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ONTOLOGY REPORT - ANNOTATIONS

Term:vacuolar lumen
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Accession:GO:0005775 term browser browse the term
Definition:The volume enclosed within the vacuolar membrane.


show annotations for term's descendants           Sort by:
vacuolar lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln5 CLN5, intracellular trafficking protein located_in ISO (PMID:15207259) RGD PMID:15207259 NCBI chr15:79,893,573...79,903,438
Ensembl chr15:79,893,548...79,903,438
Ensembl chr 2:79,893,548...79,903,438 		JBrowse link
acrosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata31 spermatogenesis associated 31 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:243,648...249,434
Ensembl chr17:243,654...249,434 		JBrowse link
G Zp3r zona pellucida 3 receptor located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:42,019,998...42,064,836
Ensembl chr13:42,020,018...42,064,812 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
MGI:2148550 (PMID:9668092)		 Ensembl
RGD		 PMID:9668092 GO_REF:0000107 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISS
ISO		 GO_REF:0000024
(PMID:23904161)		 UniProt
RGD		 PMID:23904161 GO_REF:0000024 NCBI chr 7:9,915,667...9,922,996
Ensembl chr 7:9,917,484...9,922,922 		JBrowse link
G Prtn3 proteinase 3 located_in ISO (PMID:18462208) RGD PMID:18462208 NCBI chr 7:9,822,123...9,831,300
Ensembl chr 7:9,822,122...9,831,944 		JBrowse link
lysosomal lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp2 acid phosphatase 2, lysosomal located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:77,175,022...77,185,180
Ensembl chr 3:77,175,895...77,185,680 		JBrowse link
G Cubn cubilin IDA RGD PMID:15578272 RGD:2317835 NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231 		JBrowse link
G Epdr1 ependymin related 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr17:45,333,932...45,358,597
Ensembl chr17:45,333,956...45,358,594 		JBrowse link
G Faslg Fas ligand located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Gba1 glucosylceramidase beta 1 located_in ISO (PMID:18022370) RGD PMID:18022370 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Gusb glucuronidase, beta is_active_in ISO MGI:1856041 (PMID:23897660), (PMID:8200966) RGD PMID:8200966 PMID:23897660 NCBI chr12:26,701,188...26,714,718
Ensembl chr12:26,697,951...26,726,905 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase is_active_in ISO (PMID:16960811) RGD PMID:16960811 NCBI chr16:66,105,233...66,137,444
Ensembl chr16:66,105,181...66,136,138 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 located_in TAS Reactome:R-RNO-9626236
Reactome:R-RNO-9626030
Reactome:R-RNO-9622851
Reactome:R-RNO-9626275
Reactome:R-RNO-9626239
Reactome:R-RNO-9626254
Reactome:R-RNO-9625183
Reactome:R-RNO-9626028
Reactome:R-RNO-9624154
Reactome:R-RNO-9625160
Reactome:R-RNO-9625173
Reactome:R-RNO-9626250		 Reactome Reactome:R-RNO-9622851 Reactome:R-RNO-9624154 Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9625183 Reactome:R-RNO-9626028 Reactome:R-RNO-9626030 Reactome:R-RNO-9626236 Reactome:R-RNO-9626239 Reactome:R-RNO-9626250 Reactome:R-RNO-9626254 Reactome:R-RNO-9626275 NCBI chr 6:129,702,376...129,707,907
Ensembl chr 6:129,702,383...129,707,268 		JBrowse link
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 located_in TAS Reactome:R-RNO-9626236
Reactome:R-RNO-9626239
Reactome:R-RNO-9626250
Reactome:R-RNO-9626254
Reactome:R-RNO-9626030
Reactome:R-RNO-9626275
Reactome:R-RNO-9625160
Reactome:R-RNO-9625183
Reactome:R-RNO-9624154
Reactome:R-RNO-9626028
Reactome:R-RNO-9622851
Reactome:R-RNO-9625173		 Reactome Reactome:R-RNO-9622851 Reactome:R-RNO-9624154 Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9625183 Reactome:R-RNO-9626028 Reactome:R-RNO-9626030 Reactome:R-RNO-9626236 Reactome:R-RNO-9626239 Reactome:R-RNO-9626250 Reactome:R-RNO-9626254 Reactome:R-RNO-9626275 NCBI chr 9:15,432,986...15,438,358
Ensembl chr 9:15,433,691...15,438,488 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in TAS Reactome:R-RNO-9625173
Reactome:R-RNO-9626028
Reactome:R-RNO-9625160		 Reactome Reactome:R-RNO-9625160 Reactome:R-RNO-9625173 Reactome:R-RNO-9626028 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Ids iduronate 2-sulfatase is_active_in ISO (PMID:17876721) RGD PMID:17876721 NCBI chr  X:149,025,976...149,046,641
Ensembl chr  X:149,025,976...149,046,663 		JBrowse link
