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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699


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single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor enables ISO (PMID:10786854) MGI PMID:10786854 NCBI chr12:1,099,239...1,103,058
Ensembl chr12:1,092,329...1,103,054 		JBrowse link
G ANXA1 annexin A1 contributes_to ISO RGD PMID:10548514 PMID:20655937 RGD:2306916 RGD:7421590 NCBI chr 1:226,414,200...226,431,963
Ensembl chr 1:226,414,306...226,432,279 		JBrowse link
G APTX aprataxin enables IBA GO_Central GO_REF:0000033 NCBI chr10:33,470,089...33,495,584
Ensembl chr10:33,445,148...33,543,710 		JBrowse link
G BARD1 BRCA1 associated RING domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr15:117,049,483...117,135,889
Ensembl chr15:117,047,845...117,175,851 		JBrowse link
G BLM BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,645 		JBrowse link
G BRCA2 BRCA2 DNA repair associated enables ISO (PMID:20729832) RGD
UniProt		 PMID:12228710 PMID:20729832 RGD:632363 NCBI chr11:8,805,950...8,858,128
Ensembl chr11:8,805,913...8,857,793 		JBrowse link
G C6H19orf33 chromosome 6 C19orf33 homolog NOT|enables ISO (PMID:11080599) HGNC-UCL PMID:11080599 NCBI chr 6:47,223,077...47,224,230 JBrowse link
G CDC45 cell division cycle 45 enables IBA GO_Central GO_REF:0000033 NCBI chr14:51,133,111...51,158,604
Ensembl chr14:51,133,408...51,158,606 		JBrowse link
G CNBP CCHC-type zinc finger nucleic acid binding protein ISO RGD PMID:7788528 RGD:632384 NCBI chr13:71,634,552...71,707,027
Ensembl chr13:71,630,566...71,646,563 		JBrowse link
G CRY2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:16,587,101...16,620,380
Ensembl chr 2:16,587,109...16,620,385 		JBrowse link
G CTC1 CST telomere replication complex component 1 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr12:53,427,807...53,454,149
Ensembl chr12:53,428,367...53,454,126 		JBrowse link
G DDX11 DEAD/H-box helicase 11 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,364,877...67,395,730 		JBrowse link
G DHX36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chr13:94,298,790...94,350,333
Ensembl chr13:94,298,794...94,350,308 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,141,967...124,185,349 		JBrowse link
G DMC1 DNA meiotic recombinase 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,177...9,470,113 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 6:51,783,537...51,808,898
Ensembl chr 6:51,783,478...51,798,984 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit enables IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,269,989...29,306,151 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr11:71,141,823...71,168,326
Ensembl chr11:71,141,842...71,168,322 		JBrowse link
G FAM111A FAM111 trypsin like peptidase A enables IEA Ensembl GO_REF:0000107 NCBI chr 2:12,250,529...12,263,497
Ensembl chr 2:12,250,538...12,260,985 		JBrowse link
G FBH1 F-box DNA helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:65,060,714...65,108,975
Ensembl chr10:65,060,312...65,108,379 		JBrowse link
G FUBP3 far upstream element binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:270,649,796...270,702,920
Ensembl chr 1:270,652,450...270,702,918 		JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr13:71,732,311...71,752,296
Ensembl chr13:71,732,277...71,753,486 		JBrowse link
G HMGB1 high mobility group box 1 ISO RGD PMID:11024186 RGD:2316830 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 enables IMP (PMID:11754747) AgBase PMID:11754747 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,101 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:19,485,033...19,491,418
Ensembl chr 5:19,485,096...19,491,417 		JBrowse link
G HNRNPDL heterogeneous nuclear ribonucleoprotein D like enables ISO (PMID:9538234) UniProt PMID:9538234 NCBI chr 8:135,802,530...135,809,871
Ensembl chr 8:135,802,896...135,809,862 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chr10:30,975,639...30,987,955
Ensembl chr10:30,975,702...30,987,956 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl GO_REF:0000107 NCBI chr10:17,475,266...17,497,060
Ensembl chr10:17,477,902...17,497,030 		JBrowse link
G HROB homologous recombination factor with OB-fold enables IEA Ensembl GO_REF:0000107 NCBI chr12:19,044,569...19,077,877
Ensembl chr12:19,044,043...19,077,829 		JBrowse link
G IGHMBP2 immunoglobulin mu DNA binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:4,169,510...4,194,699
Ensembl chr 2:4,171,344...4,194,525 		JBrowse link
G JCHAIN joining chain of multimeric IgA and IgM contributes_to
enables		 ISO
IEA		 (PMID:21786026) UniProtKB
Ensembl		 PMID:21786026 GO_REF:0000107 NCBI chr 8:67,439,405...67,448,628
Ensembl chr 8:67,439,415...67,494,980 		JBrowse link
G LOC100512195 activated RNA polymerase II transcriptional coactivator p15 enables IEA Ensembl GO_REF:0000107 NCBI chr15:17,576,852...17,578,161
Ensembl chr16:18,758,962...18,779,419 		JBrowse link
G LOC100514009 histone-lysine N-methyltransferase SETMAR enables ISO (PMID:24573677) UniProt PMID:24573677 NCBI chr13:60,914,412...60,933,064 JBrowse link
G LONP1 lon peptidase 1, mitochondrial enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:73,266,310...73,286,774
Ensembl chr 2:73,266,258...73,286,773 		JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing enables IEA Ensembl GO_REF:0000107 NCBI chr 3:96,474,510...96,590,706
Ensembl chr 3:96,474,549...96,595,143 		JBrowse link
G MCM10 minichromosome maintenance 10 replication initiation factor enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr10:48,481,292...48,523,921
Ensembl chr10:48,480,705...48,538,952 		JBrowse link
G MCM3 minichromosome maintenance complex component 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 7:46,084,648...46,104,425
Ensembl chr 7:46,084,662...46,104,375 		JBrowse link
G MCM4 minichromosome maintenance complex component 4 contributes_to
enables		 ISO
IBA
IEA		 (PMID:25661590)
(PMID:10567526), (PMID:12207017)		 UniProt
GO_Central
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:79,674,737...79,686,964
Ensembl chr 4:79,674,739...79,686,685 		JBrowse link
G MCM5 minichromosome maintenance complex component 5 enables IBA GO_Central GO_REF:0000033
G MCM6 minichromosome maintenance complex component 6 contributes_to
enables		 ISO
IBA
IEA		 (PMID:25661590)
(PMID:12207017)
(PMID:10567526)		 UniProt
GO_Central
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000033 GO_REF:0000107 NCBI chr15:15,923,638...15,978,587
Ensembl chr15:15,923,681...15,985,405 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 contributes_to
enables		 ISO
IBA
IEA		 (PMID:25661590)
(PMID:12207017)		 UniProt
GO_Central
Ensembl		 PMID:12207017 PMID:25661590 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:8,005,890...8,014,047
Ensembl chr 3:8,005,900...8,014,053 		JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor enables IBA GO_Central GO_REF:0000033 NCBI chr17:14,790,398...14,837,420
Ensembl chr17:14,790,396...14,837,416 		JBrowse link
G MEIOB meiosis specific with OB-fold enables IEA Ensembl GO_REF:0000107 NCBI chr 3:40,092,689...40,133,173
Ensembl chr 3:40,092,732...40,133,171 		JBrowse link
G MLH1 mutL homolog 1 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757 		JBrowse link
G MMS22L MMS22 like, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chr 1:64,306,078...64,459,956
Ensembl chr 1:64,306,073...64,459,904 		JBrowse link
G MSH2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 3:93,082,958...93,163,556
Ensembl chr 3:93,081,219...93,163,585 		JBrowse link
G MSH3 mutS homolog 3 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 2:89,255,647...89,456,102
Ensembl chr 2:89,250,003...89,453,936 		JBrowse link
G NABP1 nucleic acid binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr15:96,313,884...96,322,108
Ensembl chr15:96,313,903...96,335,191 		JBrowse link
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:21,624,654...21,631,716
Ensembl chr 5:21,624,762...21,631,706 		JBrowse link
G NCL nucleolin ISO RGD PMID:6311246 RGD:9693696 NCBI chr15:132,163,453...132,174,214
Ensembl chr15:132,162,516...132,174,172 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr15:39,416,073...39,632,313
Ensembl chr15:39,581,856...39,632,308 		JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 ISO RGD PMID:12010125 RGD:633207 NCBI chr12:27,416,308...27,435,044
Ensembl chr12:27,416,346...27,436,140 		JBrowse link
G NOL12 nucleolar protein 12 ISO RGD PMID:16430885 RGD:8553573 NCBI chr 5:10,137,362...10,144,156
Ensembl chr 5:10,137,362...10,144,140 		JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 enables ISO PMID:1627131 ParkinsonsUK-UCL PMID:1627131 RGD:11344951 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,517 		JBrowse link
G PARK7 Parkinsonism associated deglycase NOT|enables ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chr 6:68,629,327...68,645,147
Ensembl chr 6:68,629,214...68,645,516 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:72,378,643...72,380,364
Ensembl chr 3:72,379,025...72,380,095 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables IBA GO_Central GO_REF:0000033 NCBI chr 5:18,670,124...18,703,745
Ensembl chr 5:18,673,981...18,704,978 		JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 3:5,118,002...5,145,634
Ensembl chr 3:5,118,018...5,145,628 		JBrowse link
G POLR2G RNA polymerase II subunit G enables IBA GO_Central GO_REF:0000033 NCBI chr 2:9,004,388...9,008,631
Ensembl chr 2:9,004,390...9,017,779 		JBrowse link
G POLR2H RNA polymerase II, I and III subunit H enables IEA Ensembl GO_REF:0000107 NCBI chr13:122,250,087...122,256,201
Ensembl chr13:122,250,020...122,256,195 		JBrowse link
G POLR3C RNA polymerase III subunit C enables IEA Ensembl
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 4:99,480,213...99,494,137
Ensembl chr 4:99,479,372...99,494,142 		JBrowse link
G POU4F1 POU class 4 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:50,729,746...50,732,626
Ensembl chr11:50,730,428...50,732,539 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:1561080 RGD:10045981 NCBI chr 2:77,551,562...77,563,153
Ensembl chr 2:77,551,562...77,563,134 		JBrowse link
G PURA purine rich element binding protein A enables IEA Ensembl GO_REF:0000107 NCBI chr 2:141,877,775...141,899,259
Ensembl chr 2:141,884,155...141,886,330 		JBrowse link
G PURB purine rich element binding protein B enables IEA Ensembl GO_REF:0000107 NCBI chr18:50,510,010...50,518,965
Ensembl chr18:50,510,182...50,511,108 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase enables IEA InterPro GO_REF:0000002 NCBI chr13:65,253,416...65,359,506
Ensembl chr13:65,253,424...65,359,174 		JBrowse link
G RAD51 RAD51 recombinase enables IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,665...130,640,136 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,539...65,897,212 		JBrowse link
G RAD51B RAD51 paralog B enables IEA Ensembl GO_REF:0000107 NCBI chr 7:91,592,413...92,301,383
Ensembl chr 7:91,592,424...92,345,294 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,143,646...68,169,670 		JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked enables IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:87,025,603...87,103,503
Ensembl chr  X:87,025,603...87,103,501 		JBrowse link
G REXO4 REX4 homolog, 3'-5' exonuclease enables IEA Ensembl GO_REF:0000107 NCBI chr 1:273,011,736...273,021,956
Ensembl chr 1:273,011,734...273,021,938 		JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase enables IEA Ensembl GO_REF:0000107 NCBI chr12:40,054,175...40,072,831
Ensembl chr12:40,054,181...40,072,822 		JBrowse link
G RNF138 ring finger protein 138 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:115,927,021...115,975,754
Ensembl chr 6:115,926,774...115,978,724 		JBrowse link
G RPA1 replication protein A1 enables ISO
IEA		 RGD
Ensembl		 PMID:8463251 GO_REF:0000107 RGD:2307012 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,719...48,048,741 		JBrowse link
G RPA2 replication protein A2 enables ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:8463251 GO_REF:0000033 GO_REF:0000107 RGD:2307012 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,582...85,045,915 		JBrowse link
G RPA3 replication protein A3 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:77,910,876...77,914,872
Ensembl chr 9:77,910,881...77,937,060 		JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component enables IEA Ensembl GO_REF:0000107 NCBI chr 1:129,886,798...129,942,845
Ensembl chr 1:129,886,800...129,943,181 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:40,117,348...40,171,935
Ensembl chr17:40,107,462...40,171,878 		JBrowse link
G SHOC1 shortage in chiasmata 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 1:252,465,893...252,555,063
Ensembl chr 1:252,466,222...252,562,066 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,147...245,475,929 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 enables IEA Ensembl GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,272...100,117,309 		JBrowse link
