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ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
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Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807

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secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crhbp corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chrNW_004936549:64,866...78,272
Ensembl chrNW_004936549:64,866...78,272 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436 		JBrowse link
G Fth1 ferritin heavy chain 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004936581:1,118,905...1,120,592 JBrowse link
G Ftl ferritin light chain located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004936664:2,976,325...2,977,878
Ensembl chrNW_004936664:2,976,314...2,977,877 		JBrowse link
G Lamp1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:377,359...389,121
Ensembl chrNW_004936472:378,173...389,381 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:9,584,221...9,622,330
Ensembl chrNW_004936479:9,584,221...9,610,420 		JBrowse link
G LOC101972667 immunity related GTPase M located_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G LOC120886140 ferritin light chain-like located_in IEA UniProt GO_REF:0000044
G Lrrk2 leucine rich repeat kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:376,915...402,539
Ensembl chrNW_004936728:376,852...402,539 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,685,902...1,732,361
Ensembl chrNW_004936541:1,685,923...1,732,420 		JBrowse link
G Sqstm1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase is_active_in ISO (PMID:9668092) MGI PMID:9668092 NCBI chrNW_004936594:4,125,595...4,142,261 JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) UniProt PMID:26771875 NCBI chrNW_004936498:11,164,376...11,180,398
Ensembl chrNW_004936498:11,164,405...11,241,700 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chrNW_004936551:750,940...778,432
Ensembl chrNW_004936551:746,936...778,432 		JBrowse link
G Stx17 syntaxin 17 located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chrNW_004936524:8,324,562...8,381,244
Ensembl chrNW_004936524:8,324,569...8,376,114 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,389,925...19,403,577
Ensembl chrNW_004936486:19,391,324...19,402,332 		JBrowse link
G Pla2g5 phospholipase A2 group V located_in ISO (PMID:16407308) UniProt PMID:16407308 NCBI chrNW_004936474:6,131,915...6,150,810
Ensembl chrNW_004936474:6,131,884...6,150,819 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:377,359...389,121
Ensembl chrNW_004936472:378,173...389,381 		JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:3,428,515...3,436,877
Ensembl chrNW_004936581:3,421,256...3,431,706 		JBrowse link
G Slc48a1 solute carrier family 48 member 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:5,672,952...5,680,502
Ensembl chrNW_004936512:5,672,952...5,684,113 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18224
    cellular anatomical structure 18002
      cytoplasm 10331
        vacuole 566
          lytic vacuole 465
            lysosome 465
              secondary lysosome 22
                autolysosome + 17
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 18224
    cellular anatomical structure 18002
      organelle 13281
        membrane-bounded organelle 12200
          intracellular membrane-bounded organelle 11665
            vacuole 566
              lytic vacuole 465
                lysosome 465
                  secondary lysosome 22
                    autolysosome + 17
                    phagolysosome + 5
paths to the root