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ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
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Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807


show annotations for term's descendants           Sort by:
secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRHBP corticotropin releasing hormone binding protein ISO RGD PMID:10524337 RGD:5490549 NCBI chr 5:38,327,305...38,343,901
Ensembl chr 5:38,845,925...38,869,549 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FTH1 ferritin heavy chain 1 located_in ISO (PMID:25327288) MGI PMID:25327288 NCBI chr11:57,329,163...57,332,248 JBrowse link
G FTL ferritin light chain located_in IEA UniProt GO_REF:0000044 NCBI chr19:45,966,431...45,968,015
Ensembl chr19:54,788,854...54,790,465 		JBrowse link
G IRGM immunity related GTPase M located_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chr 5:146,274,097...146,329,979
Ensembl chr 5:152,278,581...152,308,182 		JBrowse link
G LAMP1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,442,507...94,464,061
Ensembl chr13:113,507,401...113,530,457 		JBrowse link
G LAMP2 lysosomal associated membrane protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:109,700,185...109,743,579
Ensembl chr  X:119,886,982...119,929,896 		JBrowse link
G LOC100971948 ferritin light chain located_in IEA UniProt GO_REF:0000044 NCBI chr11:43,650,332...43,651,204
Ensembl chr19:54,788,854...54,790,465 		JBrowse link
G LOC117978823 battenin located_in ISO (PMID:16714284) UniProt PMID:16714284
G LRRK2 leucine rich repeat kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,343,621...48,488,337
Ensembl chr12:49,205,930...49,350,462 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha located_in IEA Ensembl GO_REF:0000107 NCBI chr20:30,887,345...30,888,986
Ensembl chr20:32,010,284...32,020,411 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta located_in ISO (PMID:26284655) MGI PMID:26284655 NCBI chr16:68,063,869...68,076,772 JBrowse link
G NCOA4 nuclear receptor coactivator 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:43,159,014...43,184,558
Ensembl chr10:46,420,952...46,443,223 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:35,203,896...35,336,512
Ensembl chr18:38,754,789...38,882,037 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:11,836,726...11,891,614
Ensembl chr17:12,011,604...12,063,912 		JBrowse link
G SQSTM1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:174,960,727...174,989,946
Ensembl chr 5:182,284,436...182,299,093 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAA alpha glucosidase is_active_in IEA Ensembl GO_REF:0000107 NCBI chr17:74,188,296...74,206,593
Ensembl chr17:79,723,699...79,741,839 		JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) UniProt PMID:26771875 NCBI chr11:78,040,163...78,136,785
Ensembl chr11:81,659,732...81,711,750 		JBrowse link
G RAB39A RAB39A, member RAS oncogene family located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr11:102,814,825...102,851,700
Ensembl chr11:106,291,348...106,326,587 		JBrowse link
G STX17 syntaxin 17 located_in ISO (PMID:37821429) UniProt PMID:37821429 NCBI chr 9:70,989,913...71,058,374
Ensembl chr 9:99,107,243...99,168,801 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM8 ADAM metallopeptidase domain 8 located_in IEA Ensembl GO_REF:0000107 Ensembl chr10:134,172,724...134,186,227 JBrowse link
G PLA2G5 phospholipase A2 group V located_in ISO (PMID:16407308) UniProt PMID:16407308 NCBI chr 1:18,983,104...19,046,834
Ensembl chr 1:20,068,110...20,089,840 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMP1 lysosomal associated membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:94,442,507...94,464,061
Ensembl chr13:113,507,401...113,530,457 		JBrowse link
G MPEG1 macrophage expressed 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr11:54,425,904...54,442,631
Ensembl chr11:57,880,109...57,882,259 		JBrowse link
G SLC48A1 solute carrier family 48 member 1 is_active_in ISO (PMID:23395172) MGI PMID:23395172 NCBI chr12:40,950,511...40,977,994 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20330
    cellular anatomical structure 19896
      cytoplasm 11377
        vacuole 598
          lytic vacuole 501
            lysosome 501
              secondary lysosome 23
                autolysosome + 18
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 20330
    cellular anatomical structure 19896
      organelle 14817
        membrane-bounded organelle 13344
          intracellular membrane-bounded organelle 12792
            vacuole 598
              lytic vacuole 501
                lysosome 501
                  secondary lysosome 23
                    autolysosome + 18
                    phagolysosome + 5
paths to the root