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ONTOLOGY REPORT - ANNOTATIONS

Term:rough endoplasmic reticulum
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Accession:GO:0005791 term browser browse the term
Definition:The rough (or granular) endoplasmic reticulum (ER) has ribosomes adhering to the outer surface; the ribosomes are the site of translation of the mRNA for those proteins which are either to be retained within the cisternae (ER-resident proteins), the proteins of the lysosomes, or the proteins destined for export from the cell. Glycoproteins undergo their initial glycosylation within the cisternae.
Synonyms:exact_synonym: RER;   rough ER
 xref: NIF_Subcellular:sao1881364067;   Wikipedia:Endoplasmic_reticulum#Rough_endoplasmic_reticulum


show annotations for term's descendants           Sort by:
rough endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Car4 carbonic anhydrase 4 located_in ISO (PMID:17409381) RGD PMID:17409381 NCBI chr10:69,827,945...69,836,501
Ensembl chr10:69,827,945...69,836,501 		JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in ISO
IEA 		(PMID:25009997)
GO_REF:0000107 		RGD
Ensembl		 PMID:25009997 GO_REF:0000107 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881 		JBrowse link
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 located_in ISO (PMID:21841312) RGD PMID:21841312 NCBI chr17:34,718,701...35,271,276
Ensembl chr17:34,718,687...35,407,524 		JBrowse link
G Ckap4 cytoskeleton-associated protein 4 located_in
is_active_in 		ISO
IEA
IBA 		(PMID:24454821)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:24454821 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:19,230,814...19,238,914
Ensembl chr 7:19,230,203...19,238,914 		JBrowse link
G ENSRNOG00000063223 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr  X:98,201,644...98,214,023 JBrowse link
G ENSRNOG00000063891 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 1:187,940,300...187,941,653 JBrowse link
G ENSRNOG00000069799 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr14:80,564,771...80,565,493 JBrowse link
G ENSRNOG00000071195 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 Ensembl chr 7:125,693,106...125,693,670 JBrowse link
G Epha5 EPH receptor A5 located_in ISO (PMID:10375373) RGD PMID:10375373 NCBI chr14:23,653,393...24,020,129
Ensembl chr14:23,653,393...24,017,317 		JBrowse link
G F12 coagulation factor XII is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:9,207,683...9,215,530
Ensembl chr17:9,207,683...9,215,530 		JBrowse link
G Fkrp fukutin related protein located_in ISO (PMID:15213246) RGD PMID:15213246 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Hcrt hypocretin neuropeptide precursor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:85,689,979...85,691,214
Ensembl chr10:85,689,465...85,691,210 		JBrowse link
G Hgfac HGF activator is_active_in
located_in 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:12923239) 		GO_Central
Ensembl
RGD		 PMID:12923239 GO_REF:0000033 GO_REF:0000107 NCBI chr14:75,707,588...75,714,182
Ensembl chr14:75,707,591...75,714,278 		JBrowse link
G Hm13 histocompatibility minor 13 located_in ISO
IEA 		(PMID:15998642), (PMID:16829952)
GO_REF:0000107 		RGD
Ensembl		 PMID:15998642 PMID:16829952 GO_REF:0000107 NCBI chr 3:141,145,792...141,183,557
Ensembl chr 3:141,145,782...141,184,703 		JBrowse link
G Lin28a lin-28 homolog A located_in ISO
IEA 		(PMID:23102813)
GO_REF:0000044
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:23102813 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:146,227,119...146,244,122
Ensembl chr 5:146,227,119...146,244,122 		JBrowse link
G LOC100359505 40S ribosomal protein S21-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396
Ensembl chr 5:71,304,145...71,304,396 		JBrowse link
G LOC100912027 60S ribosomal protein L27-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:74,704,046...74,704,469
Ensembl chr 8:74,704,059...74,704,469 		JBrowse link
G Lrat lecithin retinol acyltransferase located_in
is_active_in 		IDA
IEA
IBA 		PMID:18544127
GO_REF:0000044
GO_REF:0000033 		UniProt
GO_Central		 PMID:18544127 GO_REF:0000033 GO_REF:0000044, RGD:6893660 NCBI chr 2:170,562,148...170,571,212
