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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded RNA binding
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Accession:GO:0003727 term browser browse the term
Definition:Binding to single-stranded RNA.
Synonyms:exact_synonym: ssRNA binding
 alt_id: GO:0003728


show annotations for term's descendants           Sort by:
single-stranded RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11871661) 		UniProt
Ensembl
RGD		 PMID:11871661 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G AABR07004232.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:18,937,773...18,938,846 JBrowse link
G AABR07008681.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:60,024,969...60,032,699 JBrowse link
G AABR07011733.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:86,949,188...86,950,375 JBrowse link
G AABR07013425.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:197,901,214...197,902,287 JBrowse link
G AABR07018132.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr15:62,422,113...62,423,186 JBrowse link
G AABR07018556.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr15:62,426,733...62,427,809 JBrowse link
G AABR07043347.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr17:3,606,222...3,607,319 JBrowse link
G AABR07064590.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 6:265,208...266,329 JBrowse link
G Ago1 argonaute RISC component 1 enables ISO
IEA
IBA 		(PMID:19966796)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19966796 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:138,722,111...138,757,118
Ensembl chr 5:138,722,111...138,773,546 		JBrowse link
G Ago2 argonaute RISC catalytic component 2 enables ISO
IBA
IEA 		(PMID:19966796)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:19966796 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:106,907,209...106,994,124
Ensembl chr 7:105,029,120...105,104,974 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 enables ISO
IEA
IBA 		(PMID:19966796)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19966796 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Ago4 argonaute RISC component 4 enables ISO
IEA
IBA 		(PMID:19966796)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19966796 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:138,780,446...138,825,898
Ensembl chr 5:138,783,069...138,825,632 		JBrowse link
G Anxa1 annexin A1 contributes_to IDA RGD PMID:10548514 RGD:2306916 NCBI chr 1:227,287,713...227,306,739
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Aqr aquarius intron-binding spliceosomal factor enables ISO
IEA 		(PMID:25599396)
GO_REF:0000107 		RGD
Ensembl		 PMID:25599396 GO_REF:0000107 NCBI chr 3:100,874,987...100,945,026
Ensembl chr 3:100,874,987...100,945,044 		JBrowse link
G Cbx4 chromobox 4 enables ISO
IEA 		(PMID:16537902)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537902 GO_REF:0000107 NCBI chr10:104,835,685...104,841,727
Ensembl chr10:104,336,876...104,356,706 		JBrowse link
G Cbx6 chromobox 6 enables ISO
IEA 		(PMID:16537902)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537902 GO_REF:0000107 NCBI chr 7:111,372,979...111,383,026
Ensembl chr 7:111,372,980...111,383,091 		JBrowse link
G Cbx7 chromobox 7 enables ISO (PMID:16537902) RGD PMID:16537902 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Cbx8 chromobox 8 enables ISO
IEA 		(PMID:16537902)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537902 GO_REF:0000107 NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024 		JBrowse link
G Cnbp CCHC-type zinc finger, nucleic acid binding protein enables IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:7788528 GO_REF:0000033, RGD:632384 NCBI chr 4:120,302,768...120,311,694
Ensembl chr 4:120,302,771...120,311,637 		JBrowse link
G Ddx11 DEAD/H-box helicase 11 enables ISO (PMID:27477908) RGD PMID:27477908 NCBI chr 9:113,204,886...113,309,692
Ensembl chr 9:105,833,504...105,862,550 		JBrowse link
G Ddx60 DEXD/H-box helicase 60 enables ISO
IBA 		(PMID:21791617)
GO_REF:0000033 		RGD
GO_Central		 PMID:21791617 GO_REF:0000033 NCBI chr16:28,077,000...28,197,903
Ensembl chr16:28,076,999...28,179,526 		JBrowse link
G Ddx60l1 DEXD/H-box helicase 60 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:27,841,143...27,950,765
Ensembl chr16:27,840,998...27,951,324 		JBrowse link
