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ONTOLOGY REPORT - ANNOTATIONS


Term:immune system development
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Accession:GO:0002520 term browser browse the term
Definition:The process whose specific outcome is the progression of an organismal system whose objective is to provide calibrated responses by an organism to a potential internal or invasive threat, over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process.



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immune system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (PMID:8372353)
(PMID:7812968)
MGI PMID:7812968 PMID:8372353 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004
JBrowse link
G Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit involved_in ISO GO_Central GO_REF:0000119 NCBI chr 6:118,564,201...119,174,345
Ensembl chr 6:118,564,201...119,173,851
JBrowse link
G Gata3 GATA binding protein 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
JBrowse link
G Ro60 Ro60, Y RNA binding protein acts_upstream_of_or_within IMP (PMID:12788971) MGI PMID:12788971 NCBI chr 1:143,626,528...143,652,794
Ensembl chr 1:143,626,528...143,652,806
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (PMID:15183723) MGI PMID:15183723 NCBI chr 9:63,554,048...63,665,276
Ensembl chr 9:63,554,049...63,665,276
JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within IMP (PMID:19861679) MGI PMID:19861679 NCBI chr 2:153,187,750...153,245,927
Ensembl chr 2:153,187,749...153,245,927
JBrowse link
G Bmncr bone marrow associated noncoding RNA acts_upstream_of_or_within IMP
IDA
(PMID:30352426) MGI PMID:30352426 NCBI chr 1:133,905,026...133,934,187
Ensembl chr 1:133,889,480...133,943,069
JBrowse link
G Ctc1 CTS telomere maintenance complex component 1 acts_upstream_of_or_within IMP (PMID:22531781) MGI PMID:22531781 NCBI chr11:68,906,014...68,927,299
Ensembl chr11:68,906,737...68,927,299
JBrowse link
G Fancb Fanconi anemia, complementation group B acts_upstream_of_or_within IMP (PMID:26658157) MGI PMID:26658157 NCBI chr  X:163,763,678...163,780,266
Ensembl chr  X:163,763,588...163,780,268
JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within IMP (PMID:14962901) MGI PMID:14962901 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464
JBrowse link
G Lipa lysosomal acid lipase A acts_upstream_of_or_within IMP (PMID:20348241) MGI PMID:20348241 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874
JBrowse link
G Lrp5 low density lipoprotein receptor-related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,634,825...3,736,574
Ensembl chr19:3,634,828...3,736,564
JBrowse link
G Lrrc17 leucine rich repeat containing 17 involved_in IDA (PMID:19336404) UniProt PMID:19336404 NCBI chr 5:21,748,525...21,780,909
Ensembl chr 5:21,748,557...21,780,902
JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within IMP
IDA
(PMID:25751060) MGI PMID:25751060 NCBI chr  X:7,114,228...7,114,295
Ensembl chr  X:7,114,228...7,114,295
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in ISO
IEA
GO_Central
Ensembl
GO_REF:0000107 GO_REF:0000119 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446
JBrowse link
G Sbds SBDS ribosome maturation factor involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 5:130,274,573...130,284,371
Ensembl chr 5:130,274,572...130,284,371
JBrowse link
G Trp53 transformation related protein 53 involved_in ISO
IEA
GO_Central
Ensembl
GO_REF:0000107 GO_REF:0000119 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
central tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxj1 forkhead box J1 involved_in IMP (PMID:16339515) BHF-UCL PMID:16339515 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225
JBrowse link
central tolerance induction to self antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in IBA
ISS
ISO
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444
JBrowse link
hematopoietic or lymphoid organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within IMP (PMID:19861679) MGI PMID:19861679 NCBI chr 2:153,187,750...153,245,927