G SMC6 structural maintenance of chromosomes 6 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:120,097,361...120,170,974
Ensembl chr 3:120,097,379...120,170,971 		JBrowse link
G SPEN spen family transcriptional repressor enables ISO (PMID:10451362) MGI PMID:10451362 NCBI chr 6:75,015,565...75,107,468
Ensembl chr 6:75,015,521...75,107,033 		JBrowse link
G SPRTN SprT-like N-terminal domain enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr14:59,177,801...59,192,221
Ensembl chr14:59,171,192...59,192,269 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 enables IEA
IBA		 Ensembl
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr18:8,084,292...8,167,983
Ensembl chr18:8,151,029...8,167,983 		JBrowse link
G SSBP2 single stranded DNA binding protein 2 enables IEA InterPro GO_REF:0000002 NCBI chr 2:89,960,133...90,263,290
Ensembl chr 2:89,948,773...90,263,158 		JBrowse link
G SSBP3 single stranded DNA binding protein 3 enables IEA InterPro GO_REF:0000002 NCBI chr 6:157,911,583...158,081,478
Ensembl chr 6:157,911,493...158,081,476 		JBrowse link
G SSBP4 single stranded DNA binding protein 4 enables IEA InterPro GO_REF:0000002 NCBI chr 2:59,367,243...59,384,584
Ensembl chr 2:59,367,246...59,384,537 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA Ensembl GO_REF:0000107 NCBI chr14:114,808,217...114,851,130
Ensembl chr14:114,810,201...114,851,025 		JBrowse link
G SUB1 SUB1 regulator of transcription enables IEA Ensembl GO_REF:0000107 NCBI chr16:18,758,886...18,779,421
Ensembl chr16:18,758,962...18,779,419 		JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 enables ISO (PMID:21965664) UniProt PMID:21965664 NCBI chr 2:70,060,186...70,061,989
Ensembl chr 2:70,060,193...70,063,261 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:111,767,094...111,853,262
Ensembl chr 7:111,767,089...111,853,249 		JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:19,489,381...19,502,437
Ensembl chr 7:19,489,384...19,502,520 		JBrowse link
G TEN1 TEN1 subunit of CST complex enables IEA InterPro GO_REF:0000002 NCBI chr12:5,430,940...5,451,140
Ensembl chr12:5,430,840...5,451,121 		JBrowse link
G TOP1 DNA topoisomerase I enables ISO (PMID:8631794) CAFA PMID:8631794 NCBI chr17:43,710,270...43,799,700
Ensembl chr17:43,710,290...43,799,700 		JBrowse link
G TOP3A DNA topoisomerase III alpha enables IEA Ensembl GO_REF:0000107 NCBI chr12:60,443,592...60,468,968
Ensembl chr12:60,443,677...60,468,964 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:31,177,604...31,180,764
Ensembl chr13:31,179,291...31,180,747 		JBrowse link
G TSN translin contributes_to
enables		 ISO
IEA		 RGD
InterPro		 PMID:9681436 GO_REF:0000002 RGD:634412 NCBI chr15:29,704,499...29,714,096
Ensembl chr15:29,675,820...29,714,079 		JBrowse link
G TSNAX translin associated factor X contributes_to ISO RGD PMID:9681436 RGD:634412 NCBI chr14:59,027,295...59,058,300
Ensembl chr14:59,024,034...59,058,308 		JBrowse link
G TWNK twinkle mtDNA helicase enables IEA
IBA		 Ensembl
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr14:112,068,463...112,076,169
Ensembl chr14:112,069,925...112,075,792 		JBrowse link
G WDR48 WD repeat domain 48 enables IEA Ensembl GO_REF:0000107 NCBI chr13:23,735,566...23,786,312
Ensembl chr13:23,735,567...23,786,308 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:70,348,841...70,397,194
Ensembl chr13:70,348,864...70,397,772 		JBrowse link
G YBX1 Y-box binding protein 1 enables ISO
IEA		 RGD
Ensembl		 PMID:17893273 GO_REF:0000107 RGD:2311253 NCBI chr 6:168,716,782...168,736,475
Ensembl chr 6:168,716,772...168,736,604 		JBrowse link
G YBX3 Y-box binding protein 3 ISO RGD PMID:8029009 RGD:632638 NCBI chr 5:61,337,868...61,361,269
Ensembl chr 5:61,337,862...61,361,279 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD54L RAD54 like enables IEA Ensembl GO_REF:0000107 NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776 		JBrowse link
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 enables ISO (PMID:22705370) UniProt PMID:22705370 NCBI chr  X:106,039,961...106,116,156
Ensembl chr  X:106,039,969...106,116,139 		JBrowse link
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 enables IEA Ensembl GO_REF:0000107 NCBI chr15:118,627,734...118,688,005
Ensembl chr15:118,627,497...118,688,396 		JBrowse link
