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ONTOLOGY REPORT - ANNOTATIONS

Term:secondary lysosome
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Accession:GO:0005767 term browser browse the term
Definition:Vacuole formed by the fusion of a lysosome with an organelle (autosome) or with a primary phagosome.
Synonyms:xref: NIF_Subcellular:sao1549842807


show annotations for term's descendants           Sort by:
secondary lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crhbp corticotropin releasing hormone binding protein IDA RGD PMID:10524337 RGD:5490549 NCBI chr 2:26,692,403...26,704,710
Ensembl chr 2:26,692,403...26,704,710 		JBrowse link
autolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4933416E14Rikl RIKEN cDNA 4933416E14 gene like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:12,341,075...12,371,179
Ensembl chr  X:12,369,695...12,371,607 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin located_in ISO
IEA 		(PMID:16714284)
GO_REF:0000107 		RGD
Ensembl		 PMID:16714284 GO_REF:0000107 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Fth1 ferritin heavy chain 1 located_in ISO (PMID:25327288) RGD PMID:25327288 NCBI chr 1:206,627,142...206,629,430
Ensembl chr 1:206,627,103...206,725,424 		JBrowse link
G Ftl1 ferritin light chain 1 located_in ISO
IEA 		(PMID:25327288)
GO_REF:0000044 		RGD
UniProt		 PMID:25327288 GO_REF:0000044 NCBI chr 1:95,936,387...95,938,234
Ensembl chr 1:95,936,387...95,939,725
Ensembl chr10:95,936,387...95,939,725
Ensembl chr 2:95,936,387...95,939,725 		JBrowse link
G Ftl1l1 ferritin light chain 1 like 1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr  X:131,765,928...131,766,840
Ensembl chr  X:131,765,916...131,766,839 		JBrowse link
G Ftl1l2 ferritin light chain 1 like 2 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 6:73,242,612...73,243,527
Ensembl chr 6:73,242,608...73,253,291
Ensembl chr 2:73,242,608...73,253,291 		JBrowse link
G Ftl1l5 ferritin light chain 1 like 5 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 7:12,220,109...12,221,018
Ensembl chr 7:12,220,103...12,221,023
Ensembl chr 2:12,220,103...12,221,023 		JBrowse link
G Ftl1l6 ferritin light chain 1 like 6 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 2:51,392,265...51,393,293
Ensembl chr 2:51,392,298...51,393,071 		JBrowse link
G Ftl1l7 ferritin light chain 1 like 7 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:165,377,580...165,378,490
Ensembl chr 1:165,377,553...165,378,489
Ensembl chr 2:165,377,553...165,378,489 		JBrowse link
G Irgm immunity-related GTPase M located_in ISO
IEA 		(PMID:16888103)
GO_REF:0000107 		RGD
Ensembl		 PMID:16888103 GO_REF:0000107 NCBI chr10:33,233,513...33,241,594
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO 		GO_REF:0000107
(PMID:26284655) 		Ensembl
RGD		 PMID:26284655 GO_REF:0000107 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 located_in ISO
IEA 		(PMID:25327288)
GO_REF:0000107 		RGD
Ensembl		 PMID:25327288 GO_REF:0000107 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522 		JBrowse link
G LOC100360087 ferritin light chain 1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:146,322,749...146,323,666
Ensembl chr 5:146,322,756...146,323,666
Ensembl chr 5:146,322,756...146,323,666 		JBrowse link
G LOC100362384 ferritin light chain 1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr13:83,117,280...83,118,226
Ensembl chr13:83,117,297...83,118,233
Ensembl chr 2:83,117,297...83,118,233 		JBrowse link
G LOC102549852 ferritin light chain 1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 1:143,810,386...143,811,096
Ensembl chr 1:143,810,583...143,810,987
Ensembl chr10:143,810,583...143,810,987 		JBrowse link
G LOC120102993 ferritin light chain 1-like located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr 5:144,647,550...144,648,460
Ensembl chr 5:144,647,541...144,648,477 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 located_in ISO
IEA 		(PMID:19640926)
GO_REF:0000107 		RGD