Ensembl chr 2:153,187,749...153,245,927
JBrowse link
immunoglobulin heavy chain V-D-J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in TAS (PMID:23531880) MGI PMID:23531880 NCBI chr 6:47,507,208...47,613,843
Ensembl chr 6:47,507,073...47,572,275
JBrowse link
G Polb polymerase (DNA directed), beta acts_upstream_of_or_within IMP (PMID:24388753) MGI PMID:24388753 NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451
JBrowse link
G Yy1 YY1 transcription factor involved_in IMP (PMID:23531880) MGI PMID:23531880 NCBI chr12:108,758,841...108,786,074
Ensembl chr12:108,758,899...108,786,074
JBrowse link
immunoglobulin V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyren cell cycle regulator of NHEJ involved_in IMP (PMID:30017584), (PMID:31795137) UniProt PMID:30017584 PMID:31795137 NCBI chr 6:34,848,706...34,855,024
Ensembl chr 6:34,848,706...34,854,995
JBrowse link
G Foxp1 forkhead box P1 acts_upstream_of_or_within IMP (PMID:16819554) MGI PMID:16819554 NCBI chr 6:98,902,303...99,510,587
Ensembl chr 6:98,902,299...99,499,682
JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:9823897) GO_Central
MGI
PMID:9823897 GO_REF:0000033 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686
JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr 1:75,006,505...75,101,870
Ensembl chr 1:75,006,298...75,101,844
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within
involved_in
IMP
IBA
(PMID:9768755) MGI
GO_Central
PMID:9768755 GO_REF:0000033 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within
involved_in
IMP
IBA
ISO
(PMID:16428437) MGI
GO_Central
PMID:16428437 GO_REF:0000033 NCBI chr10:80,245,375...80,269,814
Ensembl chr10:80,245,348...80,269,481
JBrowse link
G Xrcc4 X-ray repair complementing defective repair in Chinese hamster cells 4 acts_upstream_of_or_within
involved_in
IMP
IBA
(PMID:9875844) MGI
GO_Central
PMID:9875844 GO_REF:0000033 NCBI chr13:89,997,033...90,237,727
Ensembl chr13:89,922,146...90,237,727
JBrowse link
isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase acts_upstream_of_or_within
involved_in
IMP (PMID:17713479)
(PMID:21518874)
MGI
UniProt
PMID:17713479 PMID:21518874 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Atad5 ATPase family, AAA domain containing 5 acts_upstream_of IMP (PMID:25404367) MGI PMID:25404367 NCBI chr11:79,980,205...80,026,623
Ensembl chr11:79,980,226...80,026,620
JBrowse link
G Batf basic leucine zipper transcription factor, ATF-like involved_in IMP (PMID:20421391), (PMID:21572431) UniProt PMID:20421391 PMID:21572431 NCBI chr12:85,733,494...85,755,861
Ensembl chr12:85,733,443...85,755,861
JBrowse link
G Cd40lg CD40 ligand involved_in IDA (PMID:7529792) UniProt PMID:7529792 NCBI chr  X:56,257,448...56,269,402
Ensembl chr  X:56,257,503...56,269,402
JBrowse link
G Ercc1 excision repair cross-complementing rodent repair deficiency, complementation group 1 acts_upstream_of_or_within IMP (PMID:15280420) MGI PMID:15280420 NCBI chr 7:19,079,016...19,090,449
Ensembl chr 7:19,078,703...19,090,449
JBrowse link
G Exo1 exonuclease 1 acts_upstream_of_or_within IMP (PMID:14716311) MGI PMID:14716311 NCBI chr 1:175,708,334...175,738,962
Ensembl chr 1:175,708,147...175,741,055
JBrowse link
G Exosc3 exosome component 3 involved_in IMP (PMID:21255825) UniProt PMID:21255825 NCBI chr 4:45,316,613...45,320,616
Ensembl chr 4:45,316,613...45,342,732
JBrowse link
G Exosc6 exosome component 6 involved_in IMP (PMID:21255825) UniProt PMID:21255825 NCBI chr 8:111,782,971...111,784,296
Ensembl chr 8:111,782,971...111,784,296
JBrowse link
G Icosl icos ligand involved_in NAS (PMID:11343122) UniProt PMID:11343122 NCBI chr10:77,904,921...77,915,359
Ensembl chr10:77,905,136...77,919,747
JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within IMP (PMID:17713479) MGI PMID:17713479 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686
JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within IMP (PMID:12743174) MGI PMID:12743174 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859
JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within IMP (PMID:10430621)
(PMID:12743174)
MGI PMID:10430621 PMID:12743174 NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141
JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within IGI
IMP
(PMID:17015724)
(PMID:16618598)
MGI PMID:16618598 PMID:17015724 NCBI chr17:88,282,478...88,298,320
Ensembl chr17:88,282,490...88,298,320
JBrowse link
G Nbn nibrin involved_in IDA (PMID:15668383) UniProt PMID:15668383 NCBI chr 4:15,955,388...15,992,589
Ensembl chr 4:15,957,925...15,992,589
JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (PMID:25124037)
(PMID:31182790)
MGI PMID:25124037 PMID:31182790 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262
JBrowse link
G Pcyt1a phosphate cytidylyltransferase 1, choline, alpha isoform involved_in IMP (PMID:19139091) UniProt PMID:19139091 NCBI chr16:32,249,739...32,293,883
Ensembl chr16:32,249,739...32,293,888
JBrowse link
G Rnf168 ring finger protein 168 involved_in IMP (PMID:20080757) UniProt PMID:20080757 NCBI chr16:32,096,279...32,120,260
Ensembl chr16:32,096,277...32,120,252
JBrowse link
G Rnf8 ring finger protein 8 involved_in IMP (PMID:20080757) UniProt PMID:20080757 NCBI chr17:29,833,763...29,860,638
Ensembl chr17:29,833,764...29,863,965
JBrowse link
G Sanbr SANT and BTB domain regulator of CSR involved_in IDA
IBA
(PMID:33831416) UniProt
GO_Central
PMID:33831416 GO_REF:0000033 NCBI chr11:23,514,949...23,596,409
Ensembl chr11:23,514,961...23,583,631
JBrowse link
G Swap70 SWA-70 protein acts_upstream_of_or_within IDA (PMID:9642267) MGI PMID:9642267 NCBI chr 7:109,820,890...109,882,720
Ensembl chr 7:109,820,918...109,882,713
JBrowse link
G Ung uracil DNA glycosylase acts_upstream_of_or_within IGI (PMID:17015724) MGI PMID:17015724 NCBI chr 5:114,268,427...114,277,382
Ensembl chr 5:114,268,447...114,277,384
JBrowse link
G Xrcc4 X-ray repair complementing defective repair in Chinese hamster cells 4 acts_upstream_of_or_within IMP (PMID:17713479) MGI PMID:17713479 NCBI chr13:89,997,033...90,237,727
Ensembl chr13:89,922,146...90,237,727
JBrowse link
isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 C-C motif chemokine receptor 6 involved_in IMP (PMID:27174992) UniProt PMID:27174992 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
isotype switching to IgD isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdcsp follicular dendritic cell secreted protein acts_upstream_of_positive_effect IMP (PMID:17548624) MGI PMID:17548624 NCBI chr 5:88,056,638...88,062,030
Ensembl chr 5:88,056,638...88,062,030
JBrowse link
isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of IMP
IGI
(PMID:10490661) MGI PMID:10490661 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602
JBrowse link
G Fdcsp follicular dendritic cell secreted protein acts_upstream_of_or_within_negative_effect IMP (PMID:17548624) MGI PMID:17548624 NCBI chr 5:88,056,638...88,062,030
Ensembl chr 5:88,056,638...88,062,030
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of IMP (PMID:16275384) MGI PMID:16275384 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Il4 interleukin 4 acts_upstream_of IDA (PMID:14988498) MGI PMID:14988498 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Stat6 signal transducer and activator of transcription 6 acts_upstream_of IGI (PMID:10490661) MGI PMID:10490661 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826
JBrowse link
isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdcsp follicular dendritic cell secreted protein acts_upstream_of_or_within_negative_effect IMP (PMID:17548624) MGI PMID:17548624 NCBI chr 5:88,056,638...88,062,030
Ensembl chr 5:88,056,638...88,062,030
JBrowse link
G Hspd1 heat shock protein 1 (chaperonin) involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 1:55,116,992...55,127,402
Ensembl chr 1:55,116,994...55,127,402
JBrowse link
G Il4 interleukin 4 acts_upstream_of IDA (PMID:14988498) MGI PMID:14988498 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
