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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699


show annotations for term's descendants           Sort by:
single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2200002D01Rik RIKEN cDNA 2200002D01 gene NOT|enables ISO (PMID:11080599) HGNC-UCL PMID:11080599 NCBI chr 7:28,946,946...28,947,892
Ensembl chr 7:28,945,986...28,947,891 		JBrowse link
G Alyref Aly/REF export factor enables IDA (PMID:10786854) MGI PMID:10786854 NCBI chr11:120,485,330...120,489,342
Ensembl chr11:120,482,947...120,489,191 		JBrowse link
G Alyref2 Aly/REF export factor 2 enables IDA (PMID:10786854) MGI PMID:10786854 NCBI chr 1:171,331,046...171,332,318
Ensembl chr 1:171,331,046...171,332,324 		JBrowse link
G Anxa1 annexin A1 contributes_to
enables		 ISO RGD
GO_Central		 PMID:20655937 GO_REF:0000096 RGD:7421590 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Aptx aprataxin enables IBA GO_Central GO_REF:0000033 NCBI chr 4:40,682,078...40,703,206
Ensembl chr 4:40,682,382...40,703,194 		JBrowse link
G Bivm basic, immunoglobulin-like variable motif containing enables IBA GO_Central GO_REF:0000033 NCBI chr 1:44,158,032...44,183,931
Ensembl chr 1:44,158,117...44,183,930 		JBrowse link
G Blm Bloom syndrome, RecQ like helicase enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Brca2 breast cancer 2, early onset enables ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:12228710 GO_REF:0000096 GO_REF:0000107 GO_REF:0000119 RGD:632363 NCBI chr 5:150,445,759...150,493,612
Ensembl chr 5:150,446,095...150,493,794 		JBrowse link
G Cdc45 cell division cycle 45 enables IBA GO_Central GO_REF:0000033 NCBI chr16:18,599,202...18,632,371
Ensembl chr16:18,599,197...18,630,737 		JBrowse link
G Cnbp cellular nucleic acid binding protein enables ISO RGD
GO_Central		 PMID:7788528 GO_REF:0000096 RGD:632384 NCBI chr 6:87,819,597...87,828,088
Ensembl chr 6:87,819,597...87,828,088 		JBrowse link
G Cry2 cryptochrome circadian regulator 2 enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:92,233,991...92,264,426
Ensembl chr 2:92,233,991...92,264,388 		JBrowse link
G Ctc1 CTS telomere maintenance complex component 1 enables IBA
IDA		 (PMID:19119139) GO_Central
UniProt		 PMID:19119139 GO_REF:0000033 NCBI chr11:68,906,014...68,927,299
Ensembl chr11:68,906,737...68,927,299 		JBrowse link
G Ddx11 DEAD/H box helicase 11 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr17:66,430,508...66,459,169
Ensembl chr17:66,430,515...66,459,169 		JBrowse link
G Dhx36 DEAH-box helicase 36 enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 3:62,375,436...62,414,464
Ensembl chr 3:62,375,434...62,414,425 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:153,331,506...153,363,464
Ensembl chr 1:153,331,504...153,363,406 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 enables ISS
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr15:79,445,698...79,489,362
Ensembl chr15:79,445,698...79,489,310 		JBrowse link
G Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 enables IBA
ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 7:19,079,016...19,090,449
Ensembl chr 7:19,078,703...19,090,449 		JBrowse link
G Ercc4 excision repair cross-complementing rodent repair deficiency, complementation group 4 enables IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr16:12,927,600...12,969,873
Ensembl chr16:12,927,548...12,968,481 		JBrowse link
G Ercc5 excision repair cross-complementing rodent repair deficiency, complementation group 5 enables IBA
IEA
ISO		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000119 NCBI chr 1:44,184,084...44,220,399
Ensembl chr 1:44,186,904...44,220,420 		JBrowse link
G Fam111a family with sequence similarity 111, member A enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr19:12,550,874...12,567,133
Ensembl chr19:12,523,104...12,567,132 		JBrowse link
G Fbh1 F-box DNA helicase 1 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:11,747,384...11,782,396
