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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699


show annotations for term's descendants           Sort by:
single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Alyref Aly/REF export factor enables ISO (PMID:10786854) RGD PMID:10786854 NCBI chr10:105,871,424...105,875,076
Ensembl chr10:105,871,306...105,875,069 		JBrowse link
G Anxa1 annexin A1 contributes_to IDA RGD PMID:10548514 PMID:20655937 RGD:2306916, RGD:7421590 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Aptx aprataxin enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:55,798,896...55,822,963
Ensembl chr 5:55,800,248...55,822,855 		JBrowse link
G Blm BLM RecQ like helicase enables ISO (PMID:12818200), (PMID:20639533) RGD PMID:12818200 PMID:20639533 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca2 BRCA2, DNA repair associated enables IDA
IEA
ISO		 GO_REF:0000107
(PMID:20729832)		 Ensembl
RGD		 PMID:20729832 PMID:12228710 GO_REF:0000107, RGD:632363 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G C1h19orf33 similar to human chromosome 19 open reading frame 33 NOT|enables ISO (PMID:11080599) RGD PMID:11080599 NCBI chr 1:84,549,830...84,550,666
Ensembl chr 1:84,549,831...84,550,664 		JBrowse link
G Cdc45 cell division cycle 45 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619 		JBrowse link
G Cnbp CCHC-type zinc finger, nucleic acid binding protein IDA RGD PMID:7788528 RGD:632384 NCBI chr 4:120,302,768...120,311,694
Ensembl chr 4:120,302,771...120,311,637 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 enables ISO
IEA		 (PMID:12627958)
GO_REF:0000107		 RGD
Ensembl		 PMID:12627958 GO_REF:0000107 NCBI chr 3:78,374,995...78,405,001
Ensembl chr 3:78,374,995...78,404,965 		JBrowse link
G Ctc1 CST telomere replication complex component 1 enables IBA
ISO		 GO_REF:0000033
(PMID:19119139)		 GO_Central
RGD		 PMID:19119139 GO_REF:0000033 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Ddx11 DEAD/H-box helicase 11 enables ISO (PMID:9013641) RGD PMID:9013641 NCBI chr 9:105,833,234...105,862,844
Ensembl chr 9:105,833,504...105,862,550 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables ISO (PMID:20696886) RGD PMID:20696886 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:10198287), (PMID:20696886), (PMID:21957149), (PMID:9111062) RGD PMID:9111062 PMID:10198287 PMID:20696886 PMID:21957149 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit enables ISO
IBA		 (PMID:16076955), (PMID:17720715)
GO_REF:0000033		 RGD
GO_Central		 PMID:16076955 PMID:17720715 GO_REF:0000033 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit enables ISO
IBA		 (PMID:10413517)
GO_REF:0000033		 RGD
GO_Central		 PMID:10413517 GO_REF:0000033 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease enables ISO
IBA		 (PMID:12644470)
GO_REF:0000033		 RGD
GO_Central		 PMID:12644470 GO_REF:0000033 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G Fam111a FAM111 trypsin like peptidase A enables ISO (PMID:32165630) RGD PMID:32165630 NCBI chr 1:209,640,865...209,656,551
Ensembl chr 1:209,640,953...209,656,547 		JBrowse link
G Fbh1 F-box DNA helicase 1 enables ISO (PMID:19736316), (PMID:23393192) RGD PMID:19736316 PMID:23393192 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590 		JBrowse link
G Fubp3 far upstream element binding protein 3 enables ISO (PMID:8940189) RGD PMID:8940189 NCBI chr 3:14,855,527...14,904,540
Ensembl chr 3:14,855,557...14,904,540 		JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific enables ISO
ISS		 (PMID:30554877), (PMID:31235913)
(PMID:31806351)
GO_REF:0000024		 RGD
UniProt		 PMID:30554877 PMID:31235913 PMID:31806351 GO_REF:0000024 NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616 		JBrowse link
G Hmgb1 high mobility group box 1 IDA RGD PMID:11024186 RGD:2316830 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISS
ISO		 GO_REF:0000024
(PMID:11754747)		 AgBase
RGD		 PMID:11754747 GO_REF:0000024 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
Ensembl chr 1:32,710,658...32,713,140 		JBrowse link
G Hmgb2l1 high mobility group box 2-like 1 enables ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr11:47,252,583...47,253,646