G Idua alpha-L-iduronidase is_active_in ISO MGI:2176236|MGI:2651471 (PMID:17101178), (PMID:9660052) RGD PMID:9660052 PMID:17101178 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,032,171...1,046,522 		JBrowse link
G Lgmn legumain is_active_in
located_in		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:9872320)		 UniProt
Ensembl
RGD		 PMID:9872320 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:121,544,048...121,582,495
Ensembl chr 6:121,544,053...121,582,480 		JBrowse link
G Man2b1 mannosidase, alpha, class 2B, member 1 is_active_in ISO (PMID:9305783) RGD PMID:9305783 NCBI chr19:23,055,092...23,074,398
Ensembl chr19:23,055,097...23,074,389 		JBrowse link
G Manba mannosidase beta is_active_in ISO (PMID:29773673) RGD PMID:29773673 NCBI chr 2:223,910,432...224,002,988
Ensembl chr 2:223,910,432...224,002,983 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase is_active_in ISO (PMID:15537895) RGD PMID:15537895 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Neu1 neuraminidase 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr20:3,897,480...3,901,745
Ensembl chr20:3,897,480...3,901,745 		JBrowse link
G Nsg1 neuronal vesicle trafficking associated 1 located_in IDA
IEA		 PMID:28874679
GO_REF:0000044		 UniProt PMID:28874679 GO_REF:0000044, RGD:13432228 NCBI chr14:72,648,771...72,670,521
Ensembl chr14:72,648,741...72,670,514 		JBrowse link
G Nsg2 neuronal vesicle trafficking associated 2 located_in IDA PMID:28874679 UniProt PMID:28874679 RGD:13432228 NCBI chr10:15,601,594...15,661,441
Ensembl chr10:15,601,596...15,661,441 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Plbd2 phospholipase B domain containing 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr12:36,062,802...36,081,984
Ensembl chr12:36,062,802...36,081,983 		JBrowse link
G Pld3 phospholipase D family, member 3 located_in ISO
IEA
ISS		 (PMID:30312375)
GO_REF:0000044
GO_REF:0000024		 RGD
UniProt		 PMID:30312375 GO_REF:0000024 GO_REF:0000044 NCBI chr 1:82,821,863...82,844,280
Ensembl chr 1:82,821,875...82,844,072 		JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic located_in TAS Reactome:R-RNO-9625160
Reactome:R-RNO-9626028		 Reactome Reactome:R-RNO-9625160 Reactome:R-RNO-9626028 NCBI chr15:24,361,924...24,363,633
Ensembl chr15:24,361,927...24,363,624 		JBrowse link
G Rnaset2 ribonuclease T2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:52,576,344...52,603,151
Ensembl chr 1:52,585,929...52,603,147 		JBrowse link
G Rnaset2-ps1 ribonuclease T2, pseudogene 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 3:138,600,084...138,600,943
Ensembl chr 3:138,600,187...138,600,965
Ensembl chr 3:138,600,187...138,600,965 		JBrowse link
G Scarb2 scavenger receptor class B, member 2 located_in IEA
ISO		 GO_REF:0000107
(PMID:18022370)		 Ensembl
RGD		 PMID:18022370 GO_REF:0000107 NCBI chr14:15,558,271...15,609,813
Ensembl chr14:15,558,236...15,609,813 		JBrowse link
G Sgsh N-sulfoglucosamine sulfohydrolase is_active_in ISO MGI:2151181 (PMID:10561464) RGD PMID:10561464 NCBI chr10:104,596,810...104,613,510
Ensembl chr10:104,598,112...104,613,486 		JBrowse link
lysosomal matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 located_in IDA PMID:18644871 RGD
MGI		 PMID:9038169 PMID:18644871 RGD:10059368, RGD:10412301 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in IDA PMID:18644871 MGI PMID:18644871 RGD:10412301 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20833
    cellular anatomical structure 20633
      cytoplasm 11893
        vacuole 661
          vacuolar lumen 34
            autolysosome lumen 1
            autophagosome lumen 0
            azurophil granule lumen 2
            cytolytic granule lumen 0
            fungal-type vacuole lumen 0
            lysosomal lumen + 30
            phagolysosome vesicle lumen 0
            plant-type vacuole lumen + 0
Path 2
Term Annotations click to browse term
  cellular_component 20833
    cellular anatomical structure 20633
      organelle 13975
        intracellular organelle 13569
          intracellular membrane-bounded organelle 12009
            vacuole 661
              vacuolar lumen 34
                autolysosome lumen 1
                autophagosome lumen 0
                azurophil granule lumen 2
                cytolytic granule lumen 0
                fungal-type vacuole lumen 0
                lysosomal lumen + 30
                phagolysosome vesicle lumen 0
                plant-type vacuole lumen + 0
paths to the root