Ensembl chr 2:11,747,384...11,782,393 		JBrowse link
G Fubp3 far upstream element (FUSE) binding protein 3 enables ISO MGI GO_REF:0000008 NCBI chr 2:31,462,655...31,507,538
Ensembl chr 2:31,462,663...31,507,538 		JBrowse link
G Hmces 5-hydroxymethylcytosine (hmC) binding, ES cell specific enables IDA
ISO		 (PMID:31806351) UniProt
GO_Central		 PMID:31806351 GO_REF:0000119 NCBI chr 6:87,890,889...87,913,603
Ensembl chr 6:87,890,917...87,913,611 		JBrowse link
G Hmgb1 high mobility group box 1 enables ISO RGD
GO_Central		 PMID:11024186 GO_REF:0000096 RGD:2316830 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Hmgb2 high mobility group box 2 enables ISO (PMID:11754747) AgBase PMID:11754747 NCBI chr 8:57,964,877...57,969,033
Ensembl chr 8:57,964,941...57,969,033 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO
ISS		 GO_Central
HGNC-UCL		 GO_REF:0000024 GO_REF:0000119 NCBI chr15:103,148,840...103,155,119
Ensembl chr15:103,148,859...103,155,119 		JBrowse link
G Hnrnpdl heterogeneous nuclear ribonucleoprotein D-like enables ISO GO_Central GO_REF:0000119 NCBI chr 5:100,181,436...100,187,769
Ensembl chr 5:100,181,436...100,187,523 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K enables ISO RGD
GO_Central		 PMID:15361071 GO_REF:0000096 RGD:10002777 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:178,148,673...178,170,063
Ensembl chr 1:178,148,673...178,165,362 		JBrowse link
G Hrob homologous recombination factor with OB-fold enables IDA (PMID:31467087) UniProt PMID:31467087 NCBI chr11:102,139,677...102,156,009
Ensembl chr11:102,139,708...102,156,013 		JBrowse link
G Ighm immunoglobulin heavy constant mu contributes_to ISO GO_Central GO_REF:0000119 NCBI chr12:113,382,446...113,386,350
Ensembl chr12:113,382,178...113,386,350 		JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables ISO GO_Central GO_REF:0000119 NCBI chr19:3,309,076...3,333,011
Ensembl chr19:3,309,076...3,333,017 		JBrowse link
G Jchain immunoglobulin joining chain contributes_to
enables		 ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:88,667,663...88,675,667
Ensembl chr 5:88,667,668...88,675,750 		JBrowse link
G Lonp1 lon peptidase 1, mitochondrial enables IBA
IDA		 (PMID:12657466) GO_Central
MGI		 PMID:12657466 GO_REF:0000033 NCBI chr17:56,921,297...56,933,903
Ensembl chr17:56,921,297...56,933,887 		JBrowse link
G Lrpprc leucine-rich PPR-motif containing enables IDA (PMID:12071956) MGI PMID:12071956 NCBI chr17:85,012,675...85,098,214
Ensembl chr17:85,012,675...85,098,217 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor enables IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 2:4,995,535...5,017,602
Ensembl chr 2:4,994,525...5,017,602 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 enables IBA GO_Central GO_REF:0000033 NCBI chr 6:88,860,456...88,875,762
Ensembl chr 6:88,860,456...88,875,762 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 enables IBA GO_Central GO_REF:0000033 NCBI chr 1:20,873,188...20,890,536
Ensembl chr 1:20,873,192...20,890,536 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 enables
contributes_to		 IPI
ISO
IMP		 (PMID:15917436)
(PMID:10567526), (PMID:12207017)		 MGI
GO_Central
UniProt		 PMID:10567526 PMID:12207017 PMID:15917436 GO_REF:0000119 NCBI chr16:15,441,761...15,455,264
Ensembl chr16:15,441,761...15,455,264 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 enables IBA GO_Central GO_REF:0000033 NCBI chr 8:75,836,096...75,855,067
Ensembl chr 8:75,836,197...75,855,067 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 enables
contributes_to		 IPI
ISO
IDA
IMP		 (PMID:15917436)
(PMID:12207017)
(PMID:10567526)		 MGI
GO_Central
UniProt		 PMID:10567526 PMID:12207017 PMID:15917436 GO_REF:0000119 NCBI chr 1:128,259,312...128,287,442
Ensembl chr 1:128,259,327...128,287,401 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 enables
contributes_to		 IPI
ISO
IMP		 (PMID:15917436)
(PMID:12207017)		 MGI
GO_Central
