ONTOLOGY REPORT - ANNOTATIONS |
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Term: | somatic diversification of immune receptors via germline recombination within a single locus |
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Accession: | GO:0002562
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browse the term
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Definition: | The process in which immune receptor genes are diversified through recombination of the germline genetic elements within a single genetic locus. |
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Polb |
DNA polymerase beta |
acts_upstream_of_or_within |
ISO |
MGI:5427084 (PMID:24388753) |
RGD |
PMID:24388753 |
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NCBI chr16:76,081,903...76,105,174
Ensembl chr16:69,379,400...69,404,812
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Yy1 |
YY1 transcription factor |
involved_in |
ISO |
MGI:3624790 (PMID:23531880) |
RGD |
PMID:23531880 |
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NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747
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Cyren |
cell cycle regulator of NHEJ |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:30017584), (PMID:31795137) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:30017584 PMID:31795137 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 4:63,547,311...63,553,394
Ensembl chr 4:63,547,335...63,551,602
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Foxp1 |
forkhead box P1 |
acts_upstream_of_or_within |
ISO |
MGI:3711150 (PMID:16819554) |
RGD |
PMID:16819554 |
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NCBI chr 4:133,117,346...133,808,647
Ensembl chr 4:131,564,756...132,112,258
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Lig4 |
DNA ligase 4 |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 MGI:1857732 (PMID:9823897) |
GO_Central RGD |
PMID:9823897 |
GO_REF:0000033 |
NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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Nhej1 |
nonhomologous end-joining factor 1 |
involved_in |
ISO IEA ISS |
(PMID:20558749) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:20558749 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 9:83,974,995...84,071,161
Ensembl chr 9:76,526,324...76,622,444
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Prkdc |
protein kinase, DNA-activated, catalytic subunit |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 MGI:2383951 (PMID:9768755) |
GO_Central RGD |
PMID:9768755 |
GO_REF:0000033 |
NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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Tcf3 |
transcription factor 3 |
acts_upstream_of_or_within involved_in |
ISO IBA IEA |
(PMID:16428437) MGI:2178112 (PMID:16428437) GO_REF:0000033 GO_REF:0000107 |
RGD GO_Central Ensembl |
PMID:16428437 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 7:9,931,251...9,952,994
Ensembl chr 7:9,280,571...9,302,314
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Xrcc4 |
X-ray repair cross complementing 4 |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 MGI:1926771 (PMID:9875844) |
GO_Central RGD |
PMID:9875844 |
GO_REF:0000033 |
NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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Aicda |
activation-induced cytidine deaminase |
acts_upstream_of_or_within involved_in |
ISO |
(PMID:17713479) (PMID:21518874) |
RGD |
PMID:17713479 PMID:21518874 |
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NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
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Atad5 |
ATPase family, AAA domain containing 5 |
acts_upstream_of |
ISO |
MGI:4127920 (PMID:25404367) |
RGD |
PMID:25404367 |
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NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
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Batf |
basic leucine zipper ATF-like transcription factor |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:20421391), (PMID:21572431) |
UniProt RGD |
PMID:20421391 PMID:21572431 |
GO_REF:0000024 |
NCBI chr 6:111,084,717...111,107,052
Ensembl chr 6:105,353,715...105,376,051
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Cd40lg |
CD40 ligand |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:7529792) |
Ensembl RGD |
PMID:7529792 |
GO_REF:0000107 |
NCBI chr X:140,164,341...140,176,057
Ensembl chr X:135,126,969...135,138,306
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Ercc1 |
ERCC excision repair 1, endonuclease non-catalytic subunit |
acts_upstream_of_or_within |
ISO |
MGI:2183944 (PMID:15280420) |
RGD |
PMID:15280420 |
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NCBI chr 1:88,099,308...88,135,966
Ensembl chr 1:78,996,390...79,007,963
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Exo1 |
exonuclease 1 |
acts_upstream_of_or_within |
ISO |
MGI:2653925 (PMID:14716311) |
RGD |
PMID:14716311 |
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NCBI chr13:90,341,947...90,366,861
Ensembl chr13:87,809,810...87,834,654
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Exosc3 |
exosome component 3 |
involved_in |
ISO |
(PMID:21255825) |
RGD |
PMID:21255825 |
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NCBI chr 5:64,369,495...64,374,711
Ensembl chr 5:59,573,886...59,579,060
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Exosc6 |
exosome component 6 |
involved_in |
ISO |
(PMID:21255825) |
RGD |
PMID:21255825 |
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NCBI chr19:55,931,523...55,932,937
Ensembl chr19:39,022,183...39,023,515
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Lig4 |
DNA ligase 4 |
acts_upstream_of_or_within |
ISO |
MGI:1857732 (PMID:17713479) |
RGD |
PMID:17713479 |
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NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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Mlh1 |
mutL homolog 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:1857946 (PMID:12743174) |
Ensembl RGD |
PMID:12743174 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
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Msh2 |
mutS homolog 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:1857940|MGI:2151801 (PMID:10430621), (PMID:12743174) |
Ensembl RGD |
PMID:10430621 PMID:12743174 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
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Msh6 |
mutS homolog 6 |
acts_upstream_of_or_within |
ISO |
MGI:109352|MGI:3653701 (PMID:16618598), (PMID:17015724) |
RGD |
PMID:16618598 PMID:17015724 |
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NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
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Nbn |
nibrin |
involved_in |
ISS ISO IEA |
GO_REF:0000024 (PMID:15668383) GO_REF:0000107 |
UniProt RGD Ensembl |
PMID:15668383 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 5:34,256,678...34,291,163
Ensembl chr 5:29,459,457...29,494,150
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Nfkbiz |
NFKB inhibitor zeta |
involved_in |
ISO |
MGI:3046930|MGI:5501251 (PMID:25124037), (PMID:31182790) |
RGD |
PMID:25124037 PMID:31182790 |
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NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723
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Pcyt1a |
phosphate cytidylyltransferase 1A, choline |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:19139091) |
UniProt RGD |
PMID:19139091 |
GO_REF:0000024 |
NCBI chr11:68,313,860...68,357,828
Ensembl chr11:68,313,882...68,357,357
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Rnf168 |
ring finger protein 168 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:20080757) |
UniProt RGD |
PMID:20080757 |
GO_REF:0000024 |
NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
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Rnf8 |
ring finger protein 8 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:20080757) |
UniProt RGD |
PMID:20080757 |
GO_REF:0000024 |
NCBI chr20:7,683,890...7,708,437
Ensembl chr20:7,682,322...7,708,491
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Sanbr |
SANT and BTB domain regulator of CSR |
involved_in |
ISS IBA ISO IEA |
GO_REF:0000024 GO_REF:0000033 (PMID:33831416) GO_REF:0000107 |
UniProt GO_Central RGD Ensembl |
PMID:33831416 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 |
NCBI chr14:97,516,652...97,585,955
Ensembl chr14:97,516,413...97,581,346
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Swap70 |
switching B-cell complex subunit SWAP70 |
acts_upstream_of_or_within |
ISO |
(PMID:9642267) |
RGD |
PMID:9642267 |
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NCBI chr 1:173,702,338...173,763,540
Ensembl chr 1:164,267,609...164,328,794
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Ung |
uracil-DNA glycosylase |
acts_upstream_of_or_within |
ISO |
MGI:1343961 (PMID:17015724) |
RGD |
PMID:17015724 |
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NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
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Xrcc4 |
X-ray repair cross complementing 4 |
acts_upstream_of_or_within |
ISO |
MGI:1926771|MGI:3047571|MGI:3641440 (PMID:17713479) |
RGD |
PMID:17713479 |
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NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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Ccr6 |
C-C motif chemokine receptor 6 |
involved_in |
ISO |
(PMID:27174992) |
RGD |
PMID:27174992 |
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NCBI chr 1:55,022,037...55,055,857
Ensembl chr 1:52,474,168...52,498,603
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Fdcsp |
follicular dendritic cell secreted protein |
acts_upstream_of_positive_effect |
ISO |
MGI:7719862 (PMID:17548624) |
RGD |
PMID:17548624 |
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NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Bcl6 |
BCL6, transcription repressor |
acts_upstream_of |
ISO |
MGI:103034|MGI:2158438 (PMID:10490661) |
RGD |
PMID:10490661 |
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NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
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Fdcsp |
follicular dendritic cell secreted protein |
acts_upstream_of_or_within_negative_effect |
ISO |
MGI:7719862 (PMID:17548624) |
RGD |
PMID:17548624 |
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NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Foxp3 |
forkhead box P3 |
acts_upstream_of |
ISO |
MGI:3696705 (PMID:16275384) |
RGD |
PMID:16275384 |
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NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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Il4 |
interleukin 4 |
acts_upstream_of |
ISO |
(PMID:14988498) |
RGD |
PMID:14988498 |
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NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Stat6 |
signal transducer and activator of transcription 6 |
acts_upstream_of |
ISO |
MGI:107187 (PMID:10490661) |
RGD |
PMID:10490661 |
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NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
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Fdcsp |
follicular dendritic cell secreted protein |
acts_upstream_of_or_within_negative_effect |
ISO |
MGI:7719862 (PMID:17548624) |
RGD |
PMID:17548624 |
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NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Hspd1 |
heat shock protein family D (Hsp60) member 1 |
involved_in |
ISO |
(PMID:16148103) |
RGD |
PMID:16148103 |
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NCBI chr 9:64,073,610...64,084,332
Ensembl chr 9:56,579,201...56,589,662
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Il4 |
interleukin 4 |
acts_upstream_of |
ISO |
(PMID:14988498) |
RGD |
PMID:14988498 |
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NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Parp3 |
poly (ADP-ribose) polymerase family, member 3 |
involved_in |
ISO |
(PMID:26000965) |
RGD |
PMID:26000965 |
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NCBI chr 8:115,989,721...115,995,822
Ensembl chr 8:107,111,012...107,116,782
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Fdcsp |
follicular dendritic cell secreted protein |
involved_in |
ISO |
MGI:6723808|MGI:7719862 (PMID:24399151) |
RGD |
PMID:24399151 |
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NCBI chr14:20,169,691...20,173,983
Ensembl chr14:20,169,691...20,173,983
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Bcl6 |
BCL6, transcription repressor |
acts_upstream_of_or_within |
ISO |
MGI:103034|MGI:2158438 (PMID:10490661) |
RGD |
PMID:10490661 |
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NCBI chr11:76,854,090...76,877,389
Ensembl chr11:76,854,090...76,877,389
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Foxp3 |
forkhead box P3 |
acts_upstream_of_or_within |
ISO |
MGI:3696705 (PMID:16275384) |
RGD |
PMID:16275384 |
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NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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Ndfip1 |
Nedd4 family interacting protein 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:3695433 (PMID:17137798) |
Ensembl RGD |
PMID:17137798 |
GO_REF:0000107 |
NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
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Tnfsf4 |
TNF superfamily member 4 |
involved_in |
ISO |
(PMID:12496423) |
RGD |
PMID:12496423 |
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NCBI chr13:76,256,654...76,280,133
Ensembl chr13:73,723,329...73,746,788
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Exosc3 |
exosome component 3 |
acts_upstream_of_or_within |
ISO |
(PMID:21255825) |
RGD |
PMID:21255825 |
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NCBI chr 5:64,369,495...64,374,711
Ensembl chr 5:59,573,886...59,579,060
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Exosc6 |
exosome component 6 |
acts_upstream_of_or_within |
ISO |
(PMID:21255825) |
RGD |
PMID:21255825 |
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NCBI chr19:55,931,523...55,932,937
Ensembl chr19:39,022,183...39,023,515
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Hmces |
5-hydroxymethylcytosine binding, ES cell specific |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:31806351) |
UniProt RGD |
PMID:31806351 |
GO_REF:0000024 |
NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616
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Kmt5b |
lysine methyltransferase 5B |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:28114273) |
UniProt RGD |
PMID:28114273 |
GO_REF:0000024 |
NCBI chr 1:210,429,672...210,479,042
Ensembl chr 1:201,000,444...201,049,819
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Kmt5c |
lysine methyltransferase 5C |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:28114273) |
UniProt RGD |
PMID:28114273 |
GO_REF:0000024 |
NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
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Mad2l2 |
mitotic arrest deficient 2 like 2 |
involved_in |
ISO |
(PMID:29656893) |
RGD |
PMID:29656893 |
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NCBI chr 5:163,846,678...163,859,851
Ensembl chr 5:158,563,567...158,576,693
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Paxip1 |
PAX interacting protein 1 |
involved_in |
ISO |
(PMID:20671152) |
RGD |
PMID:20671152 |
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NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
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Rif1 |
replication timing regulatory factor 1 |
involved_in |
ISO |
(PMID:23306439), (PMID:23333305), (PMID:23333306) |
RGD |
PMID:23306439 PMID:23333305 PMID:23333306 |
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NCBI chr 3:56,963,840...57,017,106
Ensembl chr 3:36,554,697...36,603,617
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Shld1 |
shieldin complex subunit 1 |
involved_in |
ISO IBA |
(PMID:29656893) GO_REF:0000033 |
RGD GO_Central |
PMID:29656893 |
GO_REF:0000033 |
NCBI chr 3:140,391,611...140,462,273
Ensembl chr 3:119,938,833...120,009,550
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Shld2 |
shieldin complex subunit 2 |
involved_in |
ISO |
(PMID:29656893) |
RGD |
PMID:29656893 |
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NCBI chr16:9,554,921...9,646,186
Ensembl chr16:9,548,660...9,639,965
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Shld3 |
shieldin complex subunit 3 |
involved_in |
ISO IBA |
(PMID:29656893) GO_REF:0000033 |
RGD GO_Central |
PMID:29656893 |
GO_REF:0000033 |
NCBI chr 2:35,297,255...35,302,071
Ensembl chr 2:35,295,859...35,302,346
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Tfrc |
transferrin receptor |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:26642240) |
UniProt RGD |
PMID:26642240 |
GO_REF:0000024 |
NCBI chr11:81,668,478...81,690,318
Ensembl chr11:68,163,413...68,185,257
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Tp53bp1 |
tumor protein p53 binding protein 1 |
involved_in |
ISO |
(PMID:23345425), (PMID:23760478) (PMID:15077110), (PMID:15159415) |
RGD |
PMID:15077110 PMID:15159415 PMID:23345425 PMID:23760478 |
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NCBI chr 3:128,620,320...128,724,716
Ensembl chr 3:108,169,980...108,269,822
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Mlh1 |
mutL homolog 1 |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:10430621) |
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
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Msh2 |
mutS homolog 2 |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:10430621) |
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
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Nsd2 |
nuclear receptor binding SET domain protein 2 |
acts_upstream_of_or_within |
ISO |
(PMID:23241889) |
RGD |
PMID:23241889 |
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NCBI chr14:81,057,727...81,135,866
Ensembl chr14:76,835,637...76,913,641
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Pms2 |
PMS1 homolog 2, mismatch repair system component |
involved_in |
ISO |
UniProtKB:Q9JK91 (PMID:10430621) |
RGD |
PMID:10430621 |
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NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
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Tgfb1 |
transforming growth factor, beta 1 |
involved_in acts_upstream_of_or_within |
ISS ISO |
GO_REF:0000024 (PMID:14988498) |
AgBase RGD |
PMID:14988498 |
GO_REF:0000024 |
NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847
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Tnfsf13 |
TNF superfamily member 13 |
acts_upstream_of_or_within involved_in |
ISO IBA |
(PMID:14988498) MGI:3038886 (PMID:14988498) GO_REF:0000033 |
RGD GO_Central |
PMID:14988498 |
GO_REF:0000033 |
NCBI chr10:54,898,805...54,901,815
Ensembl chr10:54,400,065...54,403,042
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Clcf1 |
cardiotrophin-like cytokine factor 1 |
involved_in |
ISO |
(PMID:12023368) |
RGD |
PMID:12023368 |
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NCBI chr 1:210,937,763...210,947,064
Ensembl chr 1:201,507,859...201,517,605
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Il4 |
interleukin 4 |
acts_upstream_of_or_within |
ISO |
(PMID:14988498) |
RGD |
PMID:14988498 |
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NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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Stat6 |
signal transducer and activator of transcription 6 |
acts_upstream_of_or_within |
ISO |
MGI:107187 (PMID:10490661) |
RGD |
PMID:10490661 |
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NCBI chr 7:65,365,505...65,382,825
Ensembl chr 7:63,479,642...63,498,495
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G |
Atad5 |
ATPase family, AAA domain containing 5 |
acts_upstream_of_or_within |
ISO |
MGI:4127920 (PMID:25404367) |
RGD |
PMID:25404367 |
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NCBI chr10:65,568,569...65,616,379
Ensembl chr10:65,070,689...65,117,845
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G |
Cd28 |
Cd28 molecule |
acts_upstream_of_or_within |
ISO |
MGI:1857150 (PMID:7688139) |
RGD |
PMID:7688139 |
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NCBI chr 9:69,660,316...69,689,192
Ensembl chr 9:62,166,192...62,194,685
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G |
Cd40 |
CD40 molecule |
acts_upstream_of_or_within |
ISO |
(PMID:12882831) |
RGD |
PMID:12882831 |
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NCBI chr 3:174,209,113...174,224,592
Ensembl chr 3:153,790,449...153,805,534
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G |
Ifng |
interferon gamma |
acts_upstream_of_or_within |
ISO |
(PMID:12882831) |
RGD |
PMID:12882831 |
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NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
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G |
Il2 |
interleukin 2 |
acts_upstream_of_or_within |
ISO |
MGI:1857191 (PMID:1830926) |
RGD |
PMID:1830926 |
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NCBI chr 2:121,932,968...121,937,672
Ensembl chr 2:120,004,862...120,009,566
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G |
Il4 |
interleukin 4 |
acts_upstream_of_or_within |
ISO |
(PMID:12882831), (PMID:14988498) |
RGD |
PMID:12882831 PMID:14988498 |
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NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750
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G |
Mlh1 |
mutL homolog 1 |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:10430621) |
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
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G |
Msh2 |
mutS homolog 2 |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:10430621) |
Ensembl RGD |
PMID:10430621 |
GO_REF:0000107 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
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G |
Pagr1 |
Paxip1-associated glutamate-rich protein 1 |
involved_in |
ISO |
(PMID:26744420) |
RGD |
PMID:26744420 |
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NCBI chr 1:181,622,698...181,625,024
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G |
Paxip1 |
PAX interacting protein 1 |
involved_in |
ISO |
(PMID:26744420) |
RGD |
PMID:26744420 |
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NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
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G |
Pms2 |
PMS1 homolog 2, mismatch repair system component |
involved_in |
ISO |
UniProtKB:Q9JK91 (PMID:10430621) |
RGD |
PMID:10430621 |
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NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
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G |
Ptprc |
protein tyrosine phosphatase, receptor type, C |
acts_upstream_of_or_within |
ISO |
MGI:2181288 (PMID:9015183) |
RGD |
PMID:9015183 |
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NCBI chr13:52,147,717...52,259,810
Ensembl chr13:49,596,193...49,708,692
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G |
Tbx21 |
T-box transcription factor 21 |
acts_upstream_of_or_within |
ISO |
MGI:2180194 (PMID:12882831) |
RGD |
PMID:12882831 |
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NCBI chr10:82,578,751...82,595,253
Ensembl chr10:82,082,322...82,098,831
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G |
Aplf |
aprataxin and PNKP like factor |
acts_upstream_of_or_within |
ISO |
MGI:4128102 (PMID:21211721) |
RGD |
PMID:21211721 |
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NCBI chr 4:121,627,800...121,679,980
Ensembl chr 4:120,070,471...120,122,633
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G |
Mir181b1 |
microRNA 181b-1 |
acts_upstream_of_or_within |
ISO |
(PMID:18762567) |
RGD |
PMID:18762567 |
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NCBI chr13:52,037,228...52,037,337
Ensembl chr13:49,485,688...49,485,797
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G |
Mir181b2 |
microRNA 181b-2 |
acts_upstream_of_or_within |
ISO |
(PMID:18762567) |
RGD |
PMID:18762567 |
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NCBI chr 3:43,026,666...43,026,753
Ensembl chr 3:22,616,948...22,617,035
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G |
Supt6h |
SPT6 homolog, histone chaperone and transcription elongation factor |
involved_in |
ISO |
(PMID:21518874) |
RGD |
PMID:21518874 |
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NCBI chr10:63,601,990...63,638,851
Ensembl chr10:63,103,921...63,140,780
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G |
Foxp3 |
forkhead box P3 |
acts_upstream_of_or_within |
ISO |
MGI:3696705 (PMID:16275384) |
RGD |
PMID:16275384 |
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NCBI chr X:17,580,380...17,601,181
Ensembl chr X:14,908,494...14,923,838
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G |
Il27ra |
interleukin 27 receptor subunit alpha |
acts_upstream_of_or_within |
ISO |
MGI:3525439 (PMID:11057672) |
RGD |
PMID:11057672 |
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NCBI chr19:41,014,730...41,026,740
Ensembl chr19:24,109,972...24,121,938
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G |
Ndfip1 |
Nedd4 family interacting protein 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:3695433 (PMID:17137798) |
Ensembl RGD |
PMID:17137798 |
GO_REF:0000107 |
NCBI chr18:30,265,808...30,316,068
Ensembl chr18:30,250,613...30,322,311
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G |
Slc15a4 |
solute carrier family 15 member 4 |
involved_in |
IEA ISO ISS |
GO_REF:0000107 (PMID:25310967) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:25310967 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr12:34,684,583...34,718,429
Ensembl chr12:29,063,015...29,082,480
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G |
Mlh1 |
mutL homolog 1 |
acts_upstream_of_or_within |
ISO |
MGI:1857946 (PMID:11828012) |
RGD |
PMID:11828012 |
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NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
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G |
Msh2 |
mutS homolog 2 |
acts_upstream_of_or_within |
ISO |
MGI:109352|MGI:1857940|MGI:2151801|MGI:2680817 (PMID:11828012), (PMID:14563316), (PMID:14568978), (PMID:15494304), (PMID:15955838) |
RGD |
PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838 |
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NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
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G |
Msh3 |
mutS homolog 3 |
acts_upstream_of_or_within |
ISO |
MGI:1858056 (PMID:15238604) |
RGD |
PMID:15238604 |
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NCBI chr 2:23,444,326...23,585,777
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G |
Msh6 |
mutS homolog 6 |
acts_upstream_of_or_within |
ISO |
MGI:1858014 (PMID:15238604) |
RGD |
PMID:15238604 |
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NCBI chr 6:12,316,190...12,333,505
Ensembl chr 6:6,562,632...6,579,956
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G |
Pms2 |
PMS1 homolog 2, mismatch repair system component |
acts_upstream_of_or_within |
ISO |
MGI:1857947 (PMID:11828012) |
RGD |
PMID:11828012 |
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NCBI chr12:15,790,478...15,814,790
Ensembl chr12:10,676,764...10,701,066
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G |
Ung |
uracil-DNA glycosylase |
acts_upstream_of_or_within |
ISO |
MGI:101816|MGI:2182610 (PMID:15494304) |
RGD |
PMID:15494304 |
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NCBI chr12:48,145,838...48,154,789
Ensembl chr12:42,485,276...42,494,206
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G |
Mlh1 |
mutL homolog 1 |
acts_upstream_of_or_within |
ISO |
MGI:101816 (PMID:12743174) |
RGD |
PMID:12743174 |
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NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617
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G |
Msh2 |
mutS homolog 2 |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 MGI:101938 (PMID:12743174) |
GO_Central RGD |
PMID:12743174 |
GO_REF:0000033 |
NCBI chr 6:12,567,368...12,626,534
Ensembl chr 6:6,813,795...6,872,938
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G |
Bcl11b |
BCL11 transcription factor B |
acts_upstream_of_or_within |
ISO |
MGI:2663971 (PMID:12717433) |
RGD |
PMID:12717433 |
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NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224
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G |
Lef1 |
lymphoid enhancer binding factor 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:98507 (PMID:9462507) |
Ensembl RGD |
PMID:9462507 |
GO_REF:0000107 |
NCBI chr 2:222,340,541...222,453,931
Ensembl chr 2:219,666,592...219,779,794
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G |
Lig4 |
DNA ligase 4 |
acts_upstream_of_or_within |
ISO |
MGI:1857732 (PMID:10911993) |
RGD |
PMID:10911993 |
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NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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G |
Prkdc |
protein kinase, DNA-activated, catalytic subunit |
acts_upstream_of_or_within |
ISO |
MGI:2383951 (PMID:9768755) |
RGD |
PMID:9768755 |
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NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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G |
Tcf7 |
transcription factor 7 |
acts_upstream_of_or_within |
ISO |
MGI:96770 (PMID:9462507) |
RGD |
PMID:9462507 |
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NCBI chr10:36,924,363...36,954,279
Ensembl chr10:36,423,445...36,453,535
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G |
Atm |
ATM serine/threonine kinase |
acts_upstream_of_or_within |
ISO |
MGI:104779 (PMID:23836881) |
RGD |
PMID:23836881 |
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NCBI chr 8:62,724,939...62,829,040
Ensembl chr 8:53,831,093...53,932,437
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G |
Dcaf1 |
DDB1 and CUL4 associated factor 1 |
involved_in |
ISO |
(PMID:22157821) |
RGD |
PMID:22157821 |
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NCBI chr 8:107,466,229...107,540,633
Ensembl chr 8:107,474,312...107,540,627
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G |
Dclre1c |
DNA cross-link repair 1C |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 (PMID:23836881) |
Ensembl RGD |
PMID:23836881 |
GO_REF:0000107 |
NCBI chr17:79,684,988...79,718,399
Ensembl chr17:74,776,935...74,809,186
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G |
Hmgb1 |
high mobility group box 1 |
involved_in |
ISO |
(PMID:9166431) |
RGD |
PMID:9166431 |
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NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565 Ensembl chr16:5,901,586...5,978,565
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G |
Lig1 |
DNA ligase 1 |
NOT|involved_in |
ISO |
(PMID:9809069) |
RGD |
PMID:9809069 |
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NCBI chr 1:83,243,043...83,281,707
Ensembl chr 1:74,165,842...74,204,413
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G |
Lig3 |
DNA ligase 3 |
NOT|involved_in |
ISO |
(PMID:9809069) |
RGD |
PMID:9809069 |
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NCBI chr10:68,215,371...68,238,705
Ensembl chr10:67,717,812...67,798,414
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G |
Lig4 |
DNA ligase 4 |
involved_in acts_upstream_of_or_within |
ISO |
(PMID:9809069) MGI:1857732 (PMID:10716994), (PMID:15194694) |
RGD |
PMID:9809069 PMID:10716994 PMID:15194694 |
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NCBI chr16:86,220,345...86,228,930
Ensembl chr16:79,518,312...79,527,040
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G |
Prkdc |
protein kinase, DNA-activated, catalytic subunit |
acts_upstream_of_or_within |
ISO |
MGI:107202 (PMID:23836881) |
RGD |
PMID:23836881 |
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NCBI chr11:98,544,952...98,762,499
Ensembl chr11:85,040,792...85,257,952
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G |
Rag1 |
recombination activating 1 |
involved_in acts_upstream_of_or_within |
ISO IBA |
(PMID:14670978) (PMID:10601033), (PMID:1547488), (PMID:20122409), (PMID:8284210) MGI:97849 (PMID:2360047) GO_REF:0000033 |
RGD GO_Central |
PMID:1547488 PMID:2360047 PMID:8284210 PMID:10601033 PMID:14670978 PMID:20122409 More...
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GO_REF:0000033 |
NCBI chr 3:108,372,087...108,383,184
Ensembl chr 3:87,917,004...87,928,291
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G |
Rag2 |
recombination activating 2 |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 (PMID:1547488), (PMID:18033247) MGI:97848 (PMID:2360047) |
GO_Central RGD |
PMID:1547488 PMID:2360047 PMID:18033247 |
GO_REF:0000033 |
NCBI chr 3:108,357,399...108,367,186
Ensembl chr 3:87,902,238...87,911,066
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G |
Xrcc4 |
X-ray repair cross complementing 4 |
acts_upstream_of_or_within |
ISO |
MGI:1926771 (PMID:10716994) |
RGD |
PMID:10716994 |
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NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
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G |
Xrcc6 |
X-ray repair cross complementing 6 |
acts_upstream_of_or_within |
ISO |
MGI:2179954 (PMID:10716994) |
RGD |
PMID:10716994 |
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NCBI chr 7:115,423,026...115,443,884
Ensembl chr 7:113,543,057...113,563,762
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Term paths to the root
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