Ensembl chr 2:168,266,877...168,273,619 		JBrowse link
G Mta1 metastasis associated 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor located_in ISO (PMID:18816594) RGD PMID:18816594 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Myoc myocilin located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,976,730...74,987,128
Ensembl chr13:74,976,730...74,987,127 		JBrowse link
G Pkm pyruvate kinase M1/2 located_in ISS
ISO 		GO_REF:0000024
(PMID:28575669) 		UniProt
RGD		 PMID:28575669 GO_REF:0000024 NCBI chr 8:60,057,629...60,079,600
Ensembl chr 8:60,057,402...60,079,599 		JBrowse link
G Pkm_v1 pyruvate kinase M1/2, variant 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Pkm_v2 pyruvate kinase M1/2, variant 2 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
G Psen1 presenilin 1 located_in ISO
IEA 		(PMID:9632714)
GO_REF:0000107 		RGD
Ensembl		 PMID:9632714 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Ptgds prostaglandin D2 synthase located_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000044
GO_REF:0000107
(PMID:9065498) 		UniProt
Ensembl
RGD		 PMID:9065498 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 3:8,281,899...8,284,833
Ensembl chr 3:8,281,899...8,284,833 		JBrowse link
G Rab14 RAB14, member RAS oncogene family located_in IDA PMID:15004230 UniProt PMID:15004230 RGD:8554557 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172 		JBrowse link
G Rangrf RAN guanine nucleotide release factor located_in ISO (PMID:23420830) RGD PMID:23420830 NCBI chr10:53,677,467...53,678,880
Ensembl chr10:53,677,467...53,678,840 		JBrowse link
G Rpl18 ribosomal protein L18 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:96,188,811...96,191,452
Ensembl chr 1:96,188,112...96,191,452 		JBrowse link
G Rpl27 ribosomal protein L27 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193 		JBrowse link
G Rpl27l1 ribosomal protein L27 like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:64,321,142...64,321,627
Ensembl chr  X:64,321,142...64,321,628 		JBrowse link
G Rpl27l7 ribosomal protein L27 like 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr11:61,911,180...61,911,639
Ensembl chr11:61,911,204...61,911,663 		JBrowse link
G Rpl4 ribosomal protein L4 located_in ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 8:64,671,177...64,676,301
Ensembl chr 8:64,671,160...64,676,306 		JBrowse link
G Rpl6 ribosomal protein L6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921 		JBrowse link
G Rpn1 ribophorin I located_in IEA
ISO 		GO_REF:0000107
(PMID:25009997) 		Ensembl
RGD		 PMID:25009997 GO_REF:0000107 NCBI chr 4:120,543,667...120,565,069
Ensembl chr 4:120,543,667...120,565,069 		JBrowse link
G Rps21 ribosomal protein S21 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470
Ensembl chr 5:167,346,201...167,347,470 		JBrowse link
G Rps23 ribosomal protein S23 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918 		JBrowse link
G Rps26 ribosomal protein S26 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:1,057,332...1,058,882
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps28 ribosomal protein S28 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps29 ribosomal protein S29 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:87,635,229...87,636,627
Ensembl chr 6:87,635,230...87,636,636
Ensembl chr13:87,635,230...87,636,636 		JBrowse link
G Rps29-ps19 ribosomal protein S29, pseudogene 19 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr15:18,797,120...18,797,499
Ensembl chr15:18,797,223...18,797,393 		JBrowse link
G Sppl3 signal peptide peptidase like 3 located_in ISO (PMID:15998642) RGD PMID:15998642 NCBI chr12:41,515,635...41,600,079
Ensembl chr12:41,515,640...41,600,126 		JBrowse link
G Stx17 syntaxin 17 NOT|located_in ISO (PMID:10930465) RGD PMID:10930465 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Suco SUN domain containing ossification factor located_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:20440000)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20440000 GO_REF:0000024 GO_REF:0000107 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896 		JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 located_in ISO (PMID:24454821) RGD PMID:24454821 NCBI chr 4:149,069,252...149,239,585
