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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699

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single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor enables ISO (PMID:10786854) MGI PMID:10786854 NCBI chrNW_004624801:10,734,392...10,738,191
Ensembl chrNW_004624801:10,733,907...10,738,124 		JBrowse link
G Anxa1 annexin A1 contributes_to ISO RGD PMID:10548514 PMID:20655937 RGD:2306916 RGD:7421590 NCBI chrNW_004624811:765,338...782,203
Ensembl chrNW_004624811:764,940...782,198 		JBrowse link
G Aptx aprataxin enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:37,729,624...37,757,780
Ensembl chrNW_004624736:37,730,072...37,749,174 		JBrowse link
G Blm BLM RecQ like helicase enables ISO (PMID:12818200), (PMID:20639533) UniProt PMID:12818200 PMID:20639533 NCBI chrNW_004624768:17,422,267...17,522,894
Ensembl chrNW_004624768:17,421,291...17,522,799 		JBrowse link
G Brca2 BRCA2 DNA repair associated enables ISO (PMID:20729832) UniProt
RGD		 PMID:12228710 PMID:20729832 RGD:632363 NCBI chrNW_004624776:5,497,552...5,573,465
Ensembl chrNW_004624776:5,497,779...5,550,993 		JBrowse link
G Cdc45 cell division cycle 45 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:132,731...161,590
Ensembl chrNW_004624747:132,835...161,553 		JBrowse link
G Cnbp CCHC-type zinc finger nucleic acid binding protein ISO RGD PMID:7788528 RGD:632384 NCBI chrNW_004624943:943,381...955,997
Ensembl chrNW_004624943:944,900...959,999 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 enables ISO (PMID:12627958) UniProt PMID:12627958 NCBI chrNW_004624767:2,622,786...2,652,663
Ensembl chrNW_004624767:2,621,311...2,653,071 		JBrowse link
G Ctc1 CST telomere replication complex component 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624786:10,795,848...10,819,029
Ensembl chrNW_004624786:10,795,193...10,819,613 		JBrowse link
G CUNH19orf33 chromosome unknown C19orf33 homolog NOT|enables ISO (PMID:11080599) HGNC-UCL PMID:11080599 NCBI chrNW_004624794:11,773,557...11,774,502 JBrowse link
G Ddx11 DEAD/H-box helicase 11 enables ISO (PMID:9013641) UniProt PMID:9013641 NCBI chrNW_004624828:269,444...301,899
Ensembl chrNW_004624828:269,843...302,301 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables ISO (PMID:20696886) UniProt PMID:20696886 NCBI chrNW_004624730:31,857,157...31,913,985
Ensembl chrNW_004624730:31,855,992...31,914,253 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:10198287), (PMID:20696886), (PMID:21957149), (PMID:9111062) UniProt PMID:9111062 PMID:10198287 PMID:20696886 PMID:21957149 NCBI chrNW_004624814:10,863,079...10,923,842
Ensembl chrNW_004624814:10,863,337...10,921,075 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:9,547,327...9,585,549
Ensembl chrNW_004624752:9,548,015...9,585,958 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624907:2,288,380...2,298,909
Ensembl chrNW_004624907:2,288,423...2,298,373 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624782:4,508,758...4,537,751
Ensembl chrNW_004624782:4,512,650...4,537,701 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624793:8,632,581...8,657,514
Ensembl chrNW_004624793:8,632,471...8,657,346 		JBrowse link
G Fam111a FAM111 trypsin like peptidase A enables ISO (PMID:32165630) UniProt PMID:32165630 NCBI chrNW_004624864:1,518,454...1,532,126
Ensembl chrNW_004624864:1,521,966...1,525,962 		JBrowse link
G Fbh1 F-box DNA helicase 1 enables ISO (PMID:19736316), (PMID:23393192) UniProt PMID:19736316 PMID:23393192 NCBI chrNW_004624775:788,388...844,968
Ensembl chrNW_004624775:788,463...837,524 		JBrowse link
G Fubp3 far upstream element binding protein 3 enables ISO (PMID:8940189) MGI PMID:8940189 NCBI chrNW_004624760:5,078,698...5,122,905 JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624872:344,249...353,577