G TP53 tumor protein p53 enables ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818 		JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 enables IEA Ensembl GO_REF:0000107 NCBI chr15:16,414,291...16,727,659
Ensembl chr15:16,414,757...16,727,841 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:8127654 RGD:728600 NCBI chr10:30,975,639...30,987,955
Ensembl chr10:30,975,702...30,987,956 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables ISO (PMID:8208614) MGI PMID:8208614 NCBI chr 5:18,670,124...18,703,745
Ensembl chr 5:18,673,981...18,704,978 		JBrowse link
G PCBP3 poly(rC) binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chr13:208,060,949...208,259,368
Ensembl chr13:208,094,877...208,259,369 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NABP2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr 5:21,624,654...21,631,716
Ensembl chr 5:21,624,762...21,631,706 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chr 1:226,414,200...226,431,963
Ensembl chr 1:226,414,306...226,432,279 		JBrowse link
G BLM BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,645 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:1703006 RGD:10045979 NCBI chr 5:19,485,033...19,491,418
Ensembl chr 5:19,485,096...19,491,417 		JBrowse link
G RECQL RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr 5:51,953,460...51,995,619
Ensembl chr 5:51,953,451...52,003,740 		JBrowse link
G RECQL4 RecQ like helicase 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:287,206...293,629
Ensembl chr 4:287,214...293,913 		JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGHMBP2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:8493094) MGI PMID:8493094 NCBI chr 2:4,169,510...4,194,699
Ensembl chr 2:4,171,344...4,194,525 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,885,749...22,981,890 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTC1 CST telomere replication complex component 1 enables IEA Ensembl GO_REF:0000107 NCBI chr12:53,427,807...53,454,149
Ensembl chr12:53,428,367...53,454,126 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:19,485,033...19,491,418
Ensembl chr 5:19,485,096...19,491,417 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr18:46,205,164...46,215,861
Ensembl chr18:46,205,418...46,215,856 		JBrowse link
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:21,624,654...21,631,716
Ensembl chr 5:21,624,762...21,631,706 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,885,749...22,981,890 		JBrowse link
G RPA1 replication protein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,719...48,048,741 		JBrowse link
G RPA2 replication protein A2 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,582...85,045,915 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:62,797,244...62,831,459
Ensembl chr 4:62,797,000...62,831,454 		JBrowse link
G TERF2 telomeric repeat binding factor 2 enables IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:17,605,748...17,631,795
Ensembl chr 6:17,605,763...17,631,721 		JBrowse link
G TERF2IP TERF2 interacting protein enables IEA Ensembl GO_REF:0000107 NCBI chr 6:12,047,409...12,057,451
Ensembl chr 6:12,014,243...12,057,448 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chr 4:463,531...486,483
Ensembl chr 4:463,393...486,473 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:72,378,643...72,380,364
Ensembl chr 3:72,379,025...72,380,095 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IBA GO_Central GO_REF:0000033 NCBI chr18:46,205,164...46,215,861
Ensembl chr18:46,205,418...46,215,856 		JBrowse link
G POT1 protection of telomeres 1 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,885,749...22,981,890 		JBrowse link
G RAD50 RAD50 double strand break repair protein enables IBA GO_Central GO_REF:0000033 NCBI chr 2:134,844,460...134,939,188
Ensembl chr 2:134,700,817...134,939,189 		JBrowse link
G RPA1 replication protein A1 enables IBA GO_Central GO_REF:0000033 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,719...48,048,741 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr14:114,808,217...114,851,130
Ensembl chr14:114,810,201...114,851,025 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18634
    binding 16167
      organic cyclic compound binding 5445
        nucleic acid binding 3405
          DNA binding 2170
            single-stranded DNA binding 120
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 14
paths to the root