Ensembl chr 4:149,069,260...149,239,620 		JBrowse link
G Tmem97 transmembrane protein 97 located_in ISS
ISO 		GO_REF:0000024
(PMID:19583955) 		UniProt
RGD		 PMID:19583955 GO_REF:0000024 NCBI chr10:63,438,228...63,447,311
Ensembl chr10:63,438,222...63,589,730 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in ISO
IEA 		(PMID:26255671)
GO_REF:0000107 		RGD
Ensembl		 PMID:26255671 GO_REF:0000107 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg5 ALG5, dolichyl-phosphate beta-glucosyltransferase is_active_in ISO
IEA 		UniProtKB:P40350 (PMID:10359825)
GO_REF:0000107 		RGD
Ensembl		 PMID:10359825 GO_REF:0000107 NCBI chr 2:138,936,998...138,951,228
Ensembl chr 2:138,936,993...138,951,216 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin located_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:11001928)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:11001928 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:5,727,111...5,845,338
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 IDA gonadotropin-releasing hormone-associated peptide RGD PMID:2183089 RGD:9685146 NCBI chr15:41,972,482...41,976,690
Ensembl chr15:41,972,905...41,973,581
Ensembl chr15:41,972,905...41,973,581 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128 		JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,656,360...87,658,849
Ensembl chr 6:87,656,349...87,658,177 		JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:152,054,562...152,056,769
Ensembl chr  X:152,054,452...152,056,761 		JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:148,274,060...148,277,708
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr10:82,771,878...82,775,840
Ensembl chr10:82,771,538...82,775,870 		JBrowse link
G Rpl27 ribosomal protein L27 located_in ISS
ISO 		GO_REF:0000024
(PMID:24930395) 		UniProt
RGD		 PMID:24930395 GO_REF:0000024 NCBI chr10:86,375,511...86,379,210
Ensembl chr10:86,375,454...86,379,193 		JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:107,068,929...107,070,963
Ensembl chr 8:107,068,480...107,070,914
Ensembl chr12:107,068,480...107,070,914 		JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 9:41,647,397...41,651,441
Ensembl chr 9:41,647,426...41,662,129
Ensembl chr 8:41,647,426...41,662,129 		JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 4:148,864,048...148,867,612
Ensembl chr 4:148,864,044...148,867,612
Ensembl chr 3:148,864,044...148,867,612 		JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 3:22,753,255...22,756,217
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr12:35,347,493...35,352,011
Ensembl chr12:35,347,497...35,351,921 		JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 7:9,416,003...9,417,442
Ensembl chr 7:9,416,004...9,417,450
Ensembl chr 7:9,416,004...9,417,450 		JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:83,643,066...83,646,056
Ensembl chr 1:83,643,130...83,646,206
Ensembl chr19:83,643,130...83,646,206 		JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:135,295,920...135,298,506
Ensembl chr 1:135,295,919...135,298,535
Ensembl chr 8:135,295,919...135,298,535 		JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr20:4,931,427...4,935,538
Ensembl chr20:4,931,768...4,938,315 		JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:16,819,095...16,820,476
Ensembl chr 5:16,819,304...16,820,475
Ensembl chr 9:16,819,304...16,820,475
Ensembl chr 3:16,819,304...16,820,475
Ensembl chr 5:16,819,304...16,820,475 		JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:153,387,133...153,387,476
Ensembl chr 5:153,387,176...153,387,427 		JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918 		JBrowse link
G Rps26 ribosomal protein S26 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:1,057,332...1,058,882
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps26l5 ribosomal protein S26 like 5 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:107,822,185...107,822,525
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps28 ribosomal protein S28 located_in ISS
ISO 		GO_REF:0000024
