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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699

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single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor enables ISO (PMID:10786854) MGI PMID:10786854 NCBI chrNW_004936594:5,398,973...5,402,846 JBrowse link
G Anxa1 annexin A1 contributes_to ISO RGD PMID:10548514 PMID:20655937 RGD:2306916 RGD:7421590 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413 		JBrowse link
G Aptx aprataxin enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:1,569,610...1,582,103
Ensembl chrNW_004936524:1,570,627...1,576,329 		JBrowse link
G Bivm basic, immunoglobulin-like variable motif containing enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:8,237,680...8,273,335
Ensembl chrNW_004936472:8,239,064...8,267,493 		JBrowse link
G Blm BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brca2 BRCA2 DNA repair associated enables ISO (PMID:20729832) RGD
UniProt		 PMID:12228710 PMID:20729832 RGD:632363 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Cdc45 cell division cycle 45 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:3,420,110...3,452,419
Ensembl chrNW_004936619:3,420,191...3,452,436 		JBrowse link
G Cnbp CCHC-type zinc finger nucleic acid binding protein ISO RGD PMID:7788528 RGD:632384 NCBI chrNW_004936798:207,442...210,124
Ensembl chrNW_004936798:206,217...215,354 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:3,133,849...3,168,472
Ensembl chrNW_004936562:3,133,633...3,168,480 		JBrowse link
G Ctc1 CST telomere replication complex component 1 enables IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:1,456,911...1,476,331
Ensembl chrNW_004936595:1,454,508...1,476,593 		JBrowse link
G CUNH19orf33 chromosome unknown C19orf33 homolog NOT|enables ISO (PMID:11080599) HGNC-UCL PMID:11080599 NCBI chrNW_004936801:1,077,823...1,080,317
Ensembl chrNW_004936801:1,079,594...1,080,296 		JBrowse link
G Ddx11 DEAD/H-box helicase 11 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:1,946,684...1,987,036
Ensembl chrNW_004936519:1,946,652...1,987,070 		JBrowse link
G Dhx9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease enables IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Fam111a FAM111 trypsin like peptidase A enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:3,482,649...3,488,331
Ensembl chrNW_004936581:3,480,412...3,490,195 		JBrowse link
G Fbh1 F-box DNA helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Fubp3 far upstream element binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,586,878...17,638,028
Ensembl chrNW_004936487:17,586,833...17,638,032 		JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011 		JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:11024186 RGD:2316830 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS AgBase GO_REF:0000024 NCBI chrNW_004936516:4,536,664...4,539,331
Ensembl chrNW_004936516:4,534,306...4,539,387 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:8521471) HGNC-UCL PMID:8521471 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D like enables ISO (PMID:9538234) UniProt PMID:9538234 NCBI chrNW_004936738:2,063,109...2,068,099
Ensembl chrNW_004936738:2,062,902...2,114,052 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO (PMID:1628625), (PMID:8068679), (PMID:8174554) UniProt PMID:1628625 PMID:8068679 PMID:8174554 NCBI chrNW_004936526:6,014,745...6,022,213 JBrowse link
G Hrob homologous recombination factor with OB-fold enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:619,120...633,590
Ensembl chrNW_004936541:620,754...633,499 		JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:1,406,815...1,439,764
Ensembl chrNW_004936599:1,406,802...1,439,774 		JBrowse link
G Jchain joining chain of multimeric IgA and IgM contributes_to
enables		 ISO
IEA		 (PMID:21786026) UniProtKB
Ensembl		 PMID:21786026 GO_REF:0000107 NCBI chrNW_004936598:4,061,827...4,140,895
Ensembl chrNW_004936598:4,099,201...4,109,187 		JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR enables ISO (PMID:24573677) UniProt PMID:24573677 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G Lonp1 lon peptidase 1, mitochondrial enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:3,265,344...3,287,035
Ensembl chrNW_004936588:3,265,512...3,287,181 		JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing enables ISO (PMID:12071956) MGI PMID:12071956 NCBI chrNW_004936508:7,961,079...8,068,228 JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004937104:132,692...160,965 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936798:756,350...768,600
Ensembl chrNW_004936798:756,588...765,338 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:8,530,614...8,547,971