Ensembl chr11:47,252,569...47,253,669
Ensembl chr 1:47,252,569...47,253,669 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables TAS
ISO
ISS		 (PMID:8521471)
GO_REF:0000024		 RGD
HGNC-UCL		 PMID:8521471 PMID:3005291 GO_REF:0000024, RGD:68800 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like enables ISO (PMID:9538234) RGD PMID:9538234 NCBI chr14:9,557,430...9,563,659
Ensembl chr14:9,557,425...9,562,506 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:15361071 RGD:10002777 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
IEA		 (PMID:1628625), (PMID:8068679), (PMID:8174554)
GO_REF:0000107		 RGD
Ensembl		 PMID:1628625 PMID:8068679 PMID:8174554 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Hrob homologous recombination factor with OB-fold enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:31467087)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:31467087 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483 		JBrowse link
G Ighm immunoglobulin heavy constant epsilon enables IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 6:132,329,269...133,053,426 JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO
IEA
ISS		 (PMID:30218034)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:30218034 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:200,506,641...200,529,293
Ensembl chr 1:200,506,338...200,529,514 		JBrowse link
G Jchain joining chain of multimeric IgA and IgM contributes_to ISO (PMID:21786026) RGD PMID:21786026 NCBI chr14:19,538,927...19,547,023
Ensembl chr14:19,538,952...19,546,298 		JBrowse link
G Lonp1 lon peptidase 1, mitochondrial enables IBA
ISO		 GO_REF:0000033
(PMID:12657466)		 GO_Central
RGD		 PMID:12657466 GO_REF:0000033 NCBI chr 9:1,447,444...1,459,771
Ensembl chr 9:1,447,447...1,459,771 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing enables IEA
ISO		 GO_REF:0000107
(PMID:12071956)		 Ensembl
RGD		 PMID:12071956 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,263,788...73,288,346
Ensembl chr17:73,266,095...73,287,364 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 contributes_to
enables		 ISO
IBA		 (PMID:25661590)
(PMID:10567526), (PMID:12207017)
PR:P97311|PR:Q61881 (PMID:15917436)
GO_REF:0000033		 RGD
GO_Central		 PMID:10567526 PMID:12207017 PMID:15917436 PMID:25661590 GO_REF:0000033 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 enables
contributes_to		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:10567526), (PMID:12207017)
PR:P49717|PR:Q61881 (PMID:15917436)
(PMID:25661590)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:10567526 PMID:12207017 PMID:15917436 PMID:25661590 GO_REF:0000024 GO_REF:0000107 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 contributes_to
enables		 ISO
IBA		 (PMID:25661590)
(PMID:12207017)
PR:P49717|PR:P97311 (PMID:15917436)
GO_REF:0000033		 RGD
GO_Central		 PMID:12207017 PMID:15917436 PMID:25661590 GO_REF:0000033 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600 		JBrowse link
G Meiob meiosis specific with OB-fold enables ISS
ISO
IBA		 GO_REF:0000024
(PMID:24068956), (PMID:24240703)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:24068956 PMID:24240703 GO_REF:0000024 GO_REF:0000033 NCBI chr10:13,833,170...13,865,684
Ensembl chr10:13,833,750...13,865,046 		JBrowse link
G Mlh1 mutL homolog 1 contributes_to
enables		 ISO
IEA		 (PMID:11809883)
GO_REF:0000107		 RGD
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mms22l MMS22-like, DNA repair protein enables ISO (PMID:27797818) RGD PMID:27797818 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745 		JBrowse link
G Msh2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 (PMID:11809883)
GO_REF:0000107		 RGD
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938 		JBrowse link
G Msh3 mutS homolog 3 contributes_to ISO (PMID:11809883) RGD PMID:11809883 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Nabp1 nucleic acid binding protein 1 enables ISS
ISO		 GO_REF:0000024
(PMID:16533169)		 UniProt
RGD		 PMID:16533169 GO_REF:0000024 NCBI chr 9:50,098,552...50,133,982
Ensembl chr 9:50,126,726...50,134,107 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO
ISS		 (PMID:18449195), (PMID:19683501)
GO_REF:0000024		 RGD
UniProt		 PMID:18449195 PMID:19683501 GO_REF:0000024 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
G Ncl nucleolin IDA RGD PMID:6311246 RGD:9693696 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Neil3 nei-like DNA glycosylase 3 enables ISO (PMID:19170771)
(PMID:20185759)		 RGD PMID:19170771 PMID:20185759 NCBI chr16:38,359,305...38,418,528
Ensembl chr16:38,359,371...38,418,527 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IDA RGD PMID:12010125 RGD:633207 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408 		JBrowse link
G Nol12 nucleolar protein 12 IDA RGD PMID:16430885 RGD:8553573 NCBI chr 7:110,493,294...110,498,908
Ensembl chr 7:110,493,246...110,498,907 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 enables TAS
IBA
IDA		 GO_REF:0000033
PMID:1627131		 GO_Central
RGD		 PMID:12413487 PMID:1627131 GO_REF:0000033, RGD:1298022, RGD:11344951 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229 		JBrowse link
G Park7 Parkinsonism associated deglycase NOT|enables ISO (PMID:22683601) RGD PMID:22683601 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables ISO (PMID:8152927)
(PMID:15836633)		 RGD PMID:8152927 PMID:15836633 NCBI chr 4:118,972,698...118,974,705
Ensembl chr 4:118,972,661...118,976,500 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables IBA
ISO		 GO_REF:0000033
(PMID:24026233)		 GO_Central
RGD		 PMID:24026233 GO_REF:0000033 NCBI chr 7:133,605,375...133,631,312
Ensembl chr 7:133,605,573...133,629,863 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component contributes_to ISO (PMID:11809883) RGD PMID:11809883 NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Polr2g RNA polymerase II subunit G enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H enables ISO (PMID:16632472) RGD PMID:16632472 NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515
Ensembl chr10:80,192,032...80,197,515 		JBrowse link
G Polr3c RNA polymerase III subunit C enables ISO
IEA
ISS		 (PMID:21358628)
GO_REF:0000104
GO_REF:0000024		 RGD
UniProt		 PMID:21358628 GO_REF:0000024 GO_REF:0000104 NCBI chr 2:184,246,201...184,262,150
Ensembl chr 2:184,246,204...184,262,208 		JBrowse link
G Pou4f1 POU class 4 homeobox 1 enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:8621561)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:8621561 GO_REF:0000024 GO_REF:0000107 NCBI chr15:81,253,714...81,260,057
Ensembl chr15:81,257,781...81,259,728 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:1561080 RGD:10045981 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
G Pura purine rich element binding protein A enables ISO
IEA		 (PMID:10318844), (PMID:12933792)
GO_REF:0000107		 RGD
Ensembl		 PMID:10318844 PMID:12933792 GO_REF:0000107 NCBI chr18:27,885,071...27,905,509
Ensembl chr18:27,884,556...27,905,513 		JBrowse link
G Purb purine rich element binding protein B enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:10318844), (PMID:12933792)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:10318844 PMID:12933792 GO_REF:0000024 GO_REF:0000107 NCBI chr14:81,342,374...81,344,857
Ensembl chr14:81,336,448...81,351,432 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:145,735,654...145,821,102
Ensembl chr 4:145,735,654...145,821,069 		JBrowse link
G Rad51 RAD51 recombinase enables ISO
IBA		 (PMID:26681308), (PMID:7988572)
(PMID:22778135)
GO_REF:0000033		 RGD
GO_Central		 PMID:7988572 PMID:22778135 PMID:26681308 GO_REF:0000033 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 enables ISO
IBA		 (PMID:17996711), (PMID:9396801)
GO_REF:0000033		 RGD
GO_Central		 PMID:9396801 PMID:17996711 GO_REF:0000033 NCBI chr 4:159,759,454...159,772,473
Ensembl chr 4:159,759,459...159,772,524 		JBrowse link
G Rad51b RAD51 paralog B enables ISO
IBA		 (PMID:12441335)
GO_REF:0000033		 RGD
GO_Central		 PMID:12441335 GO_REF:0000033 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979 		JBrowse link
G Rad51d RAD51 paralog D enables ISO
IBA		 (PMID:10871607)
GO_REF:0000033		 RGD
GO_Central		 PMID:10871607 GO_REF:0000033 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein enables ISO (PMID:12370410) RGD PMID:12370410 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207 		JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked enables ISO
