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ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
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Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807

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secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crhbp corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chrNW_004624869:1,412,541...1,423,891
Ensembl chrNW_004624869:1,412,499...1,423,932 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Fth1 ferritin heavy chain 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004624926:469,870...471,142 JBrowse link
G Ftl ferritin light chain located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624832:5,046,207...5,047,828
Ensembl chrNW_004624832:5,046,208...5,047,828 		JBrowse link
G Irgm immunity related GTPase M located_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Lamp1 lysosomal associated membrane protein 1 located_in ISO (PMID:26284655) MGI PMID:26284655 NCBI chrNW_004624793:661,322...675,603
Ensembl chrNW_004624793:661,342...675,675 		JBrowse link
G Lamp2 lysosomal associated membrane protein 2 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004624931:297,864...343,314
Ensembl chrNW_004624931:298,328...343,915 		JBrowse link
G LOC101710208 ferritin light chain pseudogene located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624762:16,974,328...16,975,941 JBrowse link
G LOC101714978 ferritin light chain-like located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624759:11,348,458...11,348,920 JBrowse link
G LOC106009954 ferritin light chain 1-like located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624767:13,914,977...13,923,455 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 located_in ISO (PMID:19640926) ParkinsonsUK-UCL PMID:19640926 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta located_in ISO (PMID:26284655) MGI PMID:26284655 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004624928:6,298...32,051
Ensembl chrNW_004624928:18,148...30,594 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 located_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chrNW_004624795:37,059...86,568
Ensembl chrNW_004624795:37,059...89,135 		JBrowse link
G Sqstm1 sequestosome 1 located_in ISO (PMID:19640926)
(PMID:26284655) 		ParkinsonsUK-UCL
MGI		 PMID:19640926 PMID:26284655 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase is_active_in ISO (PMID:9668092) MGI PMID:9668092 NCBI chrNW_004624801:9,217,633...9,235,931
Ensembl chrNW_004624801:9,217,639...9,235,931 		JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) UniProt PMID:26771875 NCBI chrNW_004624845:6,809,963...6,917,225
Ensembl chrNW_004624845:6,900,564...6,916,006 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chrNW_004624784:2,679,281...2,709,514
Ensembl chrNW_004624784:2,679,225...2,710,545 		JBrowse link
G Stx17 syntaxin 17 located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chrNW_004624825:967,493...1,066,513
Ensembl chrNW_004624825:972,755...1,066,597 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 located_in ISO (PMID:17548643) BHF-UCL PMID:17548643 NCBI chrNW_004624737:13,459,274...13,474,686 JBrowse link
G Pla2g5 phospholipase A2 group V located_in ISO (PMID:16407308) UniProt PMID:16407308 NCBI chrNW_004624764:5,196,215...5,207,138
Ensembl chrNW_004624764:5,196,215...5,207,232 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal associated membrane protein 1 located_in ISO (PMID:23395172) MGI PMID:23395172 NCBI chrNW_004624793:661,322...675,603
Ensembl chrNW_004624793:661,342...675,675 		JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in ISO (PMID:31537793) UniProt PMID:31537793 NCBI chrNW_004624864:1,470,862...1,474,957
Ensembl chrNW_004624864:1,470,887...1,473,046 		JBrowse link
G Slc48a1 solute carrier family 48 member 1 is_active_in ISO (PMID:23395172) MGI PMID:23395172 NCBI chrNW_004624816:4,476,502...4,496,641
Ensembl chrNW_004624816:4,476,491...4,485,030 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18608
    cellular anatomical structure 18473
      cytoplasm 10529
        vacuole 559
          lytic vacuole 461
            lysosome 461
              secondary lysosome 25
                autolysosome + 20
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 18608
    cellular anatomical structure 18473
      organelle 13034
        membrane-bounded organelle 11918
          intracellular membrane-bounded organelle 11377
            vacuole 559
              lytic vacuole 461
                lysosome 461
                  secondary lysosome 25
                    autolysosome + 20
                    phagolysosome + 5
paths to the root