Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:primary lysosome
go back to main search page
Accession:GO:0005766 term browser browse the term
Definition:A lysosome before it has fused with a vesicle or vacuole.
Synonyms:xref: NIF_Subcellular:sao1140587416


show annotations for term's descendants           Sort by:
azurophil granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa11 annexin A11 located_in ISO (PMID:9188810) RGD PMID:9188810 NCBI chr16:1,412,373...1,457,814
Ensembl chr16:1,410,756...1,457,797 		JBrowse link
G Gns glucosamine (N-acetyl)-6-sulfatase located_in ISO
IEA		 (PMID:15595925)
GO_REF:0000107		 RGD
Ensembl		 PMID:15595925 GO_REF:0000107 NCBI chr 7:58,774,625...58,808,650
Ensembl chr 7:56,889,232...56,923,151 		JBrowse link
G Hexa hexosaminidase subunit alpha located_in ISO
IEA		 (PMID:25645918)
GO_REF:0000107		 RGD
Ensembl		 PMID:25645918 GO_REF:0000107 NCBI chr 8:59,936,526...59,961,654
Ensembl chr 8:59,936,660...59,962,013 		JBrowse link
G Hexb hexosaminidase subunit beta located_in IEA
ISO		 GO_REF:0000107
(PMID:25645918)		 Ensembl
RGD		 PMID:25645918 GO_REF:0000107 NCBI chr 2:30,218,608...30,238,771
Ensembl chr 2:28,484,012...28,504,223 		JBrowse link
G Mpo myeloperoxidase located_in ISO
IEA		 (PMID:2981589)
GO_REF:0000107		 RGD
Ensembl		 PMID:2981589 GO_REF:0000107 NCBI chr10:73,092,124...73,102,057
Ensembl chr10:72,594,661...72,604,819 		JBrowse link
G Nos1 nitric oxide synthase 1 IDA RGD PMID:16387842 RGD:1580263 NCBI chr12:44,276,011...44,456,371
Ensembl chr12:38,626,714...38,710,945 		JBrowse link
G Np4 defensin NP-4 precursor located_in ISO (PMID:2500436) RGD PMID:2500436 NCBI chr16:70,494,607...70,497,261
Ensembl chr16:70,342,529...70,497,202 		JBrowse link
G Olfm4 olfactomedin 4 NOT|located_in ISO (PMID:23922742) RGD PMID:23922742 NCBI chr15:61,790,889...61,838,773
Ensembl chr15:55,407,148...55,429,681 		JBrowse link
G Snap23 synaptosome associated protein 23 located_in ISO
IEA		 (PMID:18588921)
GO_REF:0000107		 RGD
Ensembl		 PMID:18588921 GO_REF:0000107 NCBI chr 3:127,966,184...127,999,929
Ensembl chr 3:107,514,131...107,544,320 		JBrowse link
G Stx3 syntaxin 3 located_in ISO (PMID:18588921) RGD PMID:18588921 NCBI chr 1:217,940,697...218,114,865
Ensembl chr 1:208,639,115...208,685,805 		JBrowse link
G Stx7 syntaxin 7 located_in ISO
IEA		 (PMID:20170677)
GO_REF:0000107		 RGD
Ensembl		 PMID:20170677 GO_REF:0000107 NCBI chr 1:23,016,330...23,056,579
Ensembl chr 1:21,197,075...21,237,279 		JBrowse link
G Stxbp2 syntaxin binding protein 2 located_in ISO
IEA		 (PMID:18588921)
GO_REF:0000107		 RGD
Ensembl		 PMID:18588921 GO_REF:0000107 NCBI chr12:6,487,265...6,498,351
Ensembl chr12:1,689,410...1,700,458 		JBrowse link
azurophil granule lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prss57 serine protease 57 located_in ISS
ISO		 GO_REF:0000024
(PMID:23904161)		 UniProt
RGD		 PMID:23904161 GO_REF:0000024 NCBI chr 7:9,915,667...9,922,996
Ensembl chr 7:9,917,484...9,922,922 		JBrowse link
G Prtn3 proteinase 3 located_in ISO (PMID:18462208) RGD PMID:18462208 NCBI chr 7:10,472,750...10,482,037
Ensembl chr 7:9,822,122...9,831,944 		JBrowse link
azurophil granule membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp1 vesicle-associated membrane protein 1 NOT|located_in ISO (PMID:11391393) RGD PMID:11391393 NCBI chr 4:159,698,894...159,705,582
Ensembl chr 4:158,012,663...158,019,349 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 located_in ISO (PMID:16677249) RGD PMID:16677249 NCBI chr12:21,842,206...21,958,556
Ensembl chr12:16,728,524...16,764,097 		JBrowse link
G Vamp8 vesicle-associated membrane protein 8 located_in ISO
IEA		 (PMID:16677249)
GO_REF:0000107		 RGD
Ensembl		 PMID:16677249 GO_REF:0000107 NCBI chr 4:106,000,570...106,011,081
Ensembl chr 4:104,442,393...104,452,897 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      cytoplasm 12298
        vacuole 679
          lytic vacuole 557
            lysosome 557
              primary lysosome 17
                azurophil granule + 17
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        membrane-bounded organelle 12860
          intracellular membrane-bounded organelle 12307
            vacuole 679
              lytic vacuole 557
                lysosome 557
                  primary lysosome 17
                    azurophil granule + 17
paths to the root