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ONTOLOGY REPORT - ANNOTATIONS

Term:U1 snRNP
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Accession:GO:0005685 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U1, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U1 snRNP, most of which remain associated with the U1 snRNA both while the U1 snRNP is free or assembled into a series of spliceosomal complexes.


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U1 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000063412 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033
G ENSRNOG00000064062 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104
G LOC108350623 small nuclear ribonucleoprotein F-like part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000117 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000117 NCBI chr 3:175,535,569...175,535,921
Ensembl chr 3:175,535,246...175,535,841 		JBrowse link
G LOC120098617 small nuclear ribonucleoprotein E-like part_of IEA
IBA 		GO_REF:0000104
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr19:50,361,084...50,365,643 JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like part_of IEA
IBA 		GO_REF:0000104
GO_REF:0000002
GO_REF:0000033
GO_REF:0000117 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000117 NCBI chr  X:140,709,476...140,714,599
Ensembl chr  X:140,713,993...140,714,472 		JBrowse link
G LOC120100604 small nuclear ribonucleoprotein G-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:189,089,432...189,089,827
Ensembl chr 2:189,089,560...189,089,790 		JBrowse link
G Luc7l-ps3 LUC7 pre-mRNA splicing factor like, pseudogene 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:54,449,705...54,451,673 JBrowse link
G Luc7l1 LUC7 pre-mRNA splicing factor like 1 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:15,777,837...15,811,586
Ensembl chr10:15,777,829...15,817,940 		JBrowse link
G Luc7l2 LUC7 pre-mRNA splicing factor like 2 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:68,251,435...68,314,861
Ensembl chr 4:68,271,414...68,314,837 		JBrowse link
G Luc7l3 LUC7 pre-mRNA splicing factor like 3 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:79,737,457...79,773,478
Ensembl chr10:79,736,853...79,773,429 		JBrowse link
G Prpf39 pre-mRNA processing factor 39 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:88,825,227...88,851,342
Ensembl chr 6:88,825,243...88,851,341 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:58,036,779...58,098,996
Ensembl chr 3:58,038,042...58,099,363 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:132,271,469...132,332,913
Ensembl chr 7:132,310,927...132,332,912 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 part_of IDA
IBA
ISO
IEA 		GO_REF:0000033
(PMID:21113136), (PMID:23793891), (PMID:25555158), (PMID:33677607)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:21113136 PMID:23793891 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033 GO_REF:0000107, RGD:10448962 NCBI chr 1:104,992,518...105,012,851
Ensembl chr 1:104,992,442...105,012,851 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A part_of IDA
ISO
IEA
IBA 		(PMID:25555158)
(PMID:21113136), (PMID:23793891), (PMID:33677607)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21113136 PMID:23793891 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033 GO_REF:0000107, RGD:10448962 NCBI chr 1:91,609,419...91,618,119
Ensembl chr 1:91,609,420...91,618,042 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IDA
ISS
IBA
ISO
IEA 		GO_REF:0000024
GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)
GO_REF:0000107
GO_REF:0000117 		UniProt
GO_Central
RGD
Ensembl		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:8371979 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:1601359 NCBI chr 3:137,824,870...137,832,479
Ensembl chr 3:137,824,683...137,832,515 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:150,852,814...150,862,364
Ensembl chr 3:150,852,790...150,863,428 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C part_of IDA
ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000104
GO_REF:0000033
(PMID:15312772), (PMID:15525645), (PMID:21113136), (PMID:33677607)
GO_REF:0000002
GO_REF:0000117 		UniProt
GO_Central
RGD
InterPro		 PMID:15312772 PMID:15525645 PMID:21113136 PMID:33677607 PMID:16502463 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000117, RGD:10448962 NCBI chr20:5,890,229...5,908,410
Ensembl chr20:5,890,229...5,908,410 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IDA
ISO
IEA 		(PMID:21113136), (PMID:25555158), (PMID:33677607)
GO_REF:0000107 		RGD
Ensembl		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000107, RGD:10448962 NCBI chr18:1,969,351...1,980,207
Ensembl chr18:1,969,674...1,980,207 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IDA
IBA
ISO 		GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607) 		GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr 1:87,926,030...87,929,259
Ensembl chr 1:87,926,048...87,933,339
Ensembl chr20:87,926,048...87,933,339 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IDA
IBA
ISO 		GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607) 		GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr20:13,129,555...13,145,100
Ensembl chr20:13,109,294...13,145,763 		JBrowse link
G Snrpd3l1 small nuclear ribonucleoprotein D3 polypeptide like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:12,401,818...12,402,246
Ensembl chr19:12,401,818...12,402,246 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IDA
ISO
IEA 		(PMID:21113136), (PMID:25555158), (PMID:33677607)
GO_REF:0000104 		RGD
UniProt		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000104, RGD:10448962 NCBI chr13:47,596,324...47,609,390
Ensembl chr 8:129,294,325...129,294,603
Ensembl chr13:129,294,325...129,294,603 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 part_of IBA
IEA 		GO_REF:0000033
GO_REF:0000104 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:143,118,973...143,119,454
Ensembl chr 1:143,118,984...143,119,454
Ensembl chr 8:143,118,984...143,119,454 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of IBA
ISO
IEA 		GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)
GO_REF:0000107
GO_REF:0000117 		GO_Central
RGD
Ensembl
UniProt		 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:30,017,460...30,024,162
Ensembl chr 7:30,017,460...30,024,162 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IDA
IBA
ISO 		GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607) 		GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr 4:120,369,676...120,377,263
Ensembl chr 4:120,369,685...120,377,261
Ensembl chr  X:120,369,685...120,377,261 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:97,119,542...97,119,969
Ensembl chr 1:97,119,584...97,119,966
Ensembl chr  X:97,119,584...97,119,966 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IDA
IBA
IEA 		GO_REF:0000033
GO_REF:0000117 		GO_Central
UniProt
RGD		 PMID:8371979 GO_REF:0000033 GO_REF:0000117, RGD:1601359 NCBI chr 1:120,316,846...120,338,919
Ensembl chr 1:120,315,556...120,323,924 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19485
    protein-containing complex 6265
      nuclear protein-containing complex 1368
        small nuclear ribonucleoprotein complex 80
          spliceosomal snRNP complex 73
            U1 snRNP 28
Path 2
Term Annotations click to browse term
  cellular_component 19485
    cellular anatomical structure 19353
      intracellular anatomical structure 14908
        intracellular organelle 13261
          intracellular membrane-bounded organelle 11899
            nucleus 7471
              nuclear protein-containing complex 1368
                small nuclear ribonucleoprotein complex 80
                  spliceosomal snRNP complex 73
                    U1 snRNP 28
paths to the root