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ONTOLOGY REPORT - ANNOTATIONS

Term:single-stranded DNA binding
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Accession:GO:0003697 term browser browse the term
Definition:Binding to single-stranded DNA.
Comment:Note that this term is restricted to those cases where the binding is to a single-stranded DNA molecule, not to one of the stands of double-stranded DNA.
Synonyms:exact_synonym: ssDNA binding
 alt_id: GO:0003698;   GO:0003699


show annotations for term's descendants           Sort by:
single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALYREF Aly/REF export factor enables ISO (PMID:10786854) MGI PMID:10786854 NCBI chr17:76,293,410...76,297,171 JBrowse link
G ANXA1 annexin A1 contributes_to ISO RGD PMID:10548514 PMID:20655937 RGD:2306916 RGD:7421590 NCBI chr 9:51,647,404...51,665,990
Ensembl chr 9:71,929,728...71,948,779 		JBrowse link
G APTX aprataxin enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:32,747,409...32,819,270
Ensembl chr 9:33,556,419...33,585,060 		JBrowse link
G BARD1 BRCA1 associated RING domain 1 enables IEA InterPro GO_REF:0000002 NCBI chr2B:101,984,287...102,068,523
Ensembl chr2B:220,456,972...220,541,145 		JBrowse link
G BIVM basic, immunoglobulin-like variable motif containing enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:83,959,365...84,002,223
Ensembl chr13:103,096,344...103,174,182 		JBrowse link
G BLM BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864 		JBrowse link
G BRCA2 BRCA2 DNA repair associated enables ISO
IEA		 RGD
Ensembl		 PMID:12228710 GO_REF:0000107 RGD:632363 NCBI chr13:13,574,422...13,658,967
Ensembl chr13:32,010,066...32,091,332 		JBrowse link
G C20H19orf33 chromosome 20 C19orf33 homolog NOT|enables ISO (PMID:11080599) HGNC-UCL PMID:11080599 NCBI chr19:35,395,222...35,396,580
Ensembl chr19:43,969,247...43,970,601 		JBrowse link
G CDC45 cell division cycle 45 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:2,239,040...2,279,807
Ensembl chr22:17,913,729...17,955,195 		JBrowse link
G CNBP CCHC-type zinc finger nucleic acid binding protein ISO RGD PMID:7788528 RGD:632384 NCBI chr 3:126,227,605...126,242,609
Ensembl chr 3:133,584,384...133,598,887 		JBrowse link
G CRY2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr11:45,801,504...45,837,357
Ensembl chr11:46,293,717...46,329,759 		JBrowse link
G CTC1 CST telomere replication complex component 1 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr17:43,410,385...43,433,784
Ensembl chr17:48,142,864...48,165,537 		JBrowse link
G DDX11 DEAD/H-box helicase 11 enables ISO (PMID:9013641) UniProt PMID:9013641 NCBI chr12:55,176,165...55,207,123 JBrowse link
G DHX36 DEAH-box helicase 36 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:151,331,468...151,382,406
Ensembl chr 3:158,885,541...158,935,871 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833 		JBrowse link
G DMC1 DNA meiotic recombinase 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:19,433,989...19,485,804
Ensembl chr22:37,253,609...37,305,769 		JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:42,356,039...42,427,754
Ensembl chr19:50,951,674...50,968,430 		JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:12,848,334...12,880,480
Ensembl chr16:14,272,417...14,304,496 		JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182 		JBrowse link
G FAM111A FAM111 trypsin like peptidase A enables IEA Ensembl GO_REF:0000107 NCBI chr11:54,359,711...54,372,132
Ensembl chr11:57,818,413...57,823,046 		JBrowse link
G FBH1 F-box DNA helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:5,931,389...5,978,844
Ensembl chr10:5,915,713...5,962,778 		JBrowse link
G FUBP3 far upstream element binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:101,703,130...101,762,607
Ensembl chr 9:130,353,079...130,411,601 		JBrowse link