G Dhx58 DEXH-box helicase 58 enables ISO
IEA
IBA 		(PMID:18411269)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18411269 GO_REF:0000033 GO_REF:0000107 NCBI chr10:85,620,352...85,631,776
Ensembl chr10:85,620,357...85,631,525 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO
IEA 		(PMID:10198287), (PMID:9111062)
GO_REF:0000107 		RGD
Ensembl		 PMID:9111062 PMID:10198287 GO_REF:0000107 NCBI chr13:68,152,813...68,189,580
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Dlx2 distal-less homeobox 2 enables IEA
ISO 		GO_REF:0000107
EMBL:AK038694 (PMID:16705037) 		Ensembl
RGD		 PMID:16705037 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Endov endonuclease V enables ISO
IEA
IBA 		(PMID:23912683), (PMID:23912718)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23912683 PMID:23912718 GO_REF:0000033 GO_REF:0000107 NCBI chr10:104,760,059...104,777,732
Ensembl chr10:104,760,137...104,775,969 		JBrowse link
G ENSRNOG00000062952 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr15:68,158,507...68,159,715 JBrowse link
G ENSRNOG00000063041 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr18:64,505,761...64,506,834 JBrowse link
G ENSRNOG00000063101 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:54,943,933...54,974,589 JBrowse link
G ENSRNOG00000063117 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr16:22,612,682...22,613,869 JBrowse link
G ENSRNOG00000063521 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:32,242,694...32,243,836 JBrowse link
G ENSRNOG00000063582 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr14:22,414,838...22,415,965 JBrowse link
G ENSRNOG00000064579 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr17:2,725,722...2,726,777 JBrowse link
G ENSRNOG00000064845 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:180,988,287...180,989,360 JBrowse link
G ENSRNOG00000064887 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:149,498,772...149,499,899 JBrowse link
G ENSRNOG00000065408 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr14:96,067,533...96,074,122 JBrowse link
G ENSRNOG00000067098 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr11:72,881,000...72,882,073 JBrowse link
G ENSRNOG00000067427 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr17:42,143,899...42,144,972 JBrowse link
G ENSRNOG00000067560 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr17:52,054,033...52,074,893 JBrowse link
G ENSRNOG00000067965 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:46,530,630...46,531,703 JBrowse link
G ENSRNOG00000068795 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:102,526,287...102,527,474 JBrowse link
G ENSRNOG00000069050 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr10:10,307,774...10,308,847 JBrowse link
G ENSRNOG00000069130 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:23,585,644...23,607,712 JBrowse link
G ENSRNOG00000069224 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:122,562,810...122,563,931 JBrowse link
G ENSRNOG00000070800 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 6:4,682,416...4,750,837 JBrowse link
G Exosc10 exosome component 10 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Fbxo15 F-box protein 15 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:78,319,577...78,634,695
Ensembl chr18:78,319,534...78,390,765 		JBrowse link
G Hmgb1 high mobility group box 1 enables ISO (PMID:19890330) RGD PMID:19890330 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IDA RGD PMID:7727389 RGD:10045982 NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F enables ISO
ISS 		(PMID:20526337)
GO_REF:0000024 		RGD
UniProt		 PMID:20526337 GO_REF:0000024 NCBI chr 4:151,083,262...151,104,464
Ensembl chr 4:151,083,062...151,109,038 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA 		(PMID:1628625), (PMID:8068679)
GO_REF:0000107 		RGD
Ensembl		 PMID:1628625 PMID:8068679 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Ifih1 interferon induced with helicase C domain 1 enables ISO
IEA
IBA 		(PMID:19656871)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19656871 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:67,635,924...67,683,968
Ensembl chr 3:47,227,364...47,275,456 		JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO
IEA
ISS 		(PMID:22965130)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:22965130 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:209,935,922...209,958,570
Ensembl chr 1:200,506,338...200,529,514 		JBrowse link
G Ilf3 interleukin enhancer binding factor 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:19,922,409...19,960,495
Ensembl chr 8:19,922,460...19,960,350 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20679243), (PMID:29176719) 		UniProt
Ensembl
RGD		 PMID:20679243 PMID:29176719 GO_REF:0000024 GO_REF:0000107 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 IDA RGD PMID:11118435 RGD:632715 NCBI chr 7:100,837,707...100,995,644
Ensembl chr 7:100,837,934...100,988,460 		JBrowse link
G L1td1 LINE-1 type transposase domain containing 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:113,373,193...113,386,088
Ensembl chr 5:113,379,870...113,385,730 		JBrowse link
G Lactb2 lactamase, beta 2 enables ISO
IEA
IBA
ISS 		(PMID:26826708)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:26826708 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:5,569,080...5,591,843
Ensembl chr 5:5,569,067...5,596,429 		JBrowse link
G LOC134478918 probable ATP-dependent RNA helicase DDX60 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Lonp1 lon peptidase 1, mitochondrial enables ISO
IEA 		(PMID:14739292)
GO_REF:0000107 		RGD
Ensembl		 PMID:14739292 GO_REF:0000107 NCBI chr 9:1,447,444...1,459,771
Ensembl chr 9:1,447,447...1,459,771 		JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor enables ISO
IEA 		(PMID:22745163)
GO_REF:0000107 		RGD
Ensembl		 PMID:22745163 GO_REF:0000107 NCBI chr 1:86,964,800...87,009,325
Ensembl chr 1:86,964,828...87,009,276 		JBrowse link
G Mir181c microRNA 181c enables ISO (PMID:28379604) RGD PMID:28379604 NCBI chr19:23,983,523...23,983,628
Ensembl chr19:23,983,523...23,983,628 		JBrowse link
G Mir9-3 microRNA 9-3 enables ISO (PMID:23985560) RGD PMID:23985560 NCBI chr 1:133,440,049...133,440,138 JBrowse link
G Msi1 musashi RNA-binding protein 1 enables ISO
IEA 		(PMID:11588182)
GO_REF:0000107 		RGD
Ensembl		 PMID:11588182 GO_REF:0000107 NCBI chr12:41,158,301...41,251,134
Ensembl chr12:41,158,599...41,191,076 		JBrowse link
G Msi2 musashi RNA-binding protein 2 enables ISO
IEA 		(PMID:11588182)
GO_REF:0000107 		RGD
Ensembl		 PMID:11588182 GO_REF:0000107 NCBI chr10:73,143,760...73,510,566
Ensembl chr10:73,147,380...73,510,157 		JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 enables ISO
IEA 		(PMID:11578866), (PMID:12062093)
GO_REF:0000107 		RGD
Ensembl		 PMID:11578866 PMID:12062093 GO_REF:0000107 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580 		JBrowse link
G Polr2g RNA polymerase II subunit G enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:215,118,278...215,125,389
Ensembl chr 1:205,689,160...205,692,686 		JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 IDA MIAT RGD PMID:35641779 RGD:329845872 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691 		JBrowse link
G Rbm10 RNA binding motif protein 10 IDA RGD PMID:8760884 RGD:1299361 NCBI chr  X:4,093,914...4,126,060
Ensembl chr  X:1,540,398...1,572,575 		JBrowse link
G Rbm11 RNA binding motif protein 11 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:14,234,851...14,244,092
Ensembl chr11:14,234,890...14,244,090 		JBrowse link
G Rbm7 RNA binding motif protein 7 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:48,831,894...48,838,399
Ensembl chr 8:48,831,894...48,838,411 		JBrowse link
G Rbmx RNA binding motif protein, X-linked IDA RGD PMID:19282290 RGD:2316827 NCBI chr  X:135,305,237...135,314,806
Ensembl chr  X:135,305,325...135,314,743 		JBrowse link
G Rig1 RNA sensor RIG-1 enables ISO
IEA
IBA 		(PMID:19211564)
GO_REF:0000107
GO_REF:0000033
(PMID:22314235) 		RGD
Ensembl
GO_Central		 PMID:19211564 PMID:22314235 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:60,117,398...60,165,995
Ensembl chr 5:55,321,235...55,370,819 		JBrowse link
G Rpl19l4 ribosomal protein L19 like 4 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:16,880,899...16,898,782
Ensembl chr 5:16,880,899...16,896,524 		JBrowse link
G Slx4ip SLX4 interacting protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:124,220,215...124,396,797
Ensembl chr 3:124,221,198...124,396,797 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C enables ISO (PMID:8798632) RGD PMID:8798632 NCBI chr20:5,890,229...5,908,410
Ensembl chr20:5,888,453...5,906,638
Ensembl chr10:5,888,453...5,906,638 		JBrowse link
G Strbp spermatid perinuclear RNA binding protein enables IBA
ISO 		GO_REF:0000033
(PMID:7744952) 		GO_Central
RGD		 PMID:7744952 GO_REF:0000033 NCBI chr 3:21,328,310...21,467,753
Ensembl chr 3:21,337,855...21,414,949 		JBrowse link
G Thra thyroid hormone receptor alpha IDA RGD PMID:16356627 RGD:1580096 NCBI chr10:84,198,141...84,225,659
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Thra_v2 thyroid hormone receptor alpha, variant 2 IDA RGD PMID:16356627 RGD:1580096
G Tlr7 toll-like receptor 7 enables ISO
IEA 		(PMID:35477763)
GO_REF:0000107
(PMID:14976262) 		RGD
Ensembl		 PMID:14976262 PMID:35477763 GO_REF:0000107 NCBI chr  X:27,027,380...27,054,309
Ensembl chr  X:27,027,425...27,054,754 		JBrowse link
G Tlr8 toll-like receptor 8 enables ISO (PMID:14976262), (PMID:24942581) RGD PMID:14976262 PMID:24942581 NCBI chr  X:27,091,780...27,116,092
Ensembl chr  X:27,091,778...27,116,549 		JBrowse link
G Vom2r52l1 vomeronasal 2 receptor, 52 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:12,194,767...12,207,125
Ensembl chr18:12,194,767...12,207,125 		JBrowse link
G Zcchc13 zinc finger CCHC-type containing 13 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,643,568...68,644,671
Ensembl chr  X:68,643,549...68,665,131 		JBrowse link
G Zfr zinc finger RNA binding protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:61,137,611...61,200,322
Ensembl chr 2:61,137,611...61,200,322 		JBrowse link
G Zfr2 zinc finger RNA binding protein 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,466,768...8,485,593
Ensembl chr 7:8,466,753...8,485,538 		JBrowse link
poly(A) binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx1 DEAD-box helicase 1 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12183465) 		UniProt
Ensembl
RGD		 PMID:12183465 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked enables ISO (PMID:18596238) RGD PMID:18596238 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 enables ISO
IEA 		(PMID:10523622)
GO_REF:0000107 		RGD
Ensembl		 PMID:10523622 GO_REF:0000107 NCBI chr10:105,047,567...105,057,561
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12034726) 		UniProt
Ensembl
RGD		 PMID:12034726 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:130,285,418...130,429,106
Ensembl chr 5:125,056,848...125,200,446 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISO
IEA 		(PMID:10496225)
GO_REF:0000107 		RGD
Ensembl		 PMID:10496225 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like enables ISO (PMID:9538234) RGD PMID:9538234 NCBI chr14:9,557,430...9,563,659
Ensembl chr14:9,557,425...9,562,506 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA 		(PMID:8174554)
GO_REF:0000107 		RGD
Ensembl		 PMID:8174554 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 enables ISO
IEA
IBA 		(PMID:21984414)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:21984414 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:147,337,048...147,374,604
Ensembl chr 5:142,063,570...142,089,180 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 enables IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:10077576) 		GO_Central
Ensembl
RGD		 PMID:10077576 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:34,447,023...34,953,684
Ensembl chr 9:34,447,056...34,915,530 		JBrowse link
G Larp4 La ribonucleoprotein 4 enables ISO
IEA 		(PMID:21098120)
GO_REF:0000107 		RGD
Ensembl		 PMID:21098120 GO_REF:0000107 NCBI chr 7:131,104,470...131,152,692
Ensembl chr 7:131,101,564...131,150,811 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 enables ISS
IBA
ISO 		GO_REF:0000024
GO_REF:0000033
(PMID:16804161), (PMID:21984414) 		UniProt
GO_Central
RGD		 PMID:16804161 PMID:21984414 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997 		JBrowse link
G Pabpc1l2a poly(A) binding protein, cytoplasmic 1-like 2A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,023,845...68,026,508 JBrowse link
G Pabpc1l2b poly(A) binding protein cytoplasmic 1 like 2B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Pabpc2 poly(A) binding protein, cytoplasmic 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:31,654,218...31,656,486
Ensembl chr18:31,654,218...31,656,286 		JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 enables ISO
IBA 		(PMID:8524242)
GO_REF:0000033 		RGD
GO_Central		 PMID:8524242 GO_REF:0000033 NCBI chr 5:135,563,142...135,578,985
Ensembl chr 5:135,563,562...135,578,979 		JBrowse link
G Pabpc4-ps1 poly(A) binding protein, cytoplasmic 4, pseudogene 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:3,116,136...3,119,449
Ensembl chr12:3,116,721...3,118,626 		JBrowse link
G Pabpc4l poly(A) binding protein, cytoplasmic 4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:129,807,755...129,809,745
Ensembl chr 2:129,807,755...129,809,745 		JBrowse link
G Pabpc5 poly A binding protein, cytoplasmic 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:85,637,763...85,641,235
Ensembl chr  X:85,638,574...85,639,722 		JBrowse link
G Pabpc6 poly(A) binding protein, cytoplasmic 6 enables ISO
IBA 		(PMID:11328870)
GO_REF:0000033 		RGD
GO_Central		 PMID:11328870 GO_REF:0000033 NCBI chr 1:51,045,264...51,048,340
Ensembl chr 1:51,045,233...51,048,340 		JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:28,368,100...28,372,712
Ensembl chr15:28,368,100...28,372,703 		JBrowse link
G Pabpn1l PABPN1 like enables ISO
IEA
IBA 		(PMID:32558204)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:32558204 GO_REF:0000033 GO_REF:0000107 NCBI chr19:50,669,965...50,673,409
Ensembl chr19:50,669,967...50,673,366 		JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:7,476,707...7,595,384
Ensembl chr12:7,476,697...7,599,204 		JBrowse link
G Ppie peptidylprolyl isomerase E enables ISO (PMID:18258190) RGD PMID:18258190 NCBI chr 5:135,406,172...135,419,332
Ensembl chr 5:135,406,176...135,419,235 		JBrowse link
G Rbms1 RNA binding motif, single stranded interacting protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:45,195,828...45,420,406
Ensembl chr 3:45,197,972...45,420,376 		JBrowse link
G Rbms2 RNA binding motif, single stranded interacting protein 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:560,787...603,881
Ensembl chr 7:560,648...600,232 		JBrowse link
G Rbms3 RNA binding motif, single stranded interacting protein 3 enables ISO
IEA
IBA 		(PMID:10675610)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10675610 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:116,305,227...117,625,730
Ensembl chr 8:116,309,882...117,625,423 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein enables ISO (PMID:10734137) RGD PMID:10734137 NCBI chr 8:89,402,487...89,435,517
Ensembl chr 8:89,402,866...89,435,515 		JBrowse link
G Zc3h14 zinc finger CCCH type containing 14 enables IEA
ISO
ISS
IBA 		GO_REF:0000104
GO_REF:0000002
(PMID:28666327)
GO_REF:0000024
GO_REF:0000033 		UniProt
InterPro
RGD
GO_Central		 PMID:28666327 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:118,006,420...118,044,480
Ensembl chr 6:118,006,458...118,044,105 		JBrowse link
poly(C) RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA 		(PMID:8174554)
GO_REF:0000107 		RGD
Ensembl		 PMID:8174554 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 NOT|enables ISO (PMID:8524242) RGD PMID:8524242 NCBI chr 5:135,563,142...135,578,985
Ensembl chr 5:135,563,562...135,578,979 		JBrowse link
poly(G) binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn1 ataxin 1 enables ISS
ISO 		GO_REF:0000024
(PMID:11136710) 		UniProt
RGD		 PMID:11136710 GO_REF:0000024 NCBI chr17:18,737,491...19,142,360
Ensembl chr17:18,737,533...19,142,360 		JBrowse link
G Dazap1 DAZ associated protein 1 enables ISO
IEA 		(PMID:10857750)
GO_REF:0000107 		RGD
Ensembl		 PMID:10857750 GO_REF:0000107 NCBI chr 7:9,423,673...9,448,116
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:24204304)
(PMID:10496225), (PMID:7688265)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:7688265 PMID:10496225 PMID:24204304 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like enables ISO (PMID:9538234) RGD PMID:9538234 NCBI chr14:9,557,430...9,563,659
Ensembl chr14:9,557,425...9,562,506 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables IDA
ISO
IEA 		(PMID:8174554)
GO_REF:0000107 		RGD
Ensembl		 PMID:8174554 PMID:20554522 GO_REF:0000107, RGD:10058983 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Mcrs1 microspherule protein 1 enables ISO
ISS
IEA 		(PMID:16571602)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:16571602 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor enables ISO
IEA 		(PMID:20826699)
GO_REF:0000107 		RGD
Ensembl		 PMID:20826699 GO_REF:0000107 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 enables ISO
IEA 		(PMID:18083836)
GO_REF:0000107 		RGD
Ensembl		 PMID:18083836 GO_REF:0000107 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
poly(U) RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn1 ataxin 1 enables ISO
ISS 		(PMID:11136710)
GO_REF:0000024 		RGD
UniProt		 PMID:11136710 GO_REF:0000024 NCBI chr17:18,737,491...19,142,360
Ensembl chr17:18,737,533...19,142,360 		JBrowse link
G Cirbp cold inducible RNA binding protein enables ISO (PMID:9151692) RGD PMID:9151692 NCBI chr 7:10,184,515...10,189,623
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Dazap1 DAZ associated protein 1 enables ISO
IEA 		(PMID:10857750)
GO_REF:0000107 		RGD
Ensembl		 PMID:10857750 GO_REF:0000107 NCBI chr 7:9,423,673...9,448,116
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 enables ISO
IEA 		(PMID:24141620)
GO_REF:0000107
(PMID:25119025) 		RGD
Ensembl		 PMID:24141620 PMID:25119025 GO_REF:0000107 NCBI chr 9:87,355,409...87,736,616
Ensembl chr 9:87,356,457...87,736,616 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10496225), (PMID:7688265), (PMID:8156595)
(PMID:24204304) 		UniProt
Ensembl
RGD		 PMID:7688265 PMID:8156595 PMID:10496225 PMID:24204304 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C enables ISO (PMID:16010978) RGD PMID:16010978 NCBI chr15:27,253,098...27,282,779
Ensembl chr15:24,779,450...24,809,183 		JBrowse link
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 enables ISO
IEA 		(PMID:21984414)
GO_REF:0000107 		RGD
Ensembl		 PMID:21984414 GO_REF:0000107 NCBI chr 5:147,337,048...147,374,604
Ensembl chr 5:142,063,570...142,089,180 		JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 enables ISO
IEA 		(PMID:10077576)
GO_REF:0000107 		RGD
Ensembl		 PMID:10077576 GO_REF:0000107 NCBI chr 9:34,447,023...34,953,684
Ensembl chr 9:34,447,056...34,915,530 		JBrowse link
G Mcrs1 microspherule protein 1 enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16571602) 		UniProt
Ensembl
RGD		 PMID:16571602 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685 		JBrowse link
G Msi1 musashi RNA-binding protein 1 enables IEA
ISO 		GO_REF:0000107
(PMID:11588182) 		Ensembl
RGD		 PMID:11588182 GO_REF:0000107 NCBI chr12:41,158,301...41,251,134
Ensembl chr12:41,158,599...41,191,076 		JBrowse link
G Msi2 musashi RNA-binding protein 2 enables ISO
IEA 		(PMID:11588182)
GO_REF:0000107 		RGD
Ensembl		 PMID:11588182 GO_REF:0000107 NCBI chr10:73,143,760...73,510,566
Ensembl chr10:73,147,380...73,510,157 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 enables ISO
IBA 		(PMID:21984414)
GO_REF:0000033 		RGD
GO_Central		 PMID:21984414 GO_REF:0000033 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744 		JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997 		JBrowse link
G Pabpc1l2a poly(A) binding protein, cytoplasmic 1-like 2A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:68,023,845...68,026,508 JBrowse link
G Pabpc1l2b poly(A) binding protein cytoplasmic 1 like 2B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Pabpc2 poly(A) binding protein, cytoplasmic 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:31,654,218...31,656,486
Ensembl chr18:31,654,218...31,656,286 		JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 enables ISO
IBA 		(PMID:8524242)
GO_REF:0000033 		RGD
GO_Central		 PMID:8524242 GO_REF:0000033 NCBI chr 5:135,563,142...135,578,985
Ensembl chr 5:135,563,562...135,578,979 		JBrowse link
G Pabpc4-ps1 poly(A) binding protein, cytoplasmic 4, pseudogene 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:3,116,136...3,119,449
Ensembl chr12:3,116,721...3,118,626 		JBrowse link
G Pabpc4l poly(A) binding protein, cytoplasmic 4-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:129,807,755...129,809,745
Ensembl chr 2:129,807,755...129,809,745 		JBrowse link
G Pabpc5 poly A binding protein, cytoplasmic 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:85,637,763...85,641,235
Ensembl chr  X:85,638,574...85,639,722 		JBrowse link
G Pabpc6 poly(A) binding protein, cytoplasmic 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:51,045,264...51,048,340
Ensembl chr 1:51,045,233...51,048,340 		JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor enables ISO
IEA 		(PMID:20826699)
GO_REF:0000107 		RGD
Ensembl		 PMID:20826699 GO_REF:0000107 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857 		JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 enables ISO
IEA 		(PMID:18083836)
GO_REF:0000107 		RGD
Ensembl		 PMID:18083836 GO_REF:0000107 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696 		JBrowse link
G Rbm11 RNA binding motif protein 11 enables ISO (PMID:21984414) RGD PMID:21984414 NCBI chr11:14,234,851...14,244,092
Ensembl chr11:14,234,890...14,244,090 		JBrowse link
G Rbms1 RNA binding motif, single stranded interacting protein 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:45,195,828...45,420,406
Ensembl chr 3:45,197,972...45,420,376 		JBrowse link
G Rbms2 RNA binding motif, single stranded interacting protein 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:560,787...603,881
Ensembl chr 7:560,648...600,232 		JBrowse link
G Rbms3 RNA binding motif, single stranded interacting protein 3 enables ISO
IEA
IBA 		(PMID:10675610)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10675610 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:116,305,227...117,625,730
Ensembl chr 8:116,309,882...117,625,423 		JBrowse link
G Rps7 ribosomal protein S7 IDA RGD PMID:511842 RGD:11040684 NCBI chr 6:45,266,200...45,271,064
Ensembl chr 6:45,223,980...45,271,145
Ensembl chr 5:45,223,980...45,271,145 		JBrowse link
G Ssb small RNA binding exonuclease protection factor La enables ISO ChEBI:8758 (PMID:12842046), (PMID:15004549), (PMID:16387655) RGD PMID:12842046 PMID:15004549 PMID:16387655 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203 		JBrowse link
poly-pyrimidine tract binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb2 cytoplasmic polyadenylation element binding protein 2 enables ISO (PMID:12672660) RGD PMID:12672660 NCBI chr14:71,999,958...72,056,012
Ensembl chr14:67,787,507...67,840,743 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 enables ISO (PMID:21245044) RGD PMID:21245044 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G U2af2 U2 small nuclear RNA auxiliary factor 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:68,760,911...68,779,730
Ensembl chr 1:68,760,924...68,778,492 		JBrowse link
RNA strand annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx3x DEAD-box helicase 3, X-linked enables ISO (PMID:27546789) RGD PMID:27546789 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Eif4h eukaryotic translation initiation factor 4H enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:27,719,527...27,736,350
Ensembl chr12:22,082,835...22,099,876 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 enables ISO
IEA
ISS 		(PMID:17057366)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:17057366 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:152,284,857...152,322,686
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 enables ISS
ISO 		GO_REF:0000024
(PMID:17057366) 		UniProt
RGD		 PMID:17057366 GO_REF:0000024 NCBI chr 2:118,812,287...118,865,813
Ensembl chr 2:116,884,248...116,937,590 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IDA RGD PMID:1703006 RGD:10045979 NCBI chr 7:136,253,633...136,260,085
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
RNA strand-exchange activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4h eukaryotic translation initiation factor 4H enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:27,719,527...27,736,350
Ensembl chr12:22,082,835...22,099,876 		JBrowse link
steroid receptor RNA activator RNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 enables ISO
IEA
ISS 		(PMID:24722331)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:24722331 GO_REF:0000024 GO_REF:0000107 NCBI chr12:45,880,364...45,889,196
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Sra1 steroid receptor RNA activator 1 NOT|enables ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24486609), (PMID:24486611)
(PMID:20855289) 		UniProt
Ensembl
RGD		 PMID:20855289 PMID:24486609 PMID:24486611 GO_REF:0000024 GO_REF:0000107 NCBI chr18:28,269,192...28,273,023
Ensembl chr18:28,269,311...28,272,538 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21054
    binding 18050
      nucleic acid binding 3928
        RNA binding 1645
          single-stranded RNA binding 131
            RNA strand annealing activity 5
            RNA strand-exchange activity 1
            poly-purine tract binding + 34
            poly-pyrimidine tract binding + 33
            steroid receptor RNA activator RNA binding 2
paths to the root