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ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
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Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807


show annotations for term's descendants           Sort by:
secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRHBP corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chr 3:29,726,316...29,737,748
Ensembl chr 3:29,705,031...29,758,111 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in IEA
ISS 		Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033 		JBrowse link
G FTH1 ferritin heavy chain 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr18:54,466,167...54,468,733
Ensembl chr18:54,466,023...54,468,732 		JBrowse link
G FTL ferritin light chain located_in IEA UniProt GO_REF:0000044 NCBI chr 1:107,418,457...107,419,923
Ensembl chr 1:107,418,458...107,419,923 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:92,405,946...92,444,527
Ensembl chr  X:92,407,950...92,444,765 		JBrowse link
G LOC102154317 ferritin light chain-like located_in IEA UniProt GO_REF:0000044 NCBI chr 6:10,515,824...10,516,618 JBrowse link
G LOC102155200 ferritin light chain located_in IEA UniProt GO_REF:0000044 NCBI chr23:16,294,409...16,295,335 JBrowse link
G LOC606863 immunity-related GTPase family M protein-like located_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chr11:506,981...523,338
Ensembl chr11:509,636...510,829 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr24:23,672,343...23,673,937
Ensembl chr24:23,633,579...23,673,921 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta located_in ISO (PMID:26284655) MGI PMID:26284655 NCBI chr 5:65,669,553...65,683,445 JBrowse link
G NCOA4 nuclear receptor coactivator 4 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr28:1,801,655...1,867,705
Ensembl chr28:1,802,678...1,825,020 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,663,381...48,800,350
Ensembl chr 7:48,663,381...48,800,437 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 located_in ISO (PMID:28325809) UniProt PMID:28325809
G SQSTM1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:1,859,776...1,869,289
Ensembl chr11:1,859,465...1,870,755 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAA alpha glucosidase is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 9:1,601,092...1,615,582
Ensembl chr 9:1,601,121...1,656,597 		JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) UniProt PMID:26771875 NCBI chr21:16,097,726...16,187,910
Ensembl chr21:16,097,758...16,178,674 		JBrowse link
G RAB39A RAB39A, member RAS oncogene family located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr 5:24,516,541...24,546,743
Ensembl chr 5:24,519,240...24,546,606 		JBrowse link
G STX17 syntaxin 17 located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr11:56,885,874...56,951,714
Ensembl chr11:56,885,174...56,945,767 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM8 ADAM metallopeptidase domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:40,853,665...40,865,604
Ensembl chr28:40,855,509...40,863,747 		JBrowse link
G PLA2G5 phospholipase A2 group V located_in ISO (PMID:16407308) UniProt PMID:16407308 NCBI chr 2:78,762,851...78,781,642
Ensembl chr 2:78,762,852...78,781,983 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMP1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:60,678,116...60,695,619
Ensembl chr22:60,678,111...60,694,924 		JBrowse link
G MPEG1 macrophage expressed 1 is_active_in ISO (PMID:31537793) UniProt PMID:31537793 NCBI chr18:37,530,895...37,535,334
Ensembl chr18:37,531,032...37,533,179 		JBrowse link
G SLC48A1 solute carrier family 48 member 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,970,510...6,978,837
Ensembl chr27:6,971,402...6,978,942 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23079
    cellular anatomical structure 22788
      cytoplasm 11328
        vacuole 607
          lytic vacuole 497
            lysosome 497
              secondary lysosome 24
                autolysosome + 19
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 23079
    cellular anatomical structure 22788
      organelle 17346
        membrane-bounded organelle 16059
          intracellular membrane-bounded organelle 15478
            vacuole 607
              lytic vacuole 497
                lysosome 497
                  secondary lysosome 24
                    autolysosome + 19
                    phagolysosome + 5
paths to the root