(PMID:24930395) 		UniProt
RGD		 PMID:24930395 GO_REF:0000024 NCBI chr 7:14,607,801...14,609,170
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:87,635,229...87,636,627
Ensembl chr 6:87,635,230...87,636,636
Ensembl chr13:87,635,230...87,636,636 		JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680 		JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:128,728,761...128,732,736
Ensembl chr 8:119,851,225...119,855,247 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr16:18,918,614...18,920,807
Ensembl chr16:18,900,616...18,920,807 		JBrowse link
rough endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD (All species) (All species) NCBI chr12:19,406,133...19,413,713
Ensembl chr12:19,407,360...19,413,651 		JBrowse link
G Edn1 endothelin 1 IDA RGD PMID:10903535 RGD:8662311 NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885 		JBrowse link
G Lrpap1 LDL receptor related protein associated protein 1 located_in
is_active_in 		IDA
IEA
IBA
ISO 		GO_REF:0000044
GO_REF:0000107
GO_REF:0000033
(PMID:7774585) 		UniProt
Ensembl
GO_Central
RGD		 PMID:7774585 PMID:8223699 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107, RGD:1641935 NCBI chr14:75,651,371...75,663,380
Ensembl chr14:75,651,376...75,665,414 		JBrowse link
G Lyz2 lysozyme 2 IDA RGD PMID:9208328 RGD:1599861 NCBI chr 7:52,906,810...52,912,154
Ensembl chr 7:52,906,811...52,912,106 		JBrowse link
G Resp18 regulated endocrine-specific protein 18 IDA RGD PMID:8132649 RGD:69957 NCBI chr 9:76,765,179...76,771,824
Ensembl chr 9:76,764,590...76,778,722 		JBrowse link
G Vtn vitronectin IDA RGD PMID:10192552 RGD:10003091 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810 		JBrowse link
rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldob aldolase, fructose-bisphosphate B IDA RGD PMID:234468 RGD:2313431 NCBI chr 5:63,889,045...63,902,086
Ensembl chr 5:63,889,046...63,902,116 		JBrowse link
G Ccdc47 coiled-coil domain containing 47 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:91,130,303...91,148,829
Ensembl chr10:91,130,303...91,148,881 		JBrowse link
G Maco1 macoilin 1 located_in
is_active_in 		ISO
IEA
IBA
ISS 		(PMID:21589894)
GO_REF:0000044
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033
GO_REF:0000024 		RGD
UniProt
Ensembl
InterPro
GO_Central		 PMID:21589894 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:147,012,416...147,075,265
Ensembl chr 5:147,012,867...147,075,001 		JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:182,540,377...182,572,684
Ensembl chr 2:182,540,567...182,588,488 		JBrowse link
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:158,340,674...158,367,581
Ensembl chr 5:158,340,490...158,367,620 		JBrowse link
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255 		JBrowse link
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Suco SUN domain containing ossification factor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,192,808...74,257,896
Ensembl chr13:74,193,573...74,257,896 		JBrowse link
G Tmem97 transmembrane protein 97 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:63,438,228...63,447,311
Ensembl chr10:63,438,222...63,589,730 		JBrowse link
G Uba1 ubiquitin-like modifier activating enzyme 1 located_in IEA
ISO 		GO_REF:0000107
(PMID:1376922) 		Ensembl
RGD		 PMID:1376922 GO_REF:0000107 NCBI chr  X:1,508,700...1,530,677
Ensembl chr  X:1,508,666...1,530,636 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A located_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000044
(PMID:26000482) 		UniProt
Ensembl
RGD		 PMID:26000482 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 5:137,376,562...137,385,351
Ensembl chr 5:137,376,564...137,385,351 		JBrowse link
Sec61 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6ip1 ARL6 interacting reticulophagy regulator 1 part_of IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:10508919) 		GO_Central
Ensembl
RGD		 PMID:10508919 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:172,430,475...172,439,990
Ensembl chr 1:172,430,489...172,439,994 		JBrowse link
G ENSRNOG00000067115 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:239,449,978...239,457,959 JBrowse link