lymph node development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl21a C-C motif chemokine ligand 21 (serine) acts_upstream_of_or_within IMP (PMID:12732660) MGI PMID:12732660 NCBI chr 4:42,772,860...42,773,991
Ensembl chr 4:42,772,860...42,773,993
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 involved_in TAS (PMID:12732660) BHF-UCL PMID:12732660 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
G Cd248 CD248 antigen, endosialin acts_upstream_of_or_within IMP (PMID:20432232) MGI PMID:20432232 NCBI chr19:5,118,106...5,120,668
Ensembl chr19:5,118,106...5,120,710
JBrowse link
G Cd2ap CD2-associated protein acts_upstream_of_or_within IMP (PMID:24218450) MGI PMID:24218450 NCBI chr17:43,059,857...43,187,593
Ensembl chr17:43,103,842...43,187,556
JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 acts_upstream_of_or_within
involved_in
IMP
IDA
(PMID:12732660)
(PMID:19783990)
MGI
BHF-UCL
PMID:12732660 PMID:19783990 NCBI chr 5:96,104,785...96,108,927
Ensembl chr 5:96,104,810...96,108,927
JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 acts_upstream_of_or_within IMP (PMID:12732660) MGI PMID:12732660 NCBI chr 9:44,423,084...44,437,741
Ensembl chr 9:44,423,084...44,473,174
JBrowse link
G Fadd Fas associated via death domain involved_in IGI (PMID:21876153) UniProt PMID:21876153 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200
JBrowse link
G Flt3 FMS-like tyrosine kinase 3 acts_upstream_of_or_within IMP (PMID:20457904) MGI PMID:20457904 NCBI chr 5:147,267,551...147,337,299
Ensembl chr 5:147,267,551...147,337,299
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within TAS (PMID:10687308) MGI PMID:10687308 NCBI chr12:25,143,798...25,146,091
Ensembl chr12:25,143,798...25,147,139
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (PMID:7923373) MGI PMID:7923373 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926
JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within IMP (PMID:10704459) MGI PMID:10704459 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851
JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within IMP (PMID:12732660) MGI PMID:12732660 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262
JBrowse link
G Jak3 Janus kinase 3 acts_upstream_of_or_within TAS (PMID:10687308) MGI PMID:10687308 NCBI chr 8:72,129,027...72,143,221
Ensembl chr 8:72,128,940...72,143,219
JBrowse link
G Lta lymphotoxin A acts_upstream_of_or_within IMP (PMID:9368616)
(PMID:10415063)
(PMID:8171322)
(PMID:7636227)
(PMID:9565643)
MGI PMID:7636227 PMID:8171322 PMID:9368616 PMID:9565643 PMID:10415063 NCBI chr17:35,422,141...35,424,568
Ensembl chr17:35,422,141...35,424,327
JBrowse link
G Ltb lymphotoxin B acts_upstream_of_or_within IMP (PMID:9256477)
(PMID:9133428)
MGI PMID:9133428 PMID:9256477 NCBI chr17:35,413,483...35,415,281
Ensembl chr17:35,413,415...35,415,296
JBrowse link
G Ltbr lymphotoxin B receptor acts_upstream_of_or_within TAS (PMID:10415063) MGI PMID:10415063 NCBI chr 6:125,283,534...125,291,026
Ensembl chr 6:125,283,534...125,290,848
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 acts_upstream_of_or_within TAS (PMID:10687308) MGI PMID:10687308 NCBI chr 3:135,290,416...135,397,422
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 acts_upstream_of_or_within TAS (PMID:10687308) MGI PMID:10687308 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (PMID:10926756)
(PMID:10790368)
MGI PMID:10790368 PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Pdpn podoplanin involved_in IMP (PMID:25347465) UniProt PMID:25347465 NCBI chr 4:142,993,979...143,026,134
Ensembl chr 4:142,994,001...143,026,134
JBrowse link
G Polb polymerase (DNA directed), beta acts_upstream_of_or_within IMP (PMID:24388753) MGI PMID:24388753 NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451
JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 acts_upstream_of_or_within IGI (PMID:23583643) MGI PMID:23583643 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548
JBrowse link
G Rc3h2 ring finger and CCCH-type zinc finger domains 2 acts_upstream_of_or_within IGI (PMID:23583643) MGI PMID:23583643 NCBI chr 2:37,260,078...37,313,007
