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ONTOLOGY REPORT - ANNOTATIONS

Term:U1 snRNP
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Accession:GO:0005685 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U1, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U1 snRNP, most of which remain associated with the U1 snRNA both while the U1 snRNP is free or assembled into a series of spliceosomal complexes.


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U1 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G ENSRNOG00000064062 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G ENSRNOG00000066758 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr  X:14,995,412...14,996,454 JBrowse link
G LOC120099250 U1 small nuclear ribonucleoprotein C-like part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr  X:135,673,708...135,678,865
Ensembl chr  X:135,677,760...135,678,704 		JBrowse link
G Luc7l LUC7-like part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:15,273,340...15,307,131
Ensembl chr10:15,273,348...15,303,112 		JBrowse link
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:67,287,593...67,347,986
Ensembl chr 4:67,287,640...67,347,964 		JBrowse link
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:79,240,050...79,276,555
Ensembl chr10:79,240,563...79,276,538 		JBrowse link
G Prpf39 pre-mRNA processing factor 39 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:83,088,981...83,113,826
Ensembl chr 6:83,088,986...83,113,825 		JBrowse link
G Prpf40a pre-mRNA processing factor 40 homolog A part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:37,625,585...37,689,859
Ensembl chr 3:37,627,690...37,690,886 		JBrowse link
G Prpf40b pre-mRNA processing factor 40 homolog B part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:130,392,611...130,454,053
Ensembl chr 7:130,432,112...130,454,052 		JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:23793891), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:23793891 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr 1:95,856,038...95,876,434
Ensembl chr 1:95,856,036...95,876,392 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A part_of IDA
ISO
IBA		 (PMID:25555158)
GO_REF:0000033
(PMID:21113136), (PMID:23793891), (PMID:33677607)		 RGD
GO_Central		 PMID:21113136 PMID:23793891 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of IDA
ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 UniProt
GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:8371979 GO_REF:0000024 GO_REF:0000033, RGD:1601359 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:130,399,239...130,408,821
Ensembl chr 3:130,399,248...130,408,812 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C part_of IDA
ISS
IEA
IBA
ISO		 GO_REF:0000024
GO_REF:0000104
GO_REF:0000033
(PMID:15312772), (PMID:15525645), (PMID:21113136), (PMID:33677607)		 UniProt
GO_Central
RGD		 PMID:15312772 PMID:15525645 PMID:21113136 PMID:33677607 PMID:16502463 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104, RGD:10448962 NCBI chr20:5,888,453...5,906,638
Ensembl chr20:5,888,453...5,906,638
Ensembl chr10:5,888,453...5,906,638 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351
Ensembl chr20:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IDA
IBA
ISO		 GO_REF:0000033
(PMID:21113136), (PMID:25555158), (PMID:33677607)		 GO_Central
RGD		 PMID:21113136 PMID:25555158 PMID:33677607 PMID:16502463 GO_REF:0000033, RGD:10448962 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826
Ensembl chr  X:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:8371979 GO_REF:0000033, RGD:1601359 NCBI chr 1:111,101,327...111,123,400
Ensembl chr 1:111,101,329...111,123,634 		JBrowse link
G Zfp341 zinc finger protein 341 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,122,699...143,156,250
Ensembl chr 3:143,119,093...143,156,249 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20833
    protein-containing complex 6558
      nuclear protein-containing complex 1275
        small nuclear ribonucleoprotein complex 84
          spliceosomal snRNP complex 76
            U1 snRNP 25
Path 2
Term Annotations click to browse term
  cellular_component 20833
    cellular anatomical structure 20633
      intracellular anatomical structure 15189
        intracellular organelle 13569
          intracellular membrane-bounded organelle 12009
            nucleus 7454
              nuclear protein-containing complex 1275
                small nuclear ribonucleoprotein complex 84
                  spliceosomal snRNP complex 76
                    U1 snRNP 25
paths to the root