Ensembl		 PMID:19640926 GO_REF:0000107 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha located_in ISO
IEA 		(PMID:25327288)
GO_REF:0000107 		RGD
Ensembl		 PMID:25327288 GO_REF:0000107 NCBI chr 3:143,783,024...143,784,670
Ensembl chr 3:143,783,024...143,784,670 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta located_in ISO (PMID:26284655) RGD PMID:26284655 NCBI chr19:49,665,795...49,673,655
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 located_in ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:7,389,222...7,409,564
Ensembl chr16:7,366,542...7,409,641
Ensembl chr16:7,366,542...7,409,641 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 located_in ISO
IEA 		(PMID:25327288)
GO_REF:0000107 		RGD
Ensembl		 PMID:25327288 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 located_in ISO
ISS 		(PMID:28325809)
GO_REF:0000024 		RGD
UniProt		 PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412 		JBrowse link
G Sqstm1 sequestosome 1 located_in ISO
IEA 		(PMID:19640926)
GO_REF:0000107
(PMID:26284655) 		RGD
Ensembl		 PMID:19640926 PMID:26284655 GO_REF:0000107 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
autolysosome lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gaa alpha glucosidase is_active_in ISO MGI:2148550 (PMID:9668092) RGD PMID:9668092 NCBI chr10:104,529,673...104,546,836
Ensembl chr10:104,529,747...104,546,836 		JBrowse link
autolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plekhm1 pleckstrin homology and RUN domain containing M1 located_in IEA GO_REF:0000044 UniProt GO_REF:0000044 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412 		JBrowse link
G Rab30 RAB30, member RAS oncogene family located_in ISO (PMID:26771875) RGD PMID:26771875 NCBI chr 1:146,803,719...146,898,369
Ensembl chr 1:146,803,714...146,892,181 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family located_in ISO (PMID:37821429) RGD PMID:37821429 NCBI chr 8:54,088,246...54,105,867
Ensembl chr 8:54,088,129...54,106,483 		JBrowse link
G Stx17 syntaxin 17 located_in ISS
ISO 		GO_REF:0000024
(PMID:37821429) 		UniProt
RGD		 PMID:37821429 GO_REF:0000024 NCBI chr 5:62,446,138...62,506,108
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
phagolysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 located_in ISO
IEA 		(PMID:17548643)
GO_REF:0000107 		RGD
Ensembl		 PMID:17548643 GO_REF:0000107 NCBI chr 1:194,776,559...194,789,330
Ensembl chr 1:194,770,060...194,788,801 		JBrowse link
G Pla2g5 phospholipase A2, group V located_in ISS
ISO 		GO_REF:0000024
(PMID:16407308) 		UniProt
RGD		 PMID:16407308 GO_REF:0000024 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
phagolysosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamp1 lysosomal-associated membrane protein 1 located_in IEA
ISO 		GO_REF:0000107
(PMID:23395172) 		Ensembl
RGD		 PMID:23395172 GO_REF:0000107 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883 		JBrowse link
G Mpeg1 macrophage expressed 1 is_active_in ISS
ISO 		GO_REF:0000024
(PMID:31537793) 		UniProt
RGD		 PMID:31537793 GO_REF:0000024 NCBI chr 1:209,452,176...209,456,692
Ensembl chr 1:209,452,133...209,458,855 		JBrowse link
G Slc48a1 solute carrier family 48 member 1 is_active_in ISO
IEA 		(PMID:23395172)
GO_REF:0000107 		RGD
Ensembl		 PMID:23395172 GO_REF:0000107 NCBI chr 7:128,915,136...128,923,929
Ensembl chr 7:128,915,195...128,923,024 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      cytoplasm 12301
        vacuole 679
          lytic vacuole 557
            lysosome 557
              secondary lysosome 32
                autolysosome + 27
                phagolysosome + 5
Path 2
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      organelle 14207
        membrane-bounded organelle 12758
          intracellular membrane-bounded organelle 12185
            vacuole 679
              lytic vacuole 557
                lysosome 557
                  secondary lysosome 32
                    autolysosome + 27
                    phagolysosome + 5
paths to the root