Ensembl chrNW_004936476:8,530,688...8,547,978 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 enables
contributes_to		 IEA
ISO		 (PMID:10567526), (PMID:12207017)
(PMID:25661590)		 TreeGrafter
UniProt
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:4,705,028...4,722,320
Ensembl chrNW_004936590:4,704,972...4,722,427 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:5,016,948...5,038,494
Ensembl chrNW_004936492:5,016,323...5,038,526 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 contributes_to
enables		 ISO
IEA		 (PMID:10567526)
(PMID:12207017)
(PMID:25661590)		 UniProt
TreeGrafter
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:40,014,892...40,059,571
Ensembl chrNW_004936469:40,014,863...40,059,580 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 enables
contributes_to		 IEA
ISO		 (PMID:12207017)
(PMID:25661590)		 Ensembl
UniProt
TreeGrafter		 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936543:238,573...246,746
Ensembl chrNW_004936543:233,960...246,746 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:13,072,791...13,108,392
Ensembl chrNW_004936485:13,072,600...13,108,411 		JBrowse link
G Meiob meiosis specific with OB-fold enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936694:2,099,967...2,176,279
Ensembl chrNW_004936694:2,142,800...2,176,239 		JBrowse link
G Mlh1 mutL homolog 1 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mms22l MMS22 like, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936699:486,510...608,532
Ensembl chrNW_004936699:486,491...608,562 		JBrowse link
G Msh2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Msh3 mutS homolog 3 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chrNW_004936469:82,967...275,772
Ensembl chrNW_004936469:83,285...273,561 		JBrowse link
G Nabp1 nucleic acid binding protein 1 enables ISO (PMID:16533169) MGI PMID:16533169 NCBI chrNW_004936506:6,608,333...6,616,076 JBrowse link
G Nabp2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:632,390...638,900
Ensembl chrNW_004936646:632,121...639,868 		JBrowse link
G Neil3 nei like DNA glycosylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936516:7,739,191...7,781,735
Ensembl chrNW_004936516:7,739,157...7,782,024 		JBrowse link
G Nol12 nucleolar protein 12 ISO RGD PMID:16430885 RGD:8553573 NCBI chrNW_004936492:3,397,676...3,404,116
Ensembl chrNW_004936492:3,397,121...3,404,212 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936557:6,713,065...6,728,011
Ensembl chrNW_004936557:6,713,095...6,722,808 		JBrowse link
G Park7 Parkinsonism associated deglycase NOT|enables ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:14,280,616...14,282,148
Ensembl chrNW_004936491:14,280,695...14,281,765 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:24026233) MGI PMID:24026233 NCBI chrNW_004936512:10,732,129...10,754,885
Ensembl chrNW_004936512:10,732,151...10,756,912 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component contributes_to ISO (PMID:11809883) HGNC PMID:11809883 NCBI chrNW_004936750:439,396...468,747 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Polr2g RNA polymerase II subunit G enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936581:523,018...528,167
Ensembl chrNW_004936581:522,950...528,933 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:5,519,482...5,528,355
Ensembl chrNW_004936578:5,519,462...5,523,744 		JBrowse link
G Polr3c RNA polymerase III subunit C enables IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936867:586,798...599,069
Ensembl chrNW_004936867:586,439...600,694 		JBrowse link
G Pou4f1 POU class 4 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:2,857,017...2,859,705
Ensembl chrNW_004936511:2,857,331...2,859,277 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:1561080 RGD:10045981 NCBI chrNW_004936588:316,348...326,895
Ensembl chrNW_004936588:316,167...327,044 		JBrowse link
G Pura purine rich element binding protein A enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:9,129,024...9,134,916
Ensembl chrNW_004936531:9,129,715...9,130,515 		JBrowse link
G Purb purine rich element binding protein B enables ISO (PMID:10318844), (PMID:12933792) UniProt PMID:10318844 PMID:12933792 NCBI chrNW_004936478:19,738,252...19,747,345 JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936602:4,030,353...4,134,119
Ensembl chrNW_004936602:4,030,459...4,081,931 		JBrowse link
G Rad51 RAD51 recombinase enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 enables ISO (PMID:17996711), (PMID:9396801) UniProt PMID:9396801 PMID:17996711 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rad51b RAD51 paralog B enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:11,185,560...11,762,254
Ensembl chrNW_004936495:11,195,767...11,467,458 		JBrowse link
G Rad51d RAD51 paralog D enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:119,409...132,830
Ensembl chrNW_004936538:119,326...134,758 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936499:8,058,973...8,122,332
Ensembl chrNW_004936499:8,058,972...8,122,287 		JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:3,479,778...3,504,938
Ensembl chrNW_004936669:3,481,294...3,491,572 		JBrowse link
G Rnf138 ring finger protein 138 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936682:1,173,734...1,206,417
Ensembl chrNW_004936682:1,173,797...1,205,870 		JBrowse link
G Rpa1 replication protein A1 enables ISO
IEA		 RGD
Ensembl		 PMID:8463251 GO_REF:0000107 RGD:2307012 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 enables ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:8463251 GO_REF:0000107 GO_REF:0000118 RGD:2307012 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,770,060...4,829,562
Ensembl chrNW_004936471:4,770,063...4,829,578 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
G Shoc1 shortage in chiasmata 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:1,616,910...1,671,678
Ensembl chrNW_004936559:1,612,615...1,671,648 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936793:909,663...958,883
Ensembl chrNW_004936793:910,654...958,811 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936708:362,605...395,217
Ensembl chrNW_004936708:362,603...395,246 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:6,388,556...6,483,293
Ensembl chrNW_004936503:6,388,487...6,483,333 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:13,191,389...13,250,788
Ensembl chrNW_004936493:13,191,455...13,252,578 		JBrowse link
G Spen spen family transcriptional repressor enables ISO (PMID:10451362) MGI PMID:10451362 NCBI chrNW_004936474:3,473,892...3,535,307
Ensembl chrNW_004936474:3,473,901...3,534,628 		JBrowse link
G Sprtn SprT-like N-terminal domain enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936484:19,391,685...19,402,938
Ensembl chrNW_004936484:19,391,420...19,402,944 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936592:5,611,775...5,620,846
Ensembl chrNW_004936592:5,614,619...5,619,627 		JBrowse link
G Ssbp2 single stranded DNA binding protein 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936469:713,077...1,046,187
Ensembl chrNW_004936469:713,649...1,046,329 		JBrowse link
G Ssbp3 single stranded DNA binding protein 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936522:6,802,057...6,957,640
Ensembl chrNW_004936522:6,802,052...6,956,129 		JBrowse link
G Ssbp4 single stranded DNA binding protein 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936596:2,819,551...2,833,117
Ensembl chrNW_004936596:2,819,551...2,833,191 		JBrowse link
G Stn1 STN1 subunit of CST complex enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:2,230,754...2,266,956
Ensembl chrNW_004936600:2,230,705...2,266,968 		JBrowse link
G Sub1 SUB1 regulator of transcription enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:8,236,026...8,249,007
Ensembl chrNW_004936518:8,233,338...8,249,549 		JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:1,465,349...1,466,822
Ensembl chrNW_004936659:1,465,313...1,470,591 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:17,237,002...17,311,325
Ensembl chrNW_004936488:17,236,703...17,311,310 		JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 enables ISO (PMID:22822062) UniProt PMID:22822062 NCBI chrNW_004948563:494...1,113 JBrowse link
G Ten1 TEN1 subunit of CST complex enables IEA InterPro GO_REF:0000002 NCBI chrNW_004936594:1,139,926...1,159,611
Ensembl chrNW_004936594:1,140,003...1,159,618 		JBrowse link
G Top1 DNA topoisomerase I enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:641,451...723,323
Ensembl chrNW_004936561:641,423...723,518 		JBrowse link
G Top3a DNA topoisomerase III alpha enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,809,371...1,838,711
Ensembl chrNW_004936741:1,809,909...1,838,734 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:264,535...266,451
Ensembl chrNW_004936529:264,468...266,422 		JBrowse link
G Tsn translin contributes_to
enables		 ISO
IEA		 RGD
InterPro		 PMID:9681436 GO_REF:0000002 RGD:634412 NCBI chrNW_004936469:48,974,836...48,984,097
Ensembl chrNW_004936469:48,974,834...48,984,079 		JBrowse link
G Tsnax translin associated factor X contributes_to ISO RGD PMID:9681436 RGD:634412 NCBI chrNW_004936484:19,281,493...19,300,915
Ensembl chrNW_004936484:19,280,470...19,300,944 		JBrowse link
G Twnk twinkle mtDNA helicase enables IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:4,691,112...4,696,523
Ensembl chrNW_004936600:4,691,104...4,696,507 		JBrowse link
G Wdr48 WD repeat domain 48 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:28,307,913...28,351,727
Ensembl chrNW_004936473:28,307,875...28,354,279 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