UniProt		 PMID:12207017 PMID:15917436 GO_REF:0000119 NCBI chr 5:138,162,845...138,170,675
Ensembl chr 5:138,162,845...138,170,684 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor enables IBA GO_Central GO_REF:0000033 NCBI chr 2:132,658,061...132,686,117
Ensembl chr 2:132,658,061...132,686,117 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor enables IBA GO_Central GO_REF:0000033 NCBI chr10:53,412,411...53,507,251
Ensembl chr10:53,412,411...53,506,535 		JBrowse link
G Meiob meiosis specific with OB domains enables IBA
IDA		 (PMID:24068956), (PMID:24240703) GO_Central
UniProt		 PMID:24068956 PMID:24240703 GO_REF:0000033 NCBI chr17:25,023,275...25,058,762
Ensembl chr17:25,023,263...25,058,762 		JBrowse link
G Mlh1 mutL homolog 1 enables
contributes_to		 IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859 		JBrowse link
G Mms22l MMS22-like, DNA repair protein enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:24,496,451...24,602,950
Ensembl chr 4:24,496,451...24,602,950 		JBrowse link
G Msbp1 minisatellite binding protein 1 enables IDA (PMID:1754375) MGI PMID:1754375
G Msh2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141 		JBrowse link
G Msh3 mutS homolog 3 contributes_to ISO GO_Central GO_REF:0000119 NCBI chr13:92,348,387...92,491,515
Ensembl chr13:92,348,380...92,491,511 		JBrowse link
G Nabp1 nucleic acid binding protein 1 enables IDA
ISS		 (PMID:16533169) MGI
UniProt		 PMID:16533169 GO_REF:0000024 NCBI chr 1:51,504,127...51,517,634
Ensembl chr 1:51,505,021...51,517,584 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr10:128,237,263...128,247,426
Ensembl chr10:128,237,264...128,247,361 		JBrowse link
G Ncl nucleolin enables ISO RGD
GO_Central		 PMID:6311246 GO_REF:0000096 RGD:9693696 NCBI chr 1:86,272,441...86,287,177
Ensembl chr 1:86,272,441...86,287,122 		JBrowse link
G Neil3 nei like 3 (E. coli) enables IDA
ISO		 (PMID:20185759) UniProt
GO_Central		 PMID:20185759 GO_REF:0000119 NCBI chr 8:54,039,902...54,092,100
Ensembl chr 8:54,039,902...54,092,100 		JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 enables ISO RGD
GO_Central		 PMID:12010125 GO_REF:0000096 RGD:633207 NCBI chr11:93,849,751...93,859,341
Ensembl chr11:93,847,805...93,859,347 		JBrowse link
G Nol12 nucleolar protein 12 enables ISO
IEA		 RGD
Ensembl
GO_Central		 PMID:16430885 GO_REF:0000096 GO_REF:0000107 RGD:8553573 NCBI chr15:78,819,151...78,826,111
Ensembl chr15:78,819,133...78,827,838 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 enables ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000096 NCBI chr 1:131,838,196...131,864,059
Ensembl chr 1:131,838,272...131,864,059 		JBrowse link
G Park7 Parkinson disease (autosomal recessive, early onset) 7 NOT|enables ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chr 4:150,981,590...150,994,378
Ensembl chr 4:150,981,590...150,998,894 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables IDA
IBA
ISO		 (PMID:15836633) MGI
GO_Central		 PMID:15836633 GO_REF:0000033 GO_REF:0000119 NCBI chr 6:86,501,462...86,503,171
Ensembl chr 6:86,501,474...86,503,303 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables IDA
IBA		 (PMID:24026233) MGI
GO_Central		 PMID:24026233 GO_REF:0000033 NCBI chr15:102,378,974...102,408,503
Ensembl chr15:102,378,974...102,408,496 		JBrowse link
G Pms2 PMS1 homolog2, mismatch repair system component contributes_to
enables		 ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 5:143,846,379...143,922,538
Ensembl chr 5:143,846,782...143,870,786
Ensembl chr 5:143,846,782...143,870,786 		JBrowse link
G Pola1 polymerase (DNA directed), alpha 1 enables IBA GO_Central GO_REF:0000033 NCBI chr  X:92,348,372...92,675,993
Ensembl chr  X:92,348,373...92,675,761 		JBrowse link
G Polr2g polymerase (RNA) II (DNA directed) polypeptide G enables IBA GO_Central GO_REF:0000033 NCBI chr19:8,770,493...8,775,921
Ensembl chr19:8,770,491...8,775,941 		JBrowse link
G Polr2h polymerase (RNA) II (DNA directed) polypeptide H enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr16:20,536,552...20,541,015
Ensembl chr16:20,536,415...20,541,017 		JBrowse link
G Polr3c polymerase (RNA) III (DNA directed) polypeptide C enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 3:96,618,836...96,634,803
Ensembl chr 3:96,618,806...96,634,944 		JBrowse link
G Pou4f1 POU domain, class 4, transcription factor 1 enables IDA (PMID:8621561) UniProt PMID:8621561 NCBI chr14:104,699,111...104,705,554
Ensembl chr14:104,699,112...104,705,435 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 enables ISO RGD
GO_Central		 PMID:1561080 GO_REF:0000096 RGD:10045981 NCBI chr10:79,690,502...79,700,269
Ensembl chr10:79,690,261...79,700,605 		JBrowse link
G Pura purine rich element binding protein A enables IDA (PMID:10318844), (PMID:12933792) UniProt PMID:10318844 PMID:12933792 NCBI chr18:36,413,614...36,434,575
Ensembl chr18:36,414,150...36,425,588 		JBrowse link
G Purb purine rich element binding protein B enables ISO
IDA		 (PMID:10318844), (PMID:12933792) GO_Central
UniProt		 PMID:10318844 PMID:12933792 GO_REF:0000096 NCBI chr11:6,417,599...6,426,076
Ensembl chr11:6,417,599...6,425,917 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase enables IEA InterPro GO_REF:0000002 NCBI chr 6:112,596,812...112,673,650
Ensembl chr 6:112,596,811...112,673,647 		JBrowse link
G Rad51 RAD51 recombinase enables IDA
IBA
ISO		 (PMID:22778135) MGI
GO_Central		 PMID:22778135 GO_REF:0000033 GO_REF:0000119 NCBI chr 2:118,943,295...118,966,554
Ensembl chr 2:118,943,274...118,977,926 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 enables ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 6:126,900,378...126,916,664
Ensembl chr 6:126,900,013...126,916,550 		JBrowse link
G Rad51b RAD51 paralog B enables IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr12:79,344,032...79,895,034
Ensembl chr12:79,344,056...79,861,464 		JBrowse link
G Rad51d RAD51 paralog D enables IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr11:82,762,786...82,781,571
Ensembl chr11:82,767,260...82,781,440 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:119,878,781...119,899,789
Ensembl chr 6:119,879,659...119,899,789 		JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked enables ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr  X:138,381,116...138,455,333
Ensembl chr  X:138,381,116...138,455,331 		JBrowse link
G Rexo4 REX4, 3'-5' exonuclease enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:26,843,575...26,854,398
Ensembl chr 2:26,843,575...26,854,398 		JBrowse link
G Rnf138 ring finger protein 138 enables IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr18:21,134,202...21,161,281
Ensembl chr18:21,134,398...21,161,281 		JBrowse link
G Rnf138rt1 ring finger protein 138, retrogene 1 enables IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr  X:162,543,135...162,544,328
Ensembl chr  X:162,543,135...162,544,325 		JBrowse link
G Rpa1 replication protein A1 enables ISO
ISS		 RGD
UniProt
GO_Central		 PMID:8463251 GO_REF:0000024 GO_REF:0000096 GO_REF:0000119 RGD:2307012 NCBI chr11:75,191,085...75,239,478
Ensembl chr11:75,188,992...75,239,150 		JBrowse link
G Rpa2 replication protein A2 enables ISO
IBA
ISS		 RGD
GO_Central
UniProt		 PMID:8463251 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:2307012 NCBI chr 4:132,495,671...132,506,057
Ensembl chr 4:132,495,643...132,506,063 		JBrowse link
G Rpa3 replication protein A3 enables IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:8,255,936...8,259,141
Ensembl chr 6:8,255,936...8,259,173 		JBrowse link
G Rtf1 RTF1, Paf1/RNA polymerase II complex component enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:119,505,549...119,565,888
Ensembl chr 2:119,505,549...119,565,888 		JBrowse link
G Samhd1 SAM domain and HD domain, 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:156,939,454...156,977,016
Ensembl chr 2:156,939,453...156,977,185 		JBrowse link
G Setmar SET domain without mariner transposase fusion enables ISO GO_Central GO_REF:0000119 NCBI chr 6:108,042,006...108,054,088
Ensembl chr 6:108,042,006...108,054,083 		JBrowse link
G Shoc1 shortage in chiasmata 1 enables IBA
ISS
ISO		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 4:59,041,984...59,138,983
Ensembl chr 4:59,043,753...59,138,983 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 enables IDA (PMID:20139420) MGI PMID:20139420 NCBI chr 4:52,438,966...52,488,365
Ensembl chr 4:52,439,243...52,488,260 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 enables IDA (PMID:20139420) MGI PMID:20139420 NCBI chr 3:68,912,071...68,941,956
Ensembl chr 3:68,912,071...68,941,956 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 enables IBA GO_Central GO_REF:0000033 NCBI chr19:23,183,817...23,251,286
Ensembl chr19:23,183,815...23,251,261 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 enables IBA GO_Central GO_REF:0000033 NCBI chr12:11,315,887...11,369,786
Ensembl chr12:11,315,887...11,369,786 		JBrowse link
G Smug1 single-strand selective monofunctional uracil DNA glycosylase enables ISA (PMID:12718543) MGI PMID:12718543 NCBI chr15:103,061,717...103,077,360
Ensembl chr15:103,061,717...103,075,519 		JBrowse link
G Spen spen family transcription repressor enables IDA (PMID:10451362) MGI PMID:10451362 NCBI chr 4:141,195,199...141,265,955
Ensembl chr 4:141,195,201...141,265,908 		JBrowse link
G Sprtn SprT-like N-terminal domain enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 8:125,624,612...125,632,903
Ensembl chr 8:125,624,625...125,632,900 		JBrowse link
G Ssbp1 single-stranded DNA binding protein 1 enables ISO
IBA
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 6:40,448,302...40,458,757
Ensembl chr 6:40,448,286...40,461,634 		JBrowse link
G Ssbp2 single-stranded DNA binding protein 2 enables IEA InterPro GO_REF:0000002 NCBI chr13:91,608,449...91,854,299
Ensembl chr13:91,608,402...91,851,548 		JBrowse link
G Ssbp3 single-stranded DNA binding protein 3 enables ISO (PMID:10524251) MGI PMID:10524251 NCBI chr 4:106,768,667...106,906,891
Ensembl chr 4:106,767,898...106,906,891 		JBrowse link
G Stn1 STN1, CST complex subunit enables IDA (PMID:19119139) UniProt PMID:19119139 NCBI chr19:47,489,470...47,534,284
Ensembl chr19:47,489,472...47,525,946 		JBrowse link
G Sub1 SUB1 homolog, transcriptional regulator enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr15:11,981,422...11,996,091
Ensembl chr15:11,981,425...11,997,069 		JBrowse link
G Swsap1 SWIM type zinc finger 7 associated protein 1 enables IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr 9:21,867,049...21,869,566
Ensembl chr 9:21,867,051...21,869,560 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 enables IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr12:99,850,767...99,921,482
Ensembl chr12:99,850,776...99,921,478 		JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 enables IBA
ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr13:25,015,642...25,026,136
Ensembl chr13:25,015,662...25,026,136 		JBrowse link
G Ten1 TEN1 telomerase capping complex subunit enables IEA InterPro GO_REF:0000002 NCBI chr11:116,089,681...116,106,144
Ensembl chr11:116,089,681...116,106,144 		JBrowse link
G Top1 topoisomerase (DNA) I enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:160,487,901...160,564,684
Ensembl chr 2:160,487,808...160,564,684 		JBrowse link
G Top3a topoisomerase (DNA) III alpha enables IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:60,629,014...60,668,099
Ensembl chr11:60,630,884...60,668,191 		JBrowse link
G Trex1 three prime repair exonuclease 1 enables IDA (PMID:17293595), (PMID:17355961) MGI PMID:17293595 PMID:17355961 NCBI chr 9:108,887,000...108,888,791
Ensembl chr 9:108,887,001...108,888,802 		JBrowse link
G Tsn translin enables
contributes_to		 IEA
ISO		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000096 NCBI chr 1:118,226,244...118,239,463
Ensembl chr 1:118,222,508...118,239,469 		JBrowse link
G Tsnax translin-associated factor X contributes_to
enables		 ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000096 GO_REF:0000107 NCBI chr 8:125,739,780...125,760,947
Ensembl chr 8:125,739,736...125,760,931 		JBrowse link
G Twnk twinkle mtDNA helicase enables ISS
ISO
IBA		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr19:44,994,102...45,001,203
Ensembl chr19:44,994,102...45,001,201 		JBrowse link
G Wdr48 WD repeat domain 48 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 9:119,723,961...119,755,652
Ensembl chr 9:119,723,944...119,755,653 		JBrowse link
G Xpc xeroderma pigmentosum, complementation group C enables IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 6:91,466,287...91,492,870
Ensembl chr 6:91,466,287...91,492,870 		JBrowse link
G Ybx1 Y box protein 1 enables ISO
IDA		 (PMID:15282343) RGD
GO_Central
MGI		 PMID:15282343 PMID:17893273 GO_REF:0000096 RGD:2311253 NCBI chr 4:119,134,524...119,153,462
Ensembl chr 4:119,135,178...119,151,801 		JBrowse link
G Ybx3 Y box protein 3 enables ISO RGD
GO_Central		 PMID:8029009 GO_REF:0000096 RGD:632638 NCBI chr 6:131,341,821...131,365,413
Ensembl chr 6:131,341,818...131,365,439 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad54l RAD54 like (S. cerevisiae) enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:115,951,458...115,980,875
Ensembl chr 4:115,951,461...115,980,887 		JBrowse link
G Smarca1 SNF2 related chromatin remodeling ATPase 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr  X:46,898,247...46,981,490
Ensembl chr  X:46,898,245...46,981,851 		JBrowse link
G Smarcal1 SNF2 related chromatin remodeling ATPase like 1 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:72,575,593...72,675,949
Ensembl chr 1:72,622,410...72,672,293 		JBrowse link
G Trp53 transformation related protein 53 enables ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Zranb3 zinc finger, RAN-binding domain containing 3 enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 1:127,881,916...128,030,799
Ensembl chr 1:127,881,921...128,030,784 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K enables ISO RGD
GO_Central		 PMID:8127654 GO_REF:0000096 RGD:728600 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables IDA (PMID:8208614) MGI PMID:8208614 NCBI chr15:102,378,974...102,408,503
Ensembl chr15:102,378,974...102,408,496 		JBrowse link
G Pcbp3 poly(rC) binding protein 3 enables IDA (PMID:22521865) MGI PMID:22521865 NCBI chr10:76,597,688...76,797,951
Ensembl chr10:76,597,691...76,797,721 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nabp2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr10:128,237,263...128,247,426
Ensembl chr10:128,237,264...128,247,361 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 enables ISO RGD
GO_Central		 PMID:20655937 GO_REF:0000096 RGD:7421590 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Blm Bloom syndrome, RecQ like helicase enables ISO (PMID:17878217) GO_Central PMID:17878217 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO RGD
GO_Central		 PMID:1703006 GO_REF:0000096 RGD:10045979 NCBI chr15:103,148,840...103,155,119
Ensembl chr15:103,148,859...103,155,119 		JBrowse link
G Recql RecQ protein-like enables IEA Ensembl GO_REF:0000107 NCBI chr 6:142,296,068...142,332,802
Ensembl chr 6:142,296,068...142,332,813 		JBrowse link
G Recql4 RecQ protein-like 4 enables ISO (PMID:19177149) GO_Central PMID:19177149 NCBI chr15:76,587,753...76,594,820
Ensembl chr15:76,587,753...76,594,748 		JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ighmbp2 immunoglobulin mu DNA binding protein 2 enables IDA (PMID:8493094) MGI PMID:8493094 NCBI chr19:3,309,076...3,333,011
Ensembl chr19:3,309,076...3,333,017 		JBrowse link
G Pot1a protection of telomeres 1A enables ISO GO_Central GO_REF:0000119 NCBI chr 6:25,743,939...25,809,280
Ensembl chr 6:25,743,736...25,809,245 		JBrowse link
G Pot1b protection of telomeres 1B enables ISO GO_Central GO_REF:0000119 NCBI chr17:55,958,190...56,019,647
Ensembl chr17:55,958,951...56,019,628 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctc1 CTS telomere maintenance complex component 1 enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr11:68,906,014...68,927,299
Ensembl chr11:68,906,737...68,927,299 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 enables ISO GO_Central GO_REF:0000119 NCBI chr15:103,148,840...103,155,119
Ensembl chr15:103,148,859...103,155,119 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO GO_Central GO_REF:0000096 NCBI chr 6:51,437,414...51,448,054
Ensembl chr 6:51,437,912...51,446,874 		JBrowse link
G Nabp2 nucleic acid binding protein 2 enables ISO GO_Central GO_REF:0000119 NCBI chr10:128,237,263...128,247,426
Ensembl chr10:128,237,264...128,247,361 		JBrowse link
G Pot1a protection of telomeres 1A enables IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 6:25,743,939...25,809,280
Ensembl chr 6:25,743,736...25,809,245 		JBrowse link
G Pot1b protection of telomeres 1B enables IBA
ISO		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr17:55,958,190...56,019,647
Ensembl chr17:55,958,951...56,019,628 		JBrowse link
G Rpa1 replication protein A1 enables ISO GO_Central GO_REF:0000119 NCBI chr11:75,191,085...75,239,478
Ensembl chr11:75,188,992...75,239,150 		JBrowse link
G Rpa2 replication protein A2 enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 4:132,495,671...132,506,057
Ensembl chr 4:132,495,643...132,506,063 		JBrowse link
G Terf1 telomeric repeat binding factor 1 enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 1:15,875,634...15,914,283
Ensembl chr 1:15,875,870...15,914,276 		JBrowse link
G Terf2 telomeric repeat binding factor 2 enables IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:107,796,032...107,823,180
Ensembl chr 8:107,796,032...107,823,179 		JBrowse link
G Terf2ip telomeric repeat binding factor 2, interacting protein enables ISO
IEA		 GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:112,737,991...112,747,160
Ensembl chr 8:112,738,030...112,747,160 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsf1 heat shock factor 1 enables ISO RGD
GO_Central		 PMID:21512157 GO_REF:0000096 RGD:10402944 NCBI chr15:76,361,562...76,385,355
Ensembl chr15:76,361,622...76,386,113 		JBrowse link
G Pcbp1 poly(rC) binding protein 1 enables IDA (PMID:15836633) MGI PMID:15836633 NCBI chr 6:86,501,462...86,503,171
Ensembl chr 6:86,501,474...86,503,303 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO
IBA
ISS		 GO_Central
HGNC-UCL
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 NCBI chr 6:51,437,414...51,448,054
Ensembl chr 6:51,437,912...51,446,874 		JBrowse link
G Pot1a protection of telomeres 1A enables IDA
ISO
ISS		 (PMID:17053789) MGI
GO_Central
UniProt		 PMID:17053789 GO_REF:0000024 GO_REF:0000119 NCBI chr 6:25,743,939...25,809,280
Ensembl chr 6:25,743,736...25,809,245 		JBrowse link
G Pot1b protection of telomeres 1B enables IDA
ISO		 (PMID:17053789) MGI
GO_Central		 PMID:17053789 GO_REF:0000119 NCBI chr17:55,958,190...56,019,647
Ensembl chr17:55,958,951...56,019,628 		JBrowse link
G Rad50 RAD50 double strand break repair protein enables IBA GO_Central GO_REF:0000033 NCBI chr11:53,540,346...53,598,146
Ensembl chr11:53,540,346...53,598,146 		JBrowse link
G Rpa1 replication protein A1 enables IBA GO_Central GO_REF:0000033 NCBI chr11:75,191,085...75,239,478
Ensembl chr11:75,188,992...75,239,150 		JBrowse link
G Stn1 STN1, CST complex subunit enables ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr19:47,489,470...47,534,284
Ensembl chr19:47,489,472...47,525,946 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28792
    binding 17604
      organic cyclic compound binding 5876
        nucleic acid binding 3753
          DNA binding 2355
            single-stranded DNA binding 128
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 3
              sequence-specific single stranded DNA binding + 15
paths to the root