Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
go back to main search page
Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807


show annotations for term's descendants           Sort by:
secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRHBP corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chr 2:85,814,399...85,830,598
Ensembl chr 2:85,816,816...85,831,179 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G FTH1 ferritin heavy chain 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr 2:9,535,051...9,537,979 JBrowse link
G FTL ferritin light chain located_in IEA UniProt GO_REF:0000044 NCBI chr 6:54,231,121...54,232,756
Ensembl chr 6:54,231,172...54,232,750 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:78,600,818...78,617,587
Ensembl chr11:78,600,645...78,617,616 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:98,586,718...98,623,939
Ensembl chr  X:98,581,992...98,623,940 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,225...71,945,828 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha located_in IEA Ensembl GO_REF:0000107 NCBI chr17:37,957,830...37,959,505
Ensembl chr17:37,957,507...37,959,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta located_in ISO (PMID:26284655) MGI PMID:26284655 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,069 		JBrowse link
G NCOA4 nuclear receptor coactivator 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:90,505,614...90,531,302
Ensembl chr14:90,505,110...90,531,118 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:17,984,169...18,035,377
Ensembl chr12:17,993,036...18,035,375 		JBrowse link
G SQSTM1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,752,768...78,763,998
Ensembl chr 2:78,752,771...78,763,938 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAA alpha glucosidase is_active_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,315,807...2,339,867
Ensembl chr12:2,315,809...2,341,327 		JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) UniProt PMID:26771875 NCBI chr 9:17,124,181...17,222,741
Ensembl chr 9:17,128,797...17,222,775 		JBrowse link
G RAB39A RAB39A, member RAS oncogene family located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr 9:36,341,339...36,403,690
Ensembl chr 9:36,341,339...36,403,654 		JBrowse link
G STX17 syntaxin 17 located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr 1:241,657,463...241,785,270
Ensembl chr 1:241,657,506...241,765,783 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM8 ADAM metallopeptidase domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:141,221,177...141,233,728
Ensembl chr14:141,221,198...141,232,306 		JBrowse link
G PLA2G5 phospholipase A2 group V located_in ISO (PMID:16407308) UniProt PMID:16407308 NCBI chr 6:78,365,697...78,376,383
Ensembl chr 6:78,302,062...78,376,220 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMP1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:78,600,818...78,617,587
Ensembl chr11:78,600,645...78,617,616 		JBrowse link
G MPEG1 macrophage expressed 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 2:12,194,303...12,196,594
Ensembl chr 2:12,194,327...12,198,351 		JBrowse link
G SLC48A1 solute carrier family 48 member 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 5:78,141,220...78,150,584
Ensembl chr 5:78,141,236...78,150,583 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19752
    cellular anatomical structure 19506
      cytoplasm 10730
        vacuole 603
          lytic vacuole 498
            lysosome 498
              secondary lysosome 21
                autolysosome + 16
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 19752
    cellular anatomical structure 19506
      organelle 13438
        membrane-bounded organelle 12387
          intracellular membrane-bounded organelle 11840
            vacuole 603
              lytic vacuole 498
                lysosome 498
                  secondary lysosome 21
                    autolysosome + 16
                    phagolysosome + 5
paths to the root