G HMCES 5-hydroxymethylcytosine binding, ES cell specific enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:126,339,758...126,367,166
Ensembl chr 3:133,694,676...133,721,519 		JBrowse link
G HMGB1 high mobility group box 1 ISO RGD PMID:11024186 RGD:2316830 NCBI chr13:11,737,942...11,894,923
Ensembl chr13:30,174,899...30,179,527 		JBrowse link
G HMGB2 high mobility group box 2 enables ISO (PMID:11754747) AgBase PMID:11754747 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:8521471) HGNC-UCL PMID:8521471 NCBI chr12:34,456,900...34,463,317
Ensembl chr12:35,184,943...35,188,443 		JBrowse link
G HNRNPDL heterogeneous nuclear ribonucleoprotein D like enables ISO (PMID:9538234) UniProt PMID:9538234 NCBI chr 4:41,771,512...41,777,135
Ensembl chr 4:47,621,973...47,628,885 		JBrowse link
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:15361071 RGD:10002777 NCBI chr 9:40,898,593...40,911,159
Ensembl chr 9:83,324,238...83,336,756 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U enables IEA Ensembl GO_REF:0000107 NCBI chr 1:220,450,218...220,461,412
Ensembl chr 1:225,817,899...225,842,031 		JBrowse link
G HROB homologous recombination factor with OB-fold enables IEA Ensembl GO_REF:0000107 NCBI chr17:13,233,464...13,254,726
Ensembl chr17:13,395,473...13,409,505 		JBrowse link
G IGHMBP2 immunoglobulin mu DNA binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr11:63,991,285...64,028,430
Ensembl chr11:67,294,195...67,331,659 		JBrowse link
G JCHAIN joining chain of multimeric IgA and IgM contributes_to
enables		 ISO
IEA		 (PMID:21786026) UniProtKB
Ensembl		 PMID:21786026 GO_REF:0000107 NCBI chr 4:53,554,643...53,565,693
Ensembl chr 4:59,901,109...59,914,576 		JBrowse link
G LOC100972985 meiosis specific with OB-fold enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:835,420...874,178 JBrowse link
G LOC100977980 single-stranded DNA-binding protein 4-like enables IEA InterPro GO_REF:0000002 NCBI chr18:2,256,126...2,257,959 JBrowse link
G LOC100986203 histone-lysine N-methyltransferase SETMAR enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:4,256,539...4,271,593
Ensembl chr 3:4,357,890...4,371,791 		JBrowse link
G LONP1 lon peptidase 1, mitochondrial enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:4,709,062...4,735,653
Ensembl chr19:5,644,525...5,670,956 		JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing enables IEA Ensembl GO_REF:0000107 NCBI chr2A:43,975,949...44,083,846
Ensembl chr2A:44,914,578...45,021,434 		JBrowse link
G MCM10 minichromosome maintenance 10 replication initiation factor enables IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr10:13,165,811...13,215,024
Ensembl chr10:13,138,824...13,187,991 		JBrowse link
G MCM2 minichromosome maintenance complex component 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641 		JBrowse link
G MCM3 minichromosome maintenance complex component 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:51,816,615...51,837,404
Ensembl chr 6:53,085,231...53,105,344 		JBrowse link
G MCM4 minichromosome maintenance complex component 4 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:10567526), (PMID:12207017)		 UniProt
TreeGrafter
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:44,387,529...44,404,773
Ensembl chr 8:41,778,247...41,794,783 		JBrowse link
G MCM5 minichromosome maintenance complex component 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:16,407,145...16,431,822
Ensembl chr22:34,249,831...34,274,423 		JBrowse link
G MCM6 minichromosome maintenance complex component 6 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:12207017)
(PMID:10567526)		 UniProt
TreeGrafter
Ensembl		 PMID:10567526 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:23,986,278...24,023,045
Ensembl chr2B:139,911,909...139,947,687 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 contributes_to
enables		 ISO
IEA		 (PMID:25661590)
(PMID:12207017)		 UniProt
TreeGrafter
Ensembl		 PMID:12207017 PMID:25661590 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:92,128,037...92,136,976
Ensembl chr 7:105,561,591...105,570,720 		JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr20:5,945,034...5,993,725
Ensembl chr20:5,729,174...5,775,133 		JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor enables IEA TreeGrafter GO_REF:0000118 NCBI chr 6:116,620,188...116,743,435
Ensembl chr 6:120,763,329...120,881,865 		JBrowse link
G MLH1 mutL homolog 1 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MMS22L MMS22 like, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chr 6:94,989,906...95,127,260
Ensembl chr 6:98,861,299...99,011,773 		JBrowse link
G MSH2 mutS homolog 2 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr2A:47,524,468...47,602,376
Ensembl chr2A:48,447,207...48,554,461 		JBrowse link
G MSH3 mutS homolog 3 contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 5:34,408,469...34,663,483
Ensembl chr 5:34,719,322...34,938,469 		JBrowse link
G NABP1 nucleic acid binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2B:78,980,156...78,989,309
Ensembl chr2B:196,895,166...196,903,977 		JBrowse link
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:32,685,521...32,693,318
Ensembl chr12:32,937,017...32,944,754 		JBrowse link
G NCL nucleolin ISO RGD PMID:6311246 RGD:9693696 NCBI chr2B:118,703,148...118,712,893
Ensembl chr2B:237,490,378...237,500,193 		JBrowse link
G NEIL3 nei like DNA glycosylase 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:169,503,942...169,556,654
Ensembl chr 4:181,738,803...181,795,082 		JBrowse link
G NME1 NME/NM23 nucleoside diphosphate kinase 1 ISO RGD PMID:12010125 RGD:633207 NCBI chr17:45,243,588...45,252,135
Ensembl chr17:50,113,622...50,131,636 		JBrowse link
G NOL12 nucleolar protein 12 ISO RGD PMID:16430885 RGD:8553573 NCBI chr22:18,603,990...18,611,060
Ensembl chr22:36,436,402...36,443,662 		JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 1:181,322,760...181,359,321
Ensembl chr 1:185,606,796...185,642,984 		JBrowse link
G PARK7 Parkinsonism associated deglycase NOT|enables ISO (PMID:22683601) ParkinsonsUK-UCL PMID:22683601 NCBI chr 1:6,722,260...6,745,915
Ensembl chr 1:7,969,280...7,993,271 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2A:70,144,217...70,145,938
Ensembl chr2A:71,258,331...71,261,658 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables ISO (PMID:24026233) MGI PMID:24026233 NCBI chr12:35,273,540...35,301,292
Ensembl chr12:36,058,463...36,082,672 		JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component contributes_to
enables		 ISO
IEA		 (PMID:11809883) HGNC
Ensembl		 PMID:11809883 GO_REF:0000107 NCBI chr 7:7,433,031...7,459,560
Ensembl chr 7:6,167,403...6,202,984 		JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:17,290,805...17,592,163
Ensembl chr  X:24,657,878...24,960,231 		JBrowse link
G POLR2G RNA polymerase II subunit G enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:58,116,833...58,122,031
Ensembl chr11:61,470,866...61,476,073 		JBrowse link
G POLR2H RNA polymerase II, I and III subunit H enables IEA Ensembl GO_REF:0000107 NCBI chr 3:181,399,136...181,405,680
Ensembl chr 3:189,881,594...189,887,608 		JBrowse link
G POLR3C RNA polymerase III subunit C enables IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:121,917,371...121,935,976
Ensembl chr 1:113,733,846...113,752,486 		JBrowse link
G POU4F1 POU class 4 homeobox 1 enables ISO (PMID:8621561) UniProt PMID:8621561 NCBI chr13:59,821,614...59,829,671 JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:1561080 RGD:10045981 NCBI chr19:319,953...334,945 JBrowse link
G PURA purine rich element binding protein A enables IEA Ensembl GO_REF:0000107 NCBI chr 5:135,541,865...135,610,526
Ensembl chr 5:141,659,224...141,727,870
Ensembl chr 5:141,659,224...141,727,870 		JBrowse link
G PURB purine rich element binding protein B enables IEA Ensembl GO_REF:0000107 NCBI chr 7:45,590,183...45,600,089
Ensembl chr 7:45,667,233...45,668,159 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase enables IEA InterPro GO_REF:0000002 NCBI chr 3:8,832,910...8,918,067
Ensembl chr 3:9,076,500...9,161,585 		JBrowse link
G RAD51 RAD51 recombinase enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207 		JBrowse link
G RAD51AP1 RAD51 associated protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:4,657,972...4,679,232
Ensembl chr12:4,578,621...4,599,879 		JBrowse link
G RAD51B RAD51 paralog B enables IEA TreeGrafter GO_REF:0000118 NCBI chr14:48,399,345...49,314,577
Ensembl chr14:67,281,148...68,110,693 		JBrowse link
G RAD51D RAD51 paralog D enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:21,666,236...21,693,886
Ensembl chr17:21,958,212...21,978,406 		JBrowse link
G RAD52 RAD52 homolog, DNA repair protein enables IEA Ensembl GO_REF:0000107 NCBI chr12:986,372...1,066,708
Ensembl chr12:946,825...985,668 		JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked enables IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr  X:95,714,600...95,781,853
Ensembl chr  X:106,092,340...106,159,772 		JBrowse link
G REXO4 REX4 homolog, 3'-5' exonuclease enables IEA Ensembl GO_REF:0000107 NCBI chr 9:104,528,838...104,540,813
Ensembl chr 9:133,140,392...133,152,413 		JBrowse link
G RNF138 ring finger protein 138 enables IEA TreeGrafter GO_REF:0000118 NCBI chr18:25,300,480...25,340,010 JBrowse link
G RNF138 ring finger protein 138 enables IEA TreeGrafter GO_REF:0000118 Ensembl chr18:28,897,138...28,932,652 JBrowse link
G RPA1 replication protein A1 enables ISO
IEA		 RGD
Ensembl		 PMID:8463251 GO_REF:0000107 RGD:2307012 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G RPA2 replication protein A2 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:8463251 GO_REF:0000107 GO_REF:0000118 RGD:2307012 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666 		JBrowse link
G RPA3 replication protein A3 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:8,361,623...8,365,098
Ensembl chr 7:7,713,629...7,717,169 		JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component enables IEA Ensembl GO_REF:0000107 NCBI chr15:20,355,927...20,424,153
Ensembl chr15:38,599,163...38,662,100 		JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:33,224,200...33,282,018
Ensembl chr20:34,341,367...34,398,314 		JBrowse link
G SHOC1 shortage in chiasmata 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:82,816,269...82,916,515
Ensembl chr 9:110,978,485...111,085,856 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967 		JBrowse link
G SMC5 structural maintenance of chromosomes 5 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 9:54,446,863...54,543,249 JBrowse link
G SMC6 structural maintenance of chromosomes 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr2A:17,648,371...17,735,910
Ensembl chr2A:17,776,276...17,854,052 		JBrowse link
G SPEN spen family transcriptional repressor enables ISO (PMID:10451362) MGI PMID:10451362 NCBI chr 1:14,987,415...15,079,477
Ensembl chr 1:16,004,473...16,072,585 		JBrowse link
G SPRTN SprT-like N-terminal domain enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:206,889,897...206,906,047
Ensembl chr 1:211,914,082...211,931,093 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 enables IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:133,670,085...133,682,228
Ensembl chr 7:146,139,837...146,151,495 		JBrowse link
G SSBP2 single stranded DNA binding protein 2 enables IEA InterPro GO_REF:0000002 NCBI chr 5:33,535,213...33,859,595
Ensembl chr 5:33,852,266...34,170,615 		JBrowse link
G SSBP3 single stranded DNA binding protein 3 enables IEA InterPro GO_REF:0000002 NCBI chr 1:53,501,656...53,680,682
Ensembl chr 1:55,094,820...55,272,207 		JBrowse link
G SSBP4 single stranded DNA binding protein 4 enables IEA InterPro GO_REF:0000002 NCBI chr19:17,897,548...17,913,159
Ensembl chr19:18,877,213...18,883,849 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA Ensembl GO_REF:0000107 NCBI chr10:100,456,589...100,518,010
Ensembl chr10:103,942,422...103,977,847 		JBrowse link
G SUB1 SUB1 regulator of transcription enables IEA Ensembl GO_REF:0000107 NCBI chr 5:77,728,309...77,800,534
Ensembl chr 5:83,112,131...83,130,755 		JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr19:10,920,774...10,923,769
Ensembl chr19:11,632,682...11,634,202 		JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:70,574,066...70,662,562
Ensembl chr14:89,926,462...90,014,802 		JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:24,487,551...24,505,268
Ensembl chr 6:24,819,494...24,837,189 		JBrowse link
G TEN1 TEN1 subunit of CST complex enables IEA InterPro GO_REF:0000002 NCBI chr17:69,928,204...69,947,138
Ensembl chr17:75,479,181...75,498,018 		JBrowse link
G TOP1 DNA topoisomerase I enables IEA Ensembl GO_REF:0000107 NCBI chr20:37,368,606...37,464,649
Ensembl chr20:38,468,452...38,562,652 		JBrowse link
G TOP3A DNA topoisomerase III alpha enables IEA Ensembl GO_REF:0000107 NCBI chr17:32,814,448...32,858,076
Ensembl chr17:37,897,037...37,936,135 		JBrowse link
G TREX1 three prime repair exonuclease 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:48,387,762...48,389,693
Ensembl chr 3:49,470,222...49,471,331 		JBrowse link
G TSN translin contributes_to
enables		 ISO
IEA		 RGD
InterPro		 PMID:9681436 GO_REF:0000002 RGD:634412 NCBI chr2B:38,493,248...38,524,502
Ensembl chr2B:122,440,668...122,453,519 		JBrowse link
G TSNAX translin associated factor X contributes_to ISO RGD PMID:9681436 RGD:634412 NCBI chr 1:207,082,890...207,120,706
Ensembl chr 1:212,104,927...212,142,691 		JBrowse link
G TWNK twinkle mtDNA helicase enables IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:97,588,811...97,595,663
Ensembl chr10:101,065,096...101,071,407 		JBrowse link
G WDR48 WD repeat domain 48 enables IEA Ensembl GO_REF:0000107 NCBI chr 3:38,948,440...38,992,872
Ensembl chr 3:39,228,920...39,273,300 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:14,063,499...14,097,023
Ensembl chr 3:14,403,958...14,437,377 		JBrowse link
G YBX1 Y-box binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:41,982,365...42,002,430
Ensembl chr 1:43,360,052...43,380,313 		JBrowse link
G YBX3 Y-box binding protein 3 ISO RGD PMID:8029009 RGD:632638 NCBI chr12:10,728,049...10,752,267
Ensembl chr12:10,996,380...11,018,172 		JBrowse link
ATP-dependent DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD54L RAD54 like enables IEA Ensembl GO_REF:0000107 NCBI chr 1:45,549,586...45,581,711
Ensembl chr 1:46,905,598...46,936,259 		JBrowse link
G SMARCA1 SNF2 related chromatin remodeling ATPase 1 enables ISO (PMID:22705370) UniProt PMID:22705370 NCBI chr  X:118,577,295...118,654,326
Ensembl chr  X:128,875,334...128,952,900 		JBrowse link
G SMARCAL1 SNF2 related chromatin remodeling annealing helicase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2B:103,672,934...103,743,802
Ensembl chr2B:222,276,353...222,347,258 		JBrowse link
G TP53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120 		JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 enables IEA Ensembl GO_REF:0000107 NCBI chr2B:24,331,731...24,665,652
Ensembl chr2B:139,234,909...139,577,193 		JBrowse link
C-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:8127654 RGD:728600 NCBI chr 9:40,898,593...40,911,159
Ensembl chr 9:83,324,238...83,336,756 		JBrowse link
G PCBP2 poly(rC) binding protein 2 enables ISO (PMID:8208614) MGI PMID:8208614 NCBI chr12:35,273,540...35,301,292
Ensembl chr12:36,058,463...36,082,672 		JBrowse link
G PCBP3 poly(rC) binding protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chr21:31,972,644...32,282,794
Ensembl chr21:45,450,722...45,545,909 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NABP2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr12:32,685,521...32,693,318
Ensembl chr12:32,937,017...32,944,754 		JBrowse link
DNA/DNA annealing activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 ISO RGD PMID:20655937 RGD:7421590 NCBI chr 9:51,647,404...51,665,990
Ensembl chr 9:71,929,728...71,948,779 		JBrowse link
G BLM BLM RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 ISO RGD PMID:1703006 RGD:10045979 NCBI chr12:34,456,900...34,463,317
Ensembl chr12:35,184,943...35,188,443 		JBrowse link
G RECQL RecQ like helicase enables IEA Ensembl GO_REF:0000107 NCBI chr12:64,796,383...64,829,165
Ensembl chr12:67,400,315...67,432,724 		JBrowse link
G RECQL4 RecQ like helicase 4 enables IEA Ensembl GO_REF:0000107 Ensembl chr 8:144,267,101...144,276,985 JBrowse link
G-rich single-stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IGHMBP2 immunoglobulin mu DNA binding protein 2 enables ISO (PMID:8493094) MGI PMID:8493094 NCBI chr11:63,991,285...64,028,430
Ensembl chr11:67,294,195...67,331,659 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTC1 CST telomere replication complex component 1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:43,410,385...43,433,784
Ensembl chr17:48,142,864...48,165,537 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:23935072) BHF-UCL PMID:23935072 NCBI chr12:34,456,900...34,463,317
Ensembl chr12:35,184,943...35,188,443 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985 		JBrowse link
G LOC100984603 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:72,829,188...72,893,727 JBrowse link
G LOC100986897 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:505,145...506,691 JBrowse link
G LOC103783346 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:58,446,938...58,448,548 JBrowse link
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:32,685,521...32,693,318
Ensembl chr12:32,937,017...32,944,754 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558 		JBrowse link
G RPA1 replication protein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G RPA2 replication protein A2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:69,545,115...69,583,997 JBrowse link
G TERF2 telomeric repeat binding factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:49,729,906...49,763,002
Ensembl chr16:69,116,539...69,148,423 		JBrowse link
G TERF2IP TERF2 interacting protein enables IEA Ensembl GO_REF:0000107 NCBI chr16:56,216,920...56,226,612
Ensembl chr16:75,565,184...75,573,882 		JBrowse link
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chr 8:141,055,310...141,078,360
Ensembl chr 8:144,062,137...144,067,866 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2A:70,144,217...70,145,938
Ensembl chr2A:71,258,331...71,261,658 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558 		JBrowse link
G RAD50 RAD50 double strand break repair protein enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:127,972,630...128,059,911
Ensembl chr 5:134,134,495...134,222,261 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr10:100,456,589...100,518,010
Ensembl chr10:103,942,422...103,977,847 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17686
    binding 16286
      organic cyclic compound binding 5337
        nucleic acid binding 3362
          DNA binding 2180
            single-stranded DNA binding 129
              C-rich single-stranded DNA binding 3
              DNA/DNA annealing activity + 10
              G-rich single-stranded DNA binding 2
              sequence-specific single stranded DNA binding + 17
paths to the root