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ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
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Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807


show annotations for term's descendants           Sort by:
secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crhbp corticotropin releasing hormone binding protein located_in ISO
ISS 		RGD
UniProt
GO_Central		 PMID:10524337 GO_REF:0000024 GO_REF:0000096 RGD:5490549 NCBI chr13:95,567,884...95,581,339
Ensembl chr13:95,567,879...95,581,432 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in IDA (PMID:16714284) UniProt PMID:16714284 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989 		JBrowse link
G Fth1 ferritin heavy polypeptide 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr19:9,957,964...9,962,475
Ensembl chr19:9,957,962...9,962,462 		JBrowse link
G Ftl1 ferritin light polypeptide 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr 7:45,107,368...45,109,310
Ensembl chr 7:45,107,368...45,109,308 		JBrowse link
G Irgm1 immunity-related GTPase family M member 1 located_in IDA (PMID:16888103) UniProt PMID:16888103 NCBI chr11:48,756,072...48,762,247
Ensembl chr11:48,752,795...48,762,510 		JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in IDA (PMID:26284655) MGI PMID:26284655 NCBI chr 8:13,209,161...13,225,338
Ensembl chr 8:13,209,161...13,225,338 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr  X:37,488,524...37,545,337
Ensembl chr  X:37,490,234...37,545,331 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 located_in IEA
ISO 		Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:91,556,994...91,700,327
Ensembl chr15:91,557,378...91,700,323 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr 2:155,118,284...155,119,993
Ensembl chr 2:155,118,217...155,119,993 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta located_in IDA (PMID:26284655) MGI PMID:26284655 NCBI chr 8:122,317,177...122,325,499
Ensembl chr 8:122,317,100...122,325,499 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr14:31,881,884...31,901,210
Ensembl chr14:31,881,822...31,901,812 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr18:30,390,441...30,481,179
Ensembl chr18:30,405,800...30,481,179 		JBrowse link
G Plekhm1 pleckstrin homology domain containing, family M (with RUN domain) member 1 located_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:103,255,101...103,303,531
Ensembl chr11:103,255,101...103,303,513 		JBrowse link
G Plekhm2 pleckstrin homology domain containing, family M (with RUN domain) member 2 located_in ISS UniProt GO_REF:0000024 NCBI chr 4:141,353,043...141,391,457
Ensembl chr 4:141,353,045...141,392,210 		JBrowse link
G Sqstm1 sequestosome 1 located_in IDA
ISO 		(PMID:26284655) MGI
GO_Central		 PMID:26284655 GO_REF:0000119 NCBI chr11:50,090,979...50,105,303
Ensembl chr11:50,090,193...50,101,654 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa glucosidase, alpha, acid is_active_in IMP (PMID:9668092) MGI PMID:9668092 NCBI chr11:119,158,789...119,176,284
Ensembl chr11:119,158,713...119,176,280 		JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plekhm1 pleckstrin homology domain containing, family M (with RUN domain) member 1 located_in IEA UniProt GO_REF:0000044 NCBI chr11:103,255,101...103,303,531
Ensembl chr11:103,255,101...103,303,513 		JBrowse link
G Rab30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) UniProt PMID:26771875 NCBI chr 7:92,390,845...92,493,743
Ensembl chr 7:92,390,811...92,493,743 		JBrowse link
G Rab39 RAB39, member RAS oncogene family located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr 9:53,595,410...53,617,532
Ensembl chr 9:53,595,410...53,617,532 		JBrowse link
G Stx17 syntaxin 17 located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr 4:48,124,912...48,186,507
Ensembl chr 4:48,124,915...48,186,507 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 a disintegrin and metallopeptidase domain 8 located_in ISO
ISS 		GO_Central
BHF-UCL		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:139,558,845...139,573,016
Ensembl chr 7:139,558,845...139,572,475 		JBrowse link
G Pla2g5 phospholipase A2, group V located_in IDA (PMID:16407308) UniProt PMID:16407308 NCBI chr 4:138,526,558...138,590,784
Ensembl chr 4:138,526,555...138,590,793 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal-associated membrane protein 1 located_in IDA (PMID:23395172) MGI PMID:23395172 NCBI chr 8:13,209,161...13,225,338
Ensembl chr 8:13,209,161...13,225,338 		JBrowse link
G Mpeg1 macrophage expressed gene 1 is_active_in ISO
ISS 		GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr19:12,438,134...12,442,649
Ensembl chr19:12,438,143...12,442,649 		JBrowse link
G Pfpl pore forming protein-like is_active_in ISO GO_Central GO_REF:0000119 NCBI chr19:12,405,290...12,409,474
Ensembl chr19:12,405,269...12,409,474 		JBrowse link
G Slc48a1 solute carrier family 48 (heme transporter), member 1 is_active_in IMP (PMID:23395172) MGI PMID:23395172 NCBI chr15:97,682,246...97,690,573
Ensembl chr15:97,676,401...97,690,573 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28570
    cellular anatomical structure 19611
      cytoplasm 12113
        vacuole 718
          lytic vacuole 606
            lysosome 606
              secondary lysosome 24
                autolysosome + 18
                phagolysosome + 6
Path 2
Term Annotations click to browse term
  cellular_component 28570
    cellular anatomical structure 19611
      organelle 13672
        membrane-bounded organelle 12690
          intracellular membrane-bounded organelle 12120
            vacuole 718
              lytic vacuole 606
                lysosome 606
                  secondary lysosome 24
                    autolysosome + 18
                    phagolysosome + 6
paths to the root