IBA
IEA
ISS		 (PMID:28735897)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:28735897 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:103,089,284...103,176,840
Ensembl chr  X:103,089,284...103,176,838 		JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease enables ISO (PMID:21602889) RGD PMID:21602889 NCBI chr 3:10,280,654...10,291,003
Ensembl chr 3:10,280,654...10,290,996 		JBrowse link
G Rffl ring finger and FYVE-like domain containing E3 ubiquitin protein ligase enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:67,740,711...67,803,669
Ensembl chr10:67,740,712...67,824,434 		JBrowse link
G Rnf138 ring finger protein 138 enables ISO
IEA
IBA
ISS		 (PMID:26502055)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024		 RGD
Ensembl
GO_Central
UniProt		 PMID:26502055 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930 		JBrowse link
G Rnf138l1 ring finger protein 138 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:30,739,541...30,740,614
Ensembl chr  X:30,739,413...30,740,613 		JBrowse link
G Rpa1 replication protein A1 enables IDA
ISO		 (PMID:19010961), (PMID:8990123) RGD PMID:8990123 PMID:19010961 PMID:8463251 RGD:2307012 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rpa2 replication protein A2 enables IDA
IBA
ISO		 GO_REF:0000033
(PMID:19010961)		 GO_Central
RGD		 PMID:19010961 PMID:8463251 GO_REF:0000033, RGD:2307012 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Rpa3 replication protein A3 enables ISO
IBA		 (PMID:19010961)
GO_REF:0000033		 RGD
GO_Central		 PMID:19010961 GO_REF:0000033 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709 		JBrowse link
G Rpa3l1 replication protein A3 like 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) enables ISO (PMID:18184592) RGD PMID:18184592 NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables ISO (PMID:29670289) RGD PMID:29670289 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386 		JBrowse link
G Setmar SET domain and mariner transposase fusion gene enables ISO (PMID:24573677) RGD PMID:24573677 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197 		JBrowse link
G Shoc1 shortage in chiasmata 1 enables ISO (PMID:29742103) RGD PMID:29742103 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 enables ISO (PMID:20139420) RGD PMID:20139420 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 enables ISO (PMID:20139420) RGD PMID:20139420 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:33,978,730...34,033,201
Ensembl chr 6:33,978,716...34,031,746 		JBrowse link
G Spen spen family transcriptional repressor enables ISO (PMID:10451362) RGD PMID:10451362 NCBI chr 5:153,775,287...153,848,677
Ensembl chr 5:153,776,234...153,848,811 		JBrowse link
G Sprtn SprT-like N-terminal domain enables IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
GO_REF:0000002
(PMID:27871365), (PMID:32649882)		 Ensembl
UniProt
InterPro
RGD		 PMID:27871365 PMID:32649882 GO_REF:0000002 GO_REF:0000024 GO_REF:0000107 NCBI chr19:52,857,612...52,864,864
Ensembl chr19:52,857,866...52,864,864 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 enables NAS
IBA
IEA
ISO
ISS		 GO_REF:0000033
GO_REF:0000107
(PMID:21953457), (PMID:26446790), (PMID:31550240)
GO_REF:0000024
GO_REF:0000002		 GO_Central
Ensembl
RGD
UniProt
InterPro		 PMID:21953457 PMID:26446790 PMID:31550240 PMID:8482537 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:730021 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135 		JBrowse link
G Ssbp2 single-stranded DNA binding protein 2 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:22,650,488...22,938,669
Ensembl chr 2:22,651,258...22,933,696 		JBrowse link
G Ssbp3 single stranded DNA binding protein 3 enables TAS
IEA		 GO_REF:0000002 InterPro
RGD		 PMID:10524251 GO_REF:0000002, RGD:634142 NCBI chr 5:121,691,370...121,828,035
Ensembl chr 5:121,691,393...121,827,992 		JBrowse link
G Ssbp4 single stranded DNA binding protein 4 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:18,828,014...18,838,941
Ensembl chr16:18,828,054...18,838,947 		JBrowse link