G Sec61a1 SEC61 translocon subunit alpha 1 part_of IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:31831667) 		GO_Central
Ensembl
RGD		 PMID:31831667 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:120,973,519...120,987,871
Ensembl chr 4:120,960,626...120,987,925 		JBrowse link
G Sec61a2 SEC61 translocon subunit alpha 2 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000107 		GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:72,407,574...72,445,630
Ensembl chr17:72,407,671...72,434,494 		JBrowse link
G Sec61b SEC61 translocon subunit beta part_of IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000107
GO_REF:0000002
(PMID:31831667) 		GO_Central
UniProt
Ensembl
InterPro
RGD		 PMID:31831667 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:61,773,594...61,781,804
Ensembl chr 5:61,773,594...61,781,804 		JBrowse link
G Sec61g Sec61 translocon subunit gamma part_of ISO (PMID:31831667) RGD PMID:31831667 NCBI chr14:90,899,766...90,906,143
Ensembl chr14:90,899,768...90,906,162
Ensembl chr 9:90,899,768...90,906,162 		JBrowse link
G Ssr3 signal sequence receptor subunit 3 NAS RGD PMID:7916687 RGD:61758 NCBI chr 2:149,605,005...149,625,069
Ensembl chr 2:149,605,005...149,625,132 		JBrowse link
G Ssr4 signal sequence receptor subunit 4 IDA RGD PMID:7916687 RGD:61758 NCBI chr  X:151,524,191...151,528,218
Ensembl chr  X:151,524,009...151,528,202 		JBrowse link
Sec62/Sec63 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec63 SEC63 homolog, protein translocation regulator part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:46,245,101...46,314,055
Ensembl chr20:46,245,101...46,314,055 		JBrowse link
signal recognition particle receptor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rp9 RP9, pre-mRNA splicing factor part_of
located_in 		ISO
IEA 		(PMID:15652350)
GO_REF:0000107 		RGD
Ensembl		 PMID:15652350 GO_REF:0000107 NCBI chr 8:20,955,447...21,005,225
Ensembl chr 8:20,941,362...21,005,175 		JBrowse link
G Srpra SRP receptor subunit alpha part_of ISO
IEA 		(PMID:16439358)
GO_REF:0000002 		RGD
InterPro		 PMID:16439358 GO_REF:0000002 NCBI chr 8:33,560,365...33,566,458
Ensembl chr 8:33,560,348...33,566,470 		JBrowse link
G Srprb SRP receptor subunit beta part_of IBA
ISO 		GO_REF:0000033
(PMID:16439358) 		GO_Central
RGD		 PMID:16439358 GO_REF:0000033 NCBI chr 8:103,768,685...103,782,632 JBrowse link
Ssh1 translocon complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000064831 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 5:55,583,379...55,585,551 JBrowse link
G LOC134478824 protein transport protein Sec61 subunit gamma-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:80,709,227...80,709,505 JBrowse link
G Sec61g Sec61 translocon subunit gamma part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:90,899,766...90,906,143
Ensembl chr14:90,899,768...90,906,162
Ensembl chr 9:90,899,768...90,906,162 		JBrowse link
G Sec61g-ps4 Sec61 translocon subunit gamma, pseudogene 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:113,427,370...113,427,696
Ensembl chr  X:113,427,440...113,427,646 		JBrowse link
G Sec61gl2 Sec61 translocon subunit gamma like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:75,638,449...75,638,655
Ensembl chr17:75,638,449...75,638,655 		JBrowse link
G Sec61gl4 SEC61 translocon subunit gamma like 4 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:41,302,673...41,303,608 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      endomembrane system 4422
        endoplasmic reticulum 1913
          rough endoplasmic reticulum 100
            rough endoplasmic reticulum cisterna 0
            rough endoplasmic reticulum lumen 6
            rough endoplasmic reticulum membrane + 56
Path 2
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      intracellular anatomical structure 15532
        intracellular organelle 13785
          intracellular membrane-bounded organelle 12185
            endoplasmic reticulum 1913
              rough endoplasmic reticulum 100
                rough endoplasmic reticulum cisterna 0
                rough endoplasmic reticulum lumen 6
                rough endoplasmic reticulum membrane + 56
paths to the root