
Ensembl chr15:80,706,760...80,730,006 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20330
    cellular anatomical structure 19896
      cytoplasm 11377
        endoplasmic reticulum-Golgi intermediate compartment 78
          TRAPPI protein complex 0
          endoplasmic reticulum-Golgi intermediate compartment membrane 23
Path 2
Term Annotations click to browse term
  cellular_component 20330
    cellular anatomical structure 19896
      organelle 14817
        membrane-bounded organelle 13344
          intracellular membrane-bounded organelle 12792
            endoplasmic reticulum-Golgi intermediate compartment 78
              TRAPPI protein complex 0
              endoplasmic reticulum-Golgi intermediate compartment membrane 23
paths to the root