G Stn1 STN1 subunit of CST complex enables ISS
ISO
IBA		 GO_REF:0000024
(PMID:19119139)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:19119139 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
G Sub1 SUB1 regulator of transcription enables ISO (PMID:16605275), (PMID:8062391) RGD PMID:8062391 PMID:16605275 NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436
Ensembl chr 2:61,005,666...61,020,436 		JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 enables ISO
IBA		 (PMID:21965664)
GO_REF:0000033		 RGD
GO_Central		 PMID:21965664 GO_REF:0000033 NCBI chr 8:20,486,680...20,489,213
Ensembl chr 8:20,486,678...20,489,211 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 enables ISO
IBA
IEA		 (PMID:15811850)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15811850 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:119,163,192...119,231,029
Ensembl chr 6:119,163,166...119,231,021 		JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 enables ISO
IBA
ISS
IEA		 (PMID:22822062)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
UniProt
Ensembl		 PMID:22822062 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr17:40,228,943...40,240,337
Ensembl chr17:40,228,947...40,240,313 		JBrowse link
G Ten1 TEN1 subunit of CST complex enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:101,431,328...101,455,105
Ensembl chr10:101,431,328...101,453,052 		JBrowse link
G Top1 DNA topoisomerase I enables ISO
IEA		 (PMID:8631794)
GO_REF:0000107		 RGD
Ensembl		 PMID:8631794 GO_REF:0000107 NCBI chr 3:149,293,469...149,376,618
Ensembl chr 3:149,293,403...149,376,623 		JBrowse link
G Top3a DNA topoisomerase III alpha enables ISO (PMID:29290614) RGD PMID:29290614 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables ISO (PMID:17293595), (PMID:17355961) RGD PMID:17293595 PMID:17355961 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
G Tsn translin contributes_to IDA RGD PMID:9681436 RGD:634412 NCBI chr13:29,366,405...29,377,251
Ensembl chr13:29,364,110...29,377,599 		JBrowse link
G Tsnax translin-associated factor X contributes_to IDA RGD PMID:9681436 RGD:634412 NCBI chr19:52,975,848...52,989,886
Ensembl chr19:52,975,659...52,989,878 		JBrowse link
G Twnk twinkle mtDNA helicase enables ISO
IBA		 (PMID:18971204)
GO_REF:0000033		 RGD
GO_Central		 PMID:18971204 GO_REF:0000033 NCBI chr 1:243,867,568...243,874,802
Ensembl chr 1:243,868,330...243,874,802 		JBrowse link
G Wdr48 WD repeat domain 48 enables ISO (PMID:27239033) RGD PMID:27239033 NCBI chr 8:119,622,053...119,655,264
Ensembl chr 8:119,622,048...119,655,264 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor enables ISO
IBA		 (PMID:12509299)
GO_REF:0000033		 RGD
GO_Central		 PMID:12509299 GO_REF:0000033 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010 		JBrowse link
G Ybx1 Y box binding protein 1 enables IDA
ISO		 (PMID:15282343) RGD PMID:15282343 PMID:17893273 RGD:2311253 NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862 		JBrowse link
G Ybx3 Y box binding protein 3 IDA RGD PMID:8029009 RGD:632638 NCBI chr 4:165,129,747...165,153,101
Ensembl chr 4:165,129,758...165,153,161 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad54l RAD54 like enables ISO (PMID:22705370) RGD PMID:22705370 NCBI chr 5:129,575,431...129,605,100
Ensembl chr 5:129,575,378...129,605,070 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables ISO (PMID:22705370) RGD PMID:22705370 NCBI chr  X:126,980,201...127,066,385
Ensembl chr  X:126,994,947...127,066,347 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 enables ISO
ISS		 (PMID:18974355), (PMID:22705370)
GO_REF:0000024		 RGD
UniProt		 PMID:18974355 PMID:22705370 GO_REF:0000024 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146 		JBrowse link
G Tp53 tumor protein p53 enables ISO
IEA
ISS		 (PMID:8183576)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:8183576 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 enables ISO (PMID:21078962), (PMID:22704558), (PMID:22705370) RGD PMID:21078962 PMID:22704558 PMID:22705370 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IDA RGD PMID:8127654 RGD:728600 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:8208614) RGD PMID:8208614 NCBI chr 7:133,605,375...133,631,312