Ensembl chrNW_004624872:344,262...352,936 		JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:11024186 RGD:2316830 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISO (PMID:11754747) AgBase PMID:11754747 NCBI chrNW_004624769:4,834,998...4,837,111 JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:8521471) HGNC-UCL PMID:8521471 NCBI chrNW_004624904:2,314,197...2,320,900
Ensembl chrNW_004624904:2,314,249...2,318,791 		JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D like enables ISO (PMID:9538234) UniProt PMID:9538234 NCBI chrNW_004624757:8,488,619...8,495,498
Ensembl chrNW_004624757:8,488,365...8,495,822 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chrNW_004624809:7,538,568...7,548,272 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO (PMID:1628625), (PMID:8068679), (PMID:8174554) UniProt PMID:1628625 PMID:8068679 PMID:8174554 NCBI chrNW_004624771:14,756,088...14,766,106
Ensembl chrNW_004624771:14,756,100...14,765,832 		JBrowse link
G Hrob homologous recombination factor with OB-fold enables ISO (PMID:31467087) UniProt PMID:31467087 NCBI chrNW_004624795:799,533...806,876 JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:30218034) UniProt PMID:30218034 NCBI chrNW_004624767:18,038,559...18,065,745
Ensembl chrNW_004624767:18,036,650...18,065,742 		JBrowse link
G Jchain joining chain of multimeric IgA and IgM contributes_to ISO (PMID:21786026) UniProtKB PMID:21786026 NCBI chrNW_004624890:1,992,239...2,022,352
Ensembl chrNW_004624890:1,990,696...2,014,041 		JBrowse link
G LOC101704237 histone-lysine N-methyltransferase SETMAR enables ISO (PMID:24573677) UniProt PMID:24573677 NCBI chrNW_004624773:14,680,571...14,692,583 JBrowse link
G LOC101714760 sprT-like domain-containing protein Spartan enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:45,548,452...45,552,501 JBrowse link
G Lonp1 lon peptidase 1, mitochondrial enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:4,494,786...4,516,772
Ensembl chrNW_004624828:4,494,813...4,516,510 		JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:25,340,588...25,452,593
Ensembl chrNW_004624738:25,338,098...25,452,676 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624805:5,728,781...5,766,796
Ensembl chrNW_004624805:5,728,569...5,765,862 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624855:3,806,273...3,825,143
Ensembl chrNW_004624855:3,806,553...3,827,873 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:10567526), (PMID:12207017)		 UniProt
Ensembl
TreeGrafter		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624735:7,516,510...7,533,789
Ensembl chrNW_004624735:7,516,516...7,533,760 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:327,444...340,790
Ensembl chrNW_004624750:327,304...341,325 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:12207017)
(PMID:10567526)		 UniProt
Ensembl
TreeGrafter		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624732:35,179,488...35,217,437
Ensembl chrNW_004624732:35,179,488...35,217,391 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:12207017)		 UniProt
TreeGrafter		 PMID:12207017 PMID:25661590 GO_REF:0000118 NCBI chrNW_004624740:16,887,699...16,895,224
Ensembl chrNW_004624740:16,887,775...16,899,934 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:6,787,555...6,826,033
Ensembl chrNW_004624741:6,787,578...6,827,188 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624798:11,287,882...11,370,040
Ensembl chrNW_004624798:11,290,074...11,367,495 		JBrowse link
G Meiob meiosis specific with OB-fold enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:389,772...426,196
Ensembl chrNW_004624913:394,154...426,196 		JBrowse link
G Mlh1 mutL homolog 1 contributes_to ISO (PMID:11809883) HGNC PMID:11809883 NCBI chrNW_004624788:15,110,436...15,160,462
Ensembl chrNW_004624788:15,110,658...15,160,535 		JBrowse link
G Mms22l MMS22 like, DNA repair protein enables ISO (PMID:27797818) UniProt PMID:27797818 NCBI chrNW_004624810:8,035,864...8,168,555 JBrowse link