G Ybx1 Y-box binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:24,026,459...24,047,724
Ensembl chrNW_004936474:24,026,377...24,047,724 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad54l RAD54 like enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables ISO (PMID:22705370) UniProt PMID:22705370 NCBI chrNW_004936479:2,030,788...2,110,501
Ensembl chrNW_004936479:2,030,716...2,110,661 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Tp53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,328,850...40,558,797
Ensembl chrNW_004936469:40,328,787...40,609,533 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:8127654 RGD:728600 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:8208614) MGI PMID:8208614 NCBI chrNW_004936512:10,732,129...10,754,885
Ensembl chrNW_004936512:10,732,151...10,756,912 		JBrowse link
G Pcbp3 poly(rC) binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936778:552,290...720,724
Ensembl chrNW_004936778:552,961...625,524 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chrNW_004936646:632,390...638,900
Ensembl chrNW_004936646:632,121...639,868 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chrNW_004936503:9,124,314...9,142,372
Ensembl chrNW_004936503:9,124,264...9,142,413 		JBrowse link
G Blm BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:1703006 RGD:10045979 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Recql RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936548:5,349,878...5,384,603
Ensembl chrNW_004936548:5,362,517...5,384,338 		JBrowse link
G Recql4 RecQ like helicase 4 enables ISO (PMID:19177149) GO_Central PMID:19177149 NCBI chrNW_004936470:7,755,253...7,761,705 JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:8493094) MGI PMID:8493094 NCBI chrNW_004936599:1,406,815...1,439,764
Ensembl chrNW_004936599:1,406,802...1,439,774 		JBrowse link
G Pot1 protection of telomeres 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:836,824...919,099
Ensembl chrNW_004936605:836,769...920,201 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,456,911...1,476,331
Ensembl chrNW_004936595:1,454,508...1,476,593 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:23935072) BHF-UCL PMID:23935072 NCBI chrNW_004936512:11,481,017...11,487,737 JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chrNW_004936478:2,970,261...2,980,277
Ensembl chrNW_004936478:2,970,468...2,980,381 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:632,390...638,900
Ensembl chrNW_004936646:632,121...639,868 		JBrowse link
G Pot1 protection of telomeres 1 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936605:836,824...919,099
Ensembl chrNW_004936605:836,769...920,201 		JBrowse link
G Rpa1 replication protein A1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:17694070) BHF-UCL PMID:17694070 NCBI chrNW_004936648:1,809,395...1,835,890 JBrowse link
G Terf2 telomeric repeat binding factor 2 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:19,469,501...19,498,494
Ensembl chrNW_004936475:19,468,702...19,498,793 		JBrowse link
G Terf2ip TERF2 interacting protein enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:24,312,140...24,319,492
Ensembl chrNW_004936475:24,312,101...24,320,543 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chrNW_004936470:7,927,734...7,950,805
Ensembl chrNW_004936470:7,928,095...7,933,337 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:14,280,616...14,282,148
Ensembl chrNW_004936491:14,280,695...14,281,765 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:2,970,261...2,980,277
Ensembl chrNW_004936478:2,970,468...2,980,381 		JBrowse link
G LOC101963985 heterogeneous nuclear ribonucleoproteins A2/B1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936491:10,703,450...10,742,975 JBrowse link
G LOC101970638 heterogeneous nuclear ribonucleoproteins A2/B1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936503:12,298,622...12,299,633 JBrowse link
G LOC101977351 heterogeneous nuclear ribonucleoproteins A2/B1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936859:709,392...710,609 JBrowse link
G Pot1 protection of telomeres 1 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936605:836,824...919,099
Ensembl chrNW_004936605:836,769...920,201 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Stn1 STN1 subunit of CST complex enables IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936600:2,230,754...2,266,956
Ensembl chrNW_004936600:2,230,705...2,266,968 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17128
    binding 15278
      organic cyclic compound binding 4972
        nucleic acid binding 3023
          DNA binding 1942
            single-stranded DNA binding 122
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 17
paths to the root