Ensembl chr 7:133,605,573...133,629,863 		JBrowse link
G Pcbp3 poly(rC) binding protein 3 enables ISO (PMID:22521865) RGD PMID:22521865 NCBI chr20:11,678,218...11,878,210
Ensembl chr20:11,678,269...11,878,210 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) RGD PMID:25589350 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 IDA RGD PMID:20655937 RGD:7421590 NCBI chr 1:217,861,175...217,877,205
Ensembl chr 1:217,861,175...217,877,343 		JBrowse link
G Blm BLM RecQ like helicase enables ISO (PMID:17878217) RGD PMID:17878217 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IDA RGD PMID:1703006 RGD:10045979 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Recql RecQ like helicase enables ISO
IEA		 (PMID:19177149)
GO_REF:0000107		 RGD
Ensembl		 PMID:19177149 GO_REF:0000107 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945 		JBrowse link
G Recql4 RecQ like helicase 4 enables ISO (PMID:19177149) RGD PMID:19177149 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619 		JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:8493094) RGD PMID:8493094 NCBI chr 1:200,506,641...200,529,293
Ensembl chr 1:200,506,338...200,529,514 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 enables ISO (PMID:22763445) RGD PMID:22763445 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO
IEA		 (PMID:23935072)
GO_REF:0000107		 RGD
Ensembl		 PMID:23935072 GO_REF:0000107 NCBI chr 7:134,375,318...134,381,610
Ensembl chr 7:134,375,150...134,381,609 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO
IEA		 (PMID:25589350)
GO_REF:0000107		 RGD
Ensembl		 PMID:25589350 GO_REF:0000107 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO
IBA		 (PMID:17237768), (PMID:21852327), (PMID:22763445)
GO_REF:0000033		 RGD
GO_Central		 PMID:17237768 PMID:21852327 PMID:22763445 GO_REF:0000033 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Pot1b protection of telomeres 1B enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:9,670,355...9,728,624
Ensembl chr 9:9,670,362...9,728,532 		JBrowse link
G Rpa1 replication protein A1 enables ISO (PMID:16973897), (PMID:24747047), (PMID:26041456) RGD PMID:16973897 PMID:24747047 PMID:26041456 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rpa2 replication protein A2 enables ISO (PMID:24747047) RGD PMID:24747047 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO (PMID:17694070) RGD PMID:17694070 NCBI chr 5:3,443,103...3,472,377
Ensembl chr 5:3,443,106...3,472,340 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables ISO
IBA		 (PMID:17694070)
GO_REF:0000033		 RGD
GO_Central		 PMID:17694070 GO_REF:0000033 NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock transcription factor 1 IDA RGD PMID:21512157 RGD:10402944 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables ISO (PMID:15836633) RGD PMID:15836633 NCBI chr 4:118,972,698...118,974,705
Ensembl chr 4:118,972,661...118,976,500 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO
IBA
IEA
IDA		 (PMID:15659580)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:15659580 PMID:15659580 GO_REF:0000033 GO_REF:0000107, RGD:10680046 NCBI chr 4:80,534,659...80,545,297
Ensembl chr 4:80,534,651...80,545,249 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:12768206), (PMID:15632080), (PMID:17237767)
(PMID:17053789)		 RGD PMID:12768206 PMID:15632080 PMID:17053789 PMID:17237767 NCBI chr 4:54,205,330...54,263,137
Ensembl chr 4:54,205,332...54,263,042 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rpa1 replication protein A1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Stn1 STN1 subunit of CST complex enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000002
(PMID:19648609)
GO_REF:0000104		 UniProt
InterPro
RGD		 PMID:19648609 GO_REF:0000002 GO_REF:0000024 GO_REF:0000104 NCBI chr 1:246,391,311...246,429,844
Ensembl chr 1:246,395,613...246,429,531 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20634
    binding 17722
      organic cyclic compound binding 6137
        nucleic acid binding 3846
          DNA binding 2276
            single-stranded DNA binding 128
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 14
paths to the root