G Msh2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chrNW_004624738:28,780,596...28,861,523
Ensembl chrNW_004624738:28,780,614...28,861,704 		JBrowse link
G Msh3 mutS homolog 3 contributes_to ISO (PMID:11809883) HGNC PMID:11809883 NCBI chrNW_004624743:1,461,952...1,581,524
Ensembl chrNW_004624743:1,461,077...1,581,180 		JBrowse link
G Nabp1 nucleic acid binding protein 1 enables ISO (PMID:16533169) MGI PMID:16533169 NCBI chrNW_004624854:4,512,692...4,520,684 JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO (PMID:18449195), (PMID:19683501) UniProt PMID:18449195 PMID:19683501 NCBI chrNW_004624802:11,774,237...11,780,822
Ensembl chrNW_004624802:11,774,237...11,780,250 		JBrowse link
G Ncl nucleolin ISO RGD PMID:6311246 RGD:9693696 NCBI chrNW_004624843:4,620,501...4,630,521 JBrowse link
G Neil3 nei like DNA glycosylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624769:8,436,526...8,480,336
Ensembl chrNW_004624769:8,448,226...8,480,439 		JBrowse link
G Nol12 nucleolar protein 12 ISO RGD PMID:16430885 RGD:8553573 NCBI chrNW_004624752:10,191,778...10,197,856
Ensembl chrNW_004624752:10,190,769...10,197,808 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:5,495,770...5,535,907 JBrowse link
G Park7 Parkinsonism associated deglycase NOT|enables ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chrNW_004624818:3,900,917...3,915,457
Ensembl chrNW_004624818:3,900,917...3,911,042 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables ISO (PMID:8152927)
(PMID:15836633)		 UniProt
MGI		 PMID:8152927 PMID:15836633 NCBI chrNW_004624762:3,330,978...3,332,582 JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:24026233) MGI PMID:24026233 NCBI chrNW_004624904:1,553,253...1,579,212
Ensembl chrNW_004624904:1,555,635...1,578,982 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component contributes_to ISO (PMID:11809883) HGNC PMID:11809883 NCBI chrNW_004624740:31,315,121...31,345,137 JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624897:969,431...1,272,762
Ensembl chrNW_004624897:969,479...1,272,803 		JBrowse link
G Polr2g RNA polymerase II subunit G enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624926:1,228,590...1,230,943
Ensembl chrNW_004624926:1,228,602...1,230,943 		JBrowse link
G Polr2h RNA polymerase II, I and III subunit H enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:72,221,964...72,228,133
Ensembl chrNW_004624730:72,221,964...72,228,616 		JBrowse link
G Polr3c RNA polymerase III subunit C enables IEA Ensembl
InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624772:17,196,418...17,212,265
Ensembl chrNW_004624772:17,196,388...17,212,727 		JBrowse link
G Pou4f1 POU class 4 homeobox 1 enables ISO (PMID:8621561) UniProt PMID:8621561 NCBI chrNW_004624751:21,812,567...21,817,837
Ensembl chrNW_004624751:21,812,850...21,814,747 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:1561080 RGD:10045981 NCBI chrNW_004624828:7,750,419...7,762,645
Ensembl chrNW_004624828:7,750,323...7,762,589 		JBrowse link
G Pura purine rich element binding protein A enables ISO (PMID:10318844), (PMID:12933792) UniProt PMID:10318844 PMID:12933792 NCBI chrNW_004624743:32,878,677...32,888,650
Ensembl chrNW_004624743:32,884,552...32,885,517 		JBrowse link
G Purb purine rich element binding protein B enables ISO (PMID:10318844), (PMID:12933792) UniProt PMID:10318844 PMID:12933792 NCBI chrNW_004624740:7,398,481...7,406,923
Ensembl chrNW_004624740:7,398,481...7,399,434 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624731:3,510,430...3,698,859
Ensembl chrNW_004624731:3,597,779...3,697,138 		JBrowse link
G Rad51 RAD51 recombinase enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624804:7,957,175...7,983,078
Ensembl chrNW_004624804:7,957,253...7,983,619 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624860:1,627,606...1,643,569
Ensembl chrNW_004624860:1,627,765...1,643,667 		JBrowse link
G Rad51b RAD51 paralog B enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:32,560,579...33,173,357 JBrowse link
G Rad51d RAD51 paralog D enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:2,972,739...2,987,360
Ensembl chrNW_004624875:2,972,678...2,987,344 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein enables ISO (PMID:12370410) CAFA PMID:12370410 NCBI chrNW_004624735:9,123,599...9,153,373 JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:1,851,008...1,861,370
Ensembl chrNW_004624760:1,851,877...1,859,387 		JBrowse link
G Rnf138 ring finger protein 138 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624770:858,081...895,361
Ensembl chrNW_004624770:860,391...895,039 		JBrowse link
G Rpa1 replication protein A1 enables ISO (PMID:19010961), (PMID:8990123) UniProt
RGD		 PMID:8463251 PMID:8990123 PMID:19010961 RGD:2307012 NCBI chrNW_004624786:4,547,889...4,604,605
Ensembl chrNW_004624786:4,547,962...4,604,290 		JBrowse link
G Rpa2 replication protein A2 enables ISO (PMID:19010961) RGD
UniProt		 PMID:8463251 PMID:19010961 RGD:2307012 NCBI chrNW_004624764:11,737,234...11,763,862
Ensembl chrNW_004624764:11,736,129...11,764,080 		JBrowse link
G Rpa3 replication protein A3 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624813:5,248,794...5,252,264
Ensembl chrNW_004624813:5,247,033...5,253,413 		JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component enables ISO (PMID:18184592) UniProt PMID:18184592 NCBI chrNW_004624804:8,588,751...8,649,180 JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables ISO (PMID:29670289) UniProt PMID:29670289 NCBI chrNW_004624842:2,591,016...2,649,746
Ensembl chrNW_004624842:2,591,148...2,647,742 		JBrowse link
G Shoc1 shortage in chiasmata 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:23,220,294...23,332,094
Ensembl chrNW_004624760:23,249,730...23,332,198 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 enables ISO (PMID:20139420) MGI PMID:20139420 NCBI chrNW_004624758:7,267,024...7,318,930
Ensembl chrNW_004624758:7,268,474...7,317,919 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 enables ISO (PMID:20139420) MGI PMID:20139420 NCBI chrNW_004624730:38,145,101...38,178,788 JBrowse link
G Smc5 structural maintenance of chromosomes 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:2,697,764...2,803,501
Ensembl chrNW_004624736:2,700,161...2,803,439 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:612,758...689,191
Ensembl chrNW_004624738:614,402...681,430 		JBrowse link
G Spen spen family transcriptional repressor enables ISO (PMID:10451362) MGI PMID:10451362 NCBI chrNW_004624764:2,058,689...2,144,640
Ensembl chrNW_004624764:2,058,773...2,143,640 		JBrowse link
G Sprtn SprT-like N-terminal domain enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624775:18,382,718...18,397,411
Ensembl chrNW_004624775:18,384,276...18,397,399 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624765:21,746,633...21,771,234
Ensembl chrNW_004624765:21,746,794...21,761,258 		JBrowse link
G Ssbp2 single stranded DNA binding protein 2 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624743:1,911,567...2,186,107
Ensembl chrNW_004624743:1,909,980...2,186,132 		JBrowse link
G Ssbp3 single stranded DNA binding protein 3 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624934:161,323...313,621
Ensembl chrNW_004624934:161,054...311,937 		JBrowse link
G Ssbp4 single stranded DNA binding protein 4 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624908:1,648,150...1,658,374
Ensembl chrNW_004624908:1,649,878...1,658,374 		JBrowse link
G Stn1 STN1 subunit of CST complex enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624831:2,999,061...3,030,447
Ensembl chrNW_004624831:2,999,800...3,030,443 		JBrowse link
G Sub1 SUB1 regulator of transcription enables ISO (PMID:16605275)
(PMID:8062391)		 CAFA
UniProt		 PMID:8062391 PMID:16605275 NCBI chrNW_004624759:22,010,097...22,027,807
Ensembl chrNW_004624759:22,009,266...22,037,394 		JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:3,178,994...3,180,843
Ensembl chrNW_004624828:3,178,937...3,180,999 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:12,319,499...12,414,815
Ensembl chrNW_004624734:12,331,710...12,414,784 		JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:2,363,400...2,374,839
Ensembl chrNW_004624756:2,363,718...2,375,152 		JBrowse link
G Ten1 TEN1 subunit of CST complex enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624801:5,867,474...5,900,298
Ensembl chrNW_004624801:5,880,221...5,900,121 		JBrowse link
G Top1 DNA topoisomerase I enables ISO (PMID:8631794) CAFA PMID:8631794 NCBI chrNW_004624919:1,668,712...1,756,624
Ensembl chrNW_004624919:1,668,440...1,756,629 		JBrowse link
G Top3a DNA topoisomerase III alpha enables ISO (PMID:29290614) UniProt PMID:29290614 NCBI chrNW_004624849:3,159,432...3,196,235
Ensembl chrNW_004624849:3,159,810...3,194,860 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:2,431,270...2,433,010
Ensembl chrNW_004624730:2,431,999...2,432,959 		JBrowse link
G Tsn translin contributes_to
enables		 ISO
IEA		 RGD
InterPro		 PMID:9681436 GO_REF:0000002 RGD:634412 NCBI chrNW_004624732:23,436,957...23,447,402
Ensembl chrNW_004624732:23,436,949...23,447,453 		JBrowse link
G Tsnax translin associated factor X contributes_to ISO RGD PMID:9681436 RGD:634412 NCBI chrNW_004624775:18,224,737...18,264,462
Ensembl chrNW_004624775:18,227,072...18,263,894 		JBrowse link
G Twnk twinkle mtDNA helicase enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624831:592,475...597,388 JBrowse link
G Wdr48 WD repeat domain 48 enables ISO (PMID:27239033) UniProt PMID:27239033 NCBI chrNW_004624731:1,884,660...1,934,818
Ensembl chrNW_004624731:1,884,666...1,934,754 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624872:1,438,673...1,467,206
Ensembl chrNW_004624872:1,438,769...1,466,642 		JBrowse link
G Ybx1 Y-box binding protein 1 enables ISO (PMID:15282343) RGD
MGI		 PMID:15282343 PMID:17893273 RGD:2311253 NCBI chrNW_004624892:1,939,641...1,957,621
Ensembl chrNW_004624892:1,939,098...1,957,623 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad54l RAD54 like enables ISO (PMID:22705370) UniProt PMID:22705370 NCBI chrNW_004624906:2,164,711...2,194,262
Ensembl chrNW_004624906:2,165,780...2,193,764 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables ISO (PMID:22705370) UniProt PMID:22705370 NCBI chrNW_004624797:8,627,048...8,710,540
Ensembl chrNW_004624797:8,626,742...8,710,845 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 enables ISO (PMID:18974355)
(PMID:22705370)		 UniProt PMID:18974355 PMID:22705370 NCBI chrNW_004624823:8,645,340...8,708,039
Ensembl chrNW_004624823:8,644,826...8,706,591 		JBrowse link
G Tp53 tumor protein p53 enables ISO (PMID:8183576) UniProt PMID:8183576 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 enables ISO (PMID:21078962), (PMID:22704558), (PMID:22705370) UniProt PMID:21078962 PMID:22704558 PMID:22705370 NCBI chrNW_004624732:34,561,249...34,848,093
Ensembl chrNW_004624732:34,556,784...34,848,965 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:8127654 RGD:728600 NCBI chrNW_004624809:7,538,568...7,548,272 JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:8208614) MGI PMID:8208614 NCBI chrNW_004624904:1,553,253...1,579,212
Ensembl chrNW_004624904:1,555,635...1,578,982 		JBrowse link
G Pcbp3 poly(rC) binding protein 3 enables ISO (PMID:22521865) MGI PMID:22521865 NCBI chrNW_004624745:30,866,883...31,104,845
Ensembl chrNW_004624745:31,037,384...31,104,250 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chrNW_004624802:11,774,237...11,780,822
Ensembl chrNW_004624802:11,774,237...11,780,250 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chrNW_004624811:765,338...782,203
Ensembl chrNW_004624811:764,940...782,198 		JBrowse link
G Blm BLM RecQ like helicase enables ISO (PMID:17878217) GO_Central PMID:17878217 NCBI chrNW_004624768:17,422,267...17,522,894
Ensembl chrNW_004624768:17,421,291...17,522,799 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:1703006 RGD:10045979 NCBI chrNW_004624904:2,314,197...2,320,900
Ensembl chrNW_004624904:2,314,249...2,318,791 		JBrowse link
G Recql RecQ like helicase enables ISO (PMID:19177149) GO_Central PMID:19177149 NCBI chrNW_004624752:17,183,624...17,220,954
Ensembl chrNW_004624752:17,185,129...17,220,707 		JBrowse link
G Recql4 RecQ like helicase 4 enables ISO (PMID:19177149) GO_Central PMID:19177149 NCBI chrNW_004624735:12,345,326...12,351,783
Ensembl chrNW_004624735:12,345,844...12,351,637 		JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:8493094) MGI PMID:8493094 NCBI chrNW_004624767:18,038,559...18,065,745
Ensembl chrNW_004624767:18,036,650...18,065,742 		JBrowse link
G Pot1 protection of telomeres 1 enables ISO (PMID:19734539) BHF-UCL PMID:19734539 NCBI chrNW_004624783:11,138,222...11,223,329
Ensembl chrNW_004624783:11,138,303...11,223,044 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CST telomere replication complex component 1 enables ISO (PMID:22763445) BHF-UCL PMID:22763445 NCBI chrNW_004624786:10,795,848...10,819,029
Ensembl chrNW_004624786:10,795,193...10,819,613 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:23935072) BHF-UCL PMID:23935072 NCBI chrNW_004624904:2,314,197...2,320,900
Ensembl chrNW_004624904:2,314,249...2,318,791 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chrNW_004624739:4,343,164...4,353,123
Ensembl chrNW_004624739:4,343,246...4,352,066 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chrNW_004624802:11,774,237...11,780,822
Ensembl chrNW_004624802:11,774,237...11,780,250 		JBrowse link
G Pot1 protection of telomeres 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624783:11,138,222...11,223,329
Ensembl chrNW_004624783:11,138,303...11,223,044 		JBrowse link
G Rpa1 replication protein A1 enables ISO (PMID:26041456)
(PMID:16973897), (PMID:24747047)		 BHF-UCL PMID:16973897 PMID:24747047 PMID:26041456 NCBI chrNW_004624786:4,547,889...4,604,605
Ensembl chrNW_004624786:4,547,962...4,604,290 		JBrowse link
G Rpa2 replication protein A2 enables ISO (PMID:24747047) BHF-UCL PMID:24747047 NCBI chrNW_004624764:11,737,234...11,763,862
Ensembl chrNW_004624764:11,736,129...11,764,080 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624744:18,120,677...18,156,920
Ensembl chrNW_004624744:18,121,687...18,156,989 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:16,992,049...17,020,809
Ensembl chrNW_004624746:16,992,110...17,019,857 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chrNW_004624735:12,536,818...12,562,643
Ensembl chrNW_004624735:12,537,128...12,562,644 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables ISO (PMID:15836633) MGI PMID:15836633 NCBI chrNW_004624762:3,330,978...3,332,582 JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624739:4,343,164...4,353,123
Ensembl chrNW_004624739:4,343,246...4,352,066 		JBrowse link
G Pot1 protection of telomeres 1 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624783:11,138,222...11,223,329
Ensembl chrNW_004624783:11,138,303...11,223,044 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:39,445,083...39,544,415
Ensembl chrNW_004624733:39,447,461...39,544,409 		JBrowse link
G Stn1 STN1 subunit of CST complex enables IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004624831:2,999,061...3,030,447
Ensembl chrNW_004624831:2,999,800...3,030,443 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 16462
    binding 14676
      organic cyclic compound binding 4642
        nucleic acid binding 2866
          DNA binding 1817
            single-stranded DNA binding 118
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 13
paths to the root