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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699

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single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor enables ISO (PMID:10786854) MGI PMID:10786854 NCBI chr16:73,761,763...73,765,560
Ensembl chr16:73,757,072...73,765,531 		JBrowse link
G ANXA1 annexin A1 contributes_to ISO RGD PMID:10548514 PMID:20655937 RGD:2306916 RGD:7421590 NCBI chr12:84,207,818...84,226,438
Ensembl chr12:84,207,820...84,226,562 		JBrowse link
G APTX aprataxin enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:47,239,094...47,346,528
Ensembl chr12:47,258,798...47,287,102 		JBrowse link
G BIVM basic, immunoglobulin-like variable motif containing enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:81,360,868...81,401,813
Ensembl chr 3:81,368,637...81,403,182 		JBrowse link
G BLM BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRCA2 BRCA2 DNA repair associated enables ISO
IEA		 RGD
Ensembl		 PMID:12228710 GO_REF:0000107 RGD:632363 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G CDC45 cell division cycle 45 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:6,232,610...6,275,743
Ensembl chr19:6,231,591...6,275,294 		JBrowse link
G CNBP CCHC-type zinc finger nucleic acid binding protein ISO RGD PMID:7788528 RGD:632384 NCBI chr22:51,877,171...51,891,912
Ensembl chr22:51,876,545...51,890,946 		JBrowse link
G CRY2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:19,459,734...19,498,807
Ensembl chr 1:19,472,231...19,498,790 		JBrowse link
G CTC1 CST telomere replication complex component 1 enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:7,594,493...7,618,202
Ensembl chr16:7,594,219...7,615,754 		JBrowse link
G CUNH19orf33 chromosome unknown C19orf33 homolog NOT|enables ISO (PMID:11080599) HGNC-UCL PMID:11080599 NCBI chr 6:32,947,469...32,948,721
Ensembl chr 6:32,947,820...32,949,288 		JBrowse link
G DDX11 DEAD/H-box helicase 11 enables IEA Ensembl GO_REF:0000107 NCBI chr11:9,260,206...9,290,308
Ensembl chr11:9,260,239...9,291,162 		JBrowse link
G DHX36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chr15:36,387,242...36,438,133
Ensembl chr15:36,387,228...36,437,606 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr25:46,485,602...46,534,046
Ensembl chr25:46,485,427...46,518,406 		JBrowse link
G DMC1 DNA meiotic recombinase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:38,857,067...38,900,177
Ensembl chr 6:38,854,803...38,872,967 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit enables IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:13,378,282...13,410,307
Ensembl chr 5:13,378,401...13,406,541 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G FAM111A FAM111 trypsin like peptidase A enables IEA Ensembl GO_REF:0000107 NCBI chr 1:14,405,991...14,412,170 JBrowse link
G FBH1 F-box DNA helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:6,001,071...6,047,512
Ensembl chr 9:6,013,908...6,047,753 		JBrowse link
G FUBP3 far upstream element binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chr12:7,504,264...7,563,089
Ensembl chr12:7,504,295...7,563,040 		JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr22:51,759,776...51,785,902
Ensembl chr22:51,759,715...51,785,987 		JBrowse link
G HMGB1 high mobility group box 1 ISO RGD PMID:11024186 RGD:2316830 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HMGB2 high mobility group box 2 enables ISO (PMID:11754747) AgBase PMID:11754747 NCBI chr 7:119,440,089...119,442,806
Ensembl chr 7:119,440,468...119,443,578 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPDL heterogeneous nuclear ribonucleoprotein D like enables ISO (PMID:9538234) UniProt PMID:9538234 NCBI chr 7:30,804,807...30,810,539
Ensembl chr 7:30,805,749...30,810,720 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl GO_REF:0000107 NCBI chr25:81,879,532...81,890,684
Ensembl chr25:81,878,111...81,890,701 		JBrowse link
G HROB homologous recombination factor with OB-fold enables IEA Ensembl GO_REF:0000107 NCBI chr16:62,230,588...62,251,090
Ensembl chr16:62,230,261...62,250,734 		JBrowse link
G IGHM immunoglobulin heavy constant mu enables IEA Ensembl GO_REF:0000107 Ensembl chr24:83,654,355...83,660,530 JBrowse link
G IGHMBP2 immunoglobulin mu DNA binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:5,619,138...5,655,033
Ensembl chr 1:5,619,425...5,655,737 		JBrowse link
G JCHAIN joining chain of multimeric IgA and IgM contributes_to
enables		 ISO
IEA		 (PMID:21786026) UniProtKB
Ensembl		 PMID:21786026 GO_REF:0000107 NCBI chr 7:19,164,341...19,213,973
Ensembl chr 7:19,163,765...19,175,389 		JBrowse link
G LOC103242912 nucleoside diphosphate kinase A ISO RGD PMID:12010125 RGD:633207 NCBI chr16:42,186,039...42,195,608
Ensembl chr16:42,185,260...42,195,616 		JBrowse link
G LOC103245886 heterogeneous nuclear ribonucleoprotein A1-like enables IEA Ensembl GO_REF:0000107 NCBI chr26:47,513,308...47,515,651 JBrowse link
G LOC103246803 mismatch repair endonuclease PMS2 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr28:15,174,359...15,209,962
Ensembl chr28:15,172,100...15,209,852 		JBrowse link
G LOC119622192 heterogeneous nuclear ribonucleoprotein A1-like enables IEA Ensembl GO_REF:0000107
G LONP1 lon peptidase 1, mitochondrial enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:5,348,968...5,371,521
Ensembl chr 6:5,346,426...5,371,507 		JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing enables ISO (PMID:12071956) MGI PMID:12071956 NCBI chr14:63,263,101...63,380,607 JBrowse link
G MCM10 minichromosome maintenance 10 replication initiation factor enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 9:13,200,018...13,252,830
Ensembl chr 9:13,204,246...13,253,367 		JBrowse link
G MCM2 minichromosome maintenance complex component 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:53,419,958...53,452,720
Ensembl chr22:53,420,417...53,444,095 		JBrowse link
G MCM3 minichromosome maintenance complex component 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:20,222,440...20,243,807
Ensembl chr17:20,222,590...20,243,809 		JBrowse link
G MCM4 minichromosome maintenance complex component 4 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:10567526), (PMID:12207017)		 UniProt
TreeGrafter
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:44,120,291...44,136,625
Ensembl chr 8:44,120,301...44,138,193 		JBrowse link
G MCM5 minichromosome maintenance complex component 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:18,164,743...18,189,223
Ensembl chr19:18,164,879...18,189,284 		JBrowse link
G MCM6 minichromosome maintenance complex component 6 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:12207017)
(PMID:10567526)		 UniProt
TreeGrafter
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chr10:20,053,726...20,089,571
Ensembl chr10:20,051,138...20,089,545 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:12207017)		 UniProt
Ensembl
TreeGrafter		 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chr28:12,976,487...12,985,354
Ensembl chr28:12,977,013...12,985,898 		JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:32,137,983...32,181,187
Ensembl chr 2:32,138,173...32,181,179 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr13:54,945,668...55,069,869
Ensembl chr13:54,945,786...55,070,328 		JBrowse link
G MEIOB meiosis specific with OB-fold enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:1,738,250...1,779,412
Ensembl chr 5:1,738,275...1,773,727 		JBrowse link
G MLH1 mutL homolog 1 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MMS22L MMS22 like, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chr13:76,611,574...76,750,893
Ensembl chr13:76,611,517...76,750,616 		JBrowse link
G MSH2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr14:59,730,101...59,802,857
Ensembl chr14:59,729,789...59,802,819 		JBrowse link
G MSH3 mutS homolog 3 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 4:74,811,181...75,032,067
Ensembl chr 4:74,811,198...75,032,005 		JBrowse link
G NABP1 nucleic acid binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:77,210,624...77,222,340
Ensembl chr10:77,210,702...77,218,289 		JBrowse link
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr11:52,176,021...52,183,204
Ensembl chr11:52,177,987...52,182,572 		JBrowse link
G NCL nucleolin ISO RGD PMID:6311246 RGD:9693696 NCBI chr10:117,478,279...117,487,810 JBrowse link
G NEIL3 nei like DNA glycosylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:123,408,582...123,462,475
Ensembl chr 7:123,409,363...123,462,411 		JBrowse link
G NOL12 nucleolar protein 12 ISO RGD PMID:16430885 RGD:8553573 NCBI chr19:20,386,709...20,395,325
Ensembl chr19:20,386,723...20,394,897 		JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr25:23,597,210...23,634,262
Ensembl chr25:23,597,464...23,629,169 		JBrowse link
G PARK7 Parkinsonism associated deglycase NOT|enables ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chr20:123,776,084...123,808,031
Ensembl chr20:123,776,297...123,798,434 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:37,013,486...37,015,119
Ensembl chr14:37,013,880...37,014,947 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables ISO (PMID:24026233) MGI PMID:24026233 NCBI chr11:49,548,615...49,580,962 JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:23,184,921...23,492,836
Ensembl chr  X:23,185,046...23,492,992 		JBrowse link
G POLR2G RNA polymerase II subunit G enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:11,140,897...11,150,879
Ensembl chr 1:11,140,867...11,150,882 		JBrowse link
G POLR2H RNA polymerase II, I and III subunit H enables IEA Ensembl GO_REF:0000107 NCBI chr15:5,051,705...5,056,497
Ensembl chr15:5,051,712...5,056,413 		JBrowse link
G POLR3C RNA polymerase III subunit C enables IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr20:12,901,879...12,919,748
Ensembl chr20:12,901,898...12,919,783 		JBrowse link
G POU4F1 POU class 4 homeobox 1 enables ISO (PMID:8621561) UniProt PMID:8621561 NCBI chr 3:57,667,248...57,673,071 JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:1561080 RGD:10045981 NCBI chr 6:546,010...560,086
Ensembl chr 6:545,964...562,630 		JBrowse link
G PURA purine rich element binding protein A enables IEA Ensembl GO_REF:0000107 NCBI chr23:42,757,963...42,767,393
Ensembl chr23:42,764,263...42,765,231 		JBrowse link
G PURB purine rich element binding protein B enables IEA Ensembl GO_REF:0000107 NCBI chr21:13,796,087...13,805,162
Ensembl chr21:13,796,118...13,797,056 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase enables IEA InterPro GO_REF:0000002 NCBI chr22:44,878,015...44,960,610
Ensembl chr22:44,875,292...44,960,089 		JBrowse link
G RAD51 RAD51 recombinase enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:4,560,107...4,582,357
Ensembl chr11:4,560,175...4,581,142 		JBrowse link
G RAD51B RAD51 paralog B enables ISO (PMID:12441335) UniProt PMID:12441335 NCBI chr24:45,056,485...45,704,394 JBrowse link
G RAD51B RAD51 paralog B enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr24:45,056,787...45,117,699 JBrowse link
G RAD51D RAD51 paralog D enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,603,326...28,623,120
Ensembl chr16:28,604,500...28,622,845 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chr11:893,984...989,119
Ensembl chr11:895,292...927,430 		JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr  X:94,454,011...94,523,015
Ensembl chr  X:94,453,938...94,523,012 		JBrowse link
G REXO4 REX4 homolog, 3'-5' exonuclease enables IEA Ensembl GO_REF:0000107 NCBI chr12:4,718,728...4,732,138
Ensembl chr12:4,718,799...4,731,241 		JBrowse link
G RNF138 ring finger protein 138 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr18:48,604,241...48,643,834
Ensembl chr18:48,603,965...48,642,720 		JBrowse link
G RPA1 replication protein A1 enables ISO
IEA		 RGD
Ensembl		 PMID:8463251 GO_REF:0000107 RGD:2307012 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 enables ISO (PMID:19010961) RGD
UniProt		 PMID:8463251 PMID:19010961 RGD:2307012 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPA3 replication protein A3 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:50,570,027...50,574,270
Ensembl chr21:50,570,751...50,574,216 		JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component enables IEA Ensembl GO_REF:0000107 NCBI chr26:41,523,610...41,589,014
Ensembl chr26:41,522,542...41,588,948 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:57,641,634...57,699,685
Ensembl chr 2:57,639,046...57,699,525 		JBrowse link
G SETMAR SET domain and mariner transposase fusion gene enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:40,389,390...40,403,917
Ensembl chr22:40,389,485...40,403,898 		JBrowse link
G SHOC1 shortage in chiasmata 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:27,716,014...27,820,858
Ensembl chr12:27,720,405...27,821,674 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:35,377,381...35,423,218
Ensembl chr12:35,374,947...35,423,364 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 enables IEA Ensembl GO_REF:0000107 NCBI chr15:30,405,713...30,441,943
Ensembl chr15:30,403,826...30,441,935 		JBrowse link
G SMC5 structural maintenance of chromosomes 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:81,317,689...81,426,196 JBrowse link
G SMC6 structural maintenance of chromosomes 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:89,917,621...90,005,604
Ensembl chr14:89,917,518...90,000,088 		JBrowse link
G SPEN spen family transcriptional repressor enables ISO (PMID:10451362) MGI PMID:10451362 NCBI chr20:116,359,981...116,458,156
Ensembl chr20:116,361,008...116,458,064 		JBrowse link
G SPRTN SprT-like N-terminal domain enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr25:68,599,377...68,620,568
Ensembl chr25:68,599,780...68,620,621 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr21:110,492,340...110,504,176
Ensembl chr21:110,492,377...110,504,177 		JBrowse link
G SSBP2 single stranded DNA binding protein 2 enables IEA InterPro GO_REF:0000002 NCBI chr 4:75,561,872...75,882,924
Ensembl chr 4:75,562,625...75,882,845 		JBrowse link
G SSBP4 single stranded DNA binding protein 4 enables IEA InterPro GO_REF:0000002 NCBI chr 6:16,891,140...16,906,505
Ensembl chr 6:16,891,430...16,910,030 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA Ensembl GO_REF:0000107 NCBI chr 9:96,919,584...96,967,941
Ensembl chr 9:96,915,951...96,967,394 		JBrowse link
G SUB1 SUB1 regulator of transcription enables ISO (PMID:8062391)
(PMID:16605275)		 UniProt
CAFA		 PMID:8062391 PMID:16605275 NCBI chr 4:31,860,744...31,879,851
Ensembl chr 4:31,860,830...31,877,070 		JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:10,308,727...10,311,657
Ensembl chr 6:10,310,178...10,311,509 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 enables ISO (PMID:15811850) UniProt PMID:15811850 NCBI chr24:67,672,178...67,762,340 JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 Ensembl chr24:67,679,206...67,762,941 JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:47,582,857...47,599,871
Ensembl chr17:47,583,014...47,600,628 		JBrowse link
G TEN1 TEN1 subunit of CST complex enables IEA InterPro GO_REF:0000002 Ensembl chr16:45,687,111...45,701,366 JBrowse link
G TOP1 DNA topoisomerase I enables IEA Ensembl GO_REF:0000107 NCBI chr 2:22,655,085...22,751,082
Ensembl chr 2:22,651,995...22,751,102 		JBrowse link
G TOP3A DNA topoisomerase III alpha enables IEA Ensembl GO_REF:0000107 NCBI chr16:17,315,466...17,358,863
Ensembl chr16:17,316,048...17,358,580 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables ISO (PMID:17293595), (PMID:17355961) MGI PMID:17293595 PMID:17355961 NCBI chr22:9,869,502...9,871,659 JBrowse link
G TSN translin contributes_to
enables		 ISO
IEA		 RGD
InterPro		 PMID:9681436 GO_REF:0000002 RGD:634412 NCBI chr10:8,532,033...8,541,768
Ensembl chr10:8,528,750...8,541,744 		JBrowse link
G TSNAX translin associated factor X contributes_to ISO RGD PMID:9681436 RGD:634412 NCBI chr25:68,787,717...68,826,751
Ensembl chr25:68,787,705...68,827,464 		JBrowse link
G TWNK twinkle mtDNA helicase enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:94,006,183...94,012,783
Ensembl chr 9:94,006,188...94,013,164 		JBrowse link
G WDR48 WD repeat domain 48 enables IEA Ensembl GO_REF:0000107 NCBI chr15:319,589...366,265
Ensembl chr15:319,810...366,246 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
G YBX1 Y-box binding protein 1 enables ISO (PMID:15282343) RGD
MGI		 PMID:15282343 PMID:17893273 RGD:2311253 NCBI chr20:90,229,927...90,250,213 JBrowse link
G YBX1 Y-box binding protein 1 enables IEA Ensembl GO_REF:0000107 Ensembl chr20:90,226,001...90,249,413 JBrowse link
G YBX3 Y-box binding protein 3 ISO RGD PMID:8029009 RGD:632638 NCBI chr11:10,498,162...10,522,432
Ensembl chr11:10,500,361...10,522,226 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD54L RAD54 like enables IEA Ensembl GO_REF:0000107 NCBI chr20:86,510,616...86,542,426
Ensembl chr20:86,507,248...86,542,663 		JBrowse link
G SMARCA1 SNF2 related chromatin remodeling ATPase 1 enables ISO (PMID:22705370) UniProt PMID:22705370 NCBI chr  X:104,690,937...104,768,326
Ensembl chr  X:104,690,689...104,768,298 		JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:102,253,187...102,319,356
Ensembl chr10:102,255,453...102,319,330 		JBrowse link
G TP53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 enables IEA Ensembl GO_REF:0000107 NCBI chr10:19,428,139...19,739,886
Ensembl chr10:19,427,652...19,572,384 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:8127654 RGD:728600 NCBI chr12:94,768,403...94,789,957
Ensembl chr12:94,768,480...94,789,743 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables ISO (PMID:8208614) MGI PMID:8208614 NCBI chr11:49,548,615...49,580,962 JBrowse link
G PCBP3 poly(rC) binding protein 3 enables ISO (PMID:22521865) MGI PMID:22521865 NCBI chr 2:89,304,497...89,585,037 JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NABP2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr11:52,176,021...52,183,204
Ensembl chr11:52,177,987...52,182,572 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chr12:84,207,818...84,226,438
Ensembl chr12:84,207,820...84,226,562 		JBrowse link
G BLM BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:1703006 RGD:10045979 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G RECQL RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr11:21,334,601...21,366,943
Ensembl chr11:21,331,584...21,366,979 		JBrowse link
G RECQL4 RecQ like helicase 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:138,725,494...138,732,286
Ensembl chr 8:138,725,633...138,732,096 		JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGHMBP2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:8493094) MGI PMID:8493094 NCBI chr 1:5,619,138...5,655,033
Ensembl chr 1:5,619,425...5,655,737 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl GO_REF:0000107 NCBI chr21:93,572,139...93,688,374
Ensembl chr21:93,571,272...93,655,869 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTC1 CST telomere replication complex component 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:7,594,493...7,618,202
Ensembl chr16:7,594,219...7,615,754 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr21:32,167,126...32,178,031
Ensembl chr21:32,167,337...32,176,980 		JBrowse link
G LOC103245886 heterogeneous nuclear ribonucleoprotein A1-like enables IEA Ensembl GO_REF:0000107 NCBI chr26:47,513,308...47,515,651 JBrowse link
G LOC119622192 heterogeneous nuclear ribonucleoprotein A1-like enables IEA Ensembl GO_REF:0000107
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr11:52,176,021...52,183,204
Ensembl chr11:52,177,987...52,182,572 		JBrowse link
G POT1 protection of telomeres 1 enables IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:93,572,139...93,688,374
Ensembl chr21:93,571,272...93,655,869 		JBrowse link
G RPA1 replication protein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RPA2 replication protein A2 enables ISO (PMID:24747047) BHF-UCL PMID:24747047 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 enables IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:68,608,830...68,647,220
Ensembl chr 8:68,608,844...68,648,171 		JBrowse link
G TERF2 telomeric repeat binding factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:58,019,422...58,051,819
Ensembl chr 5:58,019,468...58,050,802 		JBrowse link
G TERF2IP TERF2 interacting protein enables IEA Ensembl GO_REF:0000107 NCBI chr 5:61,133,028...61,142,713
Ensembl chr 5:61,133,173...61,141,896 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chr 8:138,503,836...138,529,562
Ensembl chr 8:138,503,831...138,529,165 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:37,013,486...37,015,119
Ensembl chr14:37,013,880...37,014,947 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:32,167,126...32,178,031
Ensembl chr21:32,167,337...32,176,980 		JBrowse link
G LOC103235629 heterogeneous nuclear ribonucleoproteins A2/B1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr 7:9,610,008...9,611,665 JBrowse link
G LOC119625213 heterogeneous nuclear ribonucleoproteins A2/B1 enables IEA TreeGrafter GO_REF:0000118
G POT1 protection of telomeres 1 enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:93,572,139...93,688,374
Ensembl chr21:93,571,272...93,655,869 		JBrowse link
G RAD50 RAD50 double strand break repair protein enables IEA TreeGrafter GO_REF:0000118 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G RPA1 replication protein A1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 9:96,919,584...96,967,941
Ensembl chr 9:96,915,951...96,967,394 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18124
    binding 16620
      organic cyclic compound binding 5409
        nucleic acid binding 3439
          DNA binding 2234
            single-stranded DNA binding 131
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 19
paths to the root