Ensembl chr 2:37,260,081...37,312,915
JBrowse link
G Rcbtb2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 acts_upstream_of_or_within IMP (PMID:26291700) MGI PMID:26291700 NCBI chr14:73,376,185...73,421,495
Ensembl chr14:73,360,477...73,445,283
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in IGI (PMID:21876153) UniProt PMID:21876153 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322
JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within
involved_in
IMP (PMID:14691482) MGI
UniProt
PMID:14691482 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583
JBrowse link
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within IMP (PMID:23180825) MGI PMID:23180825 NCBI chr11:72,342,464...72,380,797
Ensembl chr11:72,342,464...72,380,730
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (PMID:1436033) MGI PMID:1436033 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tlx1 T cell leukemia, homeobox 1 acts_upstream_of_or_within TAS (PMID:10687308) MGI PMID:10687308 NCBI chr19:45,138,531...45,145,382
Ensembl chr19:45,139,119...45,145,382
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:10500098) GO_Central
MGI
PMID:10500098 GO_REF:0000033 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 acts_upstream_of_or_within TAS (PMID:10687308) MGI PMID:10687308 NCBI chr14:78,514,886...78,545,483
Ensembl chr14:78,514,885...78,545,483
JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within IMP (PMID:20818394) MGI PMID:20818394 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557
JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in IMP (PMID:22585710) MGI PMID:22585710 NCBI chr10:39,488,930...39,531,303
Ensembl chr10:39,488,930...39,531,303
JBrowse link
mucosa-associated lymphoid tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (PMID:10926756) MGI PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IMP (PMID:15247480) MGI PMID:15247480 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583
JBrowse link
natural killer cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-T23 histocompatibility 2, T region locus 23 involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:36,340,869...36,343,593
Ensembl chr17:36,340,665...36,343,747
JBrowse link
G Havcr2 hepatitis A virus cellular receptor 2 involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr11:46,345,758...46,372,082
Ensembl chr11:46,345,762...46,372,082
JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 involved_in ISO (PMID:25578313) UniProt PMID:25578313 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772
JBrowse link
negative regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp3 poly (ADP-ribose) polymerase family, member 3 involved_in IMP (PMID:26000965) UniProt PMID:26000965 NCBI chr 9:106,347,521...106,354,148
Ensembl chr 9:106,347,521...106,354,148
JBrowse link
negative regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdcsp follicular dendritic cell secreted protein involved_in IMP (PMID:24399151) MGI PMID:24399151 NCBI chr 5:88,056,638...88,062,030
Ensembl chr 5:88,056,638...88,062,030
JBrowse link
negative regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of_or_within IMP
IGI
(PMID:10490661) MGI PMID:10490661 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:16275384) MGI PMID:16275384 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within IMP (PMID:17137798) MGI PMID:17137798 NCBI chr18:38,551,960...38,598,250
Ensembl chr18:38,543,449...38,598,356
JBrowse link
negative regulation of T cell anergy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd86 CD86 antigen involved_in ISO RGD
GO_Central
PMID:18424705 GO_REF:0000096 RGD:4892228 NCBI chr16:36,389,318...36,486,439
Ensembl chr16:36,424,231...36,486,443
JBrowse link
negative regulation of tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdcd1 programmed cell death 1 acts_upstream_of_or_within IMP (PMID:23636058) MGI PMID:23636058 NCBI chr 1:93,966,027...93,980,278
Ensembl chr 1:93,966,027...93,980,278
JBrowse link
peripheral B cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-M3 histocompatibility 2, M region locus 3 involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
peripheral T cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in IBA
IDA
(PMID:23993652) GO_Central
UniProt
PMID:23993652 GO_REF:0000033 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444
JBrowse link
Peyer's patch development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:10720488) MGI PMID:10720488 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit acts_upstream_of_or_within IMP (PMID:5037658) MGI PMID:5037658 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within IGI (PMID:17452521) MGI PMID:17452521 NCBI chr12:25,143,798...25,146,091
Ensembl chr12:25,143,798...25,147,139
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (PMID:7923373) MGI PMID:7923373 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (PMID:10790368) MGI PMID:10790368 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Rorc RAR-related orphan receptor gamma involved_in IMP (PMID:14691482) UniProt PMID:14691482 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583
JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995
JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of_or_within IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550
JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within IGI (PMID:17452521) MGI PMID:17452521 NCBI chr10:80,245,375...80,269,814
Ensembl chr10:80,245,348...80,269,481
JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within IMP (PMID:20818394) MGI PMID:20818394 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557
JBrowse link
Peyer's patch morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Artn artemin involved_in IMP (PMID:17322904) UniProt PMID:17322904 NCBI chr 4:117,783,105...117,787,993
Ensembl chr 4:117,783,359...117,786,960
JBrowse link
G Foxl1 forkhead box L1 acts_upstream_of_or_within IMP (PMID:12648490) MGI PMID:12648490 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383
JBrowse link
G Ret ret proto-oncogene involved_in IMP (PMID:17322904) UniProt PMID:17322904 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679
JBrowse link
positive regulation of B cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:16973387) MGI PMID:16973387 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
positive regulation of central B cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxj1 forkhead box J1 involved_in IMP (PMID:16002694) BHF-UCL PMID:16002694 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225
JBrowse link
positive regulation of interleukin-4-dependent isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IMP (PMID:12496423) BHF-UCL PMID:12496423 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981
JBrowse link
positive regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc3 exosome component 3 acts_upstream_of_or_within IMP (PMID:21255825) MGI PMID:21255825 NCBI chr 4:45,316,613...45,320,616
Ensembl chr 4:45,316,613...45,342,732
JBrowse link
G Exosc6 exosome component 6 acts_upstream_of_or_within IMP (PMID:21255825) MGI PMID:21255825 NCBI chr 8:111,782,971...111,784,296
Ensembl chr 8:111,782,971...111,784,296
JBrowse link
G Hmces 5-hydroxymethylcytosine (hmC) binding, ES cell specific involved_in IDA (PMID:31806351) UniProt PMID:31806351 NCBI chr 6:87,890,889...87,913,603
Ensembl chr 6:87,890,917...87,913,611
JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in IMP (PMID:28114273) UniProt PMID:28114273 NCBI chr19:3,816,436...3,868,303
Ensembl chr19:3,817,421...3,868,303
JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in IMP (PMID:28114273) UniProt PMID:28114273 NCBI chr 7:4,743,091...4,750,513
Ensembl chr 7:4,743,114...4,750,513
JBrowse link
G Mad2l2 MAD2 mitotic arrest deficient-like 2 involved_in ISO
IEA
GO_Central
Ensembl
GO_REF:0000107 GO_REF:0000119 NCBI chr 4:148,214,615...148,230,161
Ensembl chr 4:148,214,841...148,230,156
JBrowse link
G Paxip1 PAX interacting (with transcription-activation domain) protein 1 involved_in IMP (PMID:20671152) UniProt PMID:20671152 NCBI chr 5:27,947,044...27,999,326
Ensembl chr 5:27,945,078...27,996,689
JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IMP (PMID:23306439), (PMID:23333305), (PMID:23333306) UniProt PMID:23306439 PMID:23333305 PMID:23333306 NCBI chr 2:51,962,725...52,016,781
Ensembl chr 2:51,962,844...52,012,395
JBrowse link
G Shld1 shieldin complex subunit 1 involved_in IBA
IEA
ISO
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:132,528,871...132,592,975
Ensembl chr 2:132,528,851...132,592,975
JBrowse link
G Shld2 shieldin complex subunit 2 involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr14:33,958,905...34,032,528
Ensembl chr14:33,958,990...34,032,450
JBrowse link
G Shld3 shieldin complex subunit 3 involved_in IBA
ISO
IEA
GO_Central
Ensembl
GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr13:104,310,228...104,314,967
Ensembl chr13:104,310,230...104,314,947
JBrowse link
G Tfrc transferrin receptor involved_in ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000119 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612
JBrowse link
G Trp53bp1 transformation related protein 53 binding protein 1 involved_in IMP
ISO
(PMID:15077110), (PMID:15159415) UniProt
GO_Central
PMID:15077110 PMID:15159415 GO_REF:0000119 NCBI chr 2:121,025,316...121,126,830
Ensembl chr 2:121,023,762...121,101,888
JBrowse link
positive regulation of isotype switching to IgA isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 involved_in IMP (PMID:10430621) CAFA PMID:10430621 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859
JBrowse link
G Msh2 mutS homolog 2 involved_in IMP (PMID:10430621) CAFA PMID:10430621 NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 acts_upstream_of_or_within IMP (PMID:23241889) MGI PMID:23241889 NCBI chr 5:33,974,286...34,055,310
Ensembl chr 5:33,978,069...34,055,319
JBrowse link
G Pms2 PMS1 homolog2, mismatch repair system component involved_in IMP
IGI
(PMID:10430621) CAFA PMID:10430621 NCBI chr 5:143,846,379...143,922,538
Ensembl chr 5:143,846,782...143,870,786
Ensembl chr 5:143,846,782...143,870,786
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within
involved_in
ISO
ISS
(PMID:14988498) MGI
AgBase
PMID:14988498 GO_REF:0000024 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tnfsf13 tumor necrosis factor (ligand) superfamily, member 13 acts_upstream_of_or_within
involved_in
IMP
IBA
ISO
(PMID:14988498) MGI
GO_Central
PMID:14988498 GO_REF:0000033 NCBI chr11:69,573,403...69,576,380
Ensembl chr11:69,573,672...69,576,610
JBrowse link
positive regulation of isotype switching to IgE isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clcf1 cardiotrophin-like cytokine factor 1 involved_in IDA (PMID:12023368) BHF-UCL PMID:12023368 NCBI chr19:4,264,479...4,273,548
Ensembl chr19:4,264,292...4,273,544
JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within IDA (PMID:14988498) MGI PMID:14988498 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Stat6 signal transducer and activator of transcription 6 acts_upstream_of_or_within IGI (PMID:10490661) MGI PMID:10490661 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826
JBrowse link
positive regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family, AAA domain containing 5 acts_upstream_of_or_within IMP (PMID:25404367) MGI PMID:25404367 NCBI chr11:79,980,205...80,026,623
Ensembl chr11:79,980,226...80,026,620
JBrowse link
G Cd28 CD28 antigen acts_upstream_of_or_within IMP (PMID:7688139) MGI PMID:7688139 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518
JBrowse link
G Cd40 CD40 antigen acts_upstream_of_or_within IDA (PMID:12882831) MGI PMID:12882831 NCBI chr 2:164,897,535...164,913,574
Ensembl chr 2:164,897,547...164,914,868
JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within IDA (PMID:12882831) MGI PMID:12882831 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Il2 interleukin 2 acts_upstream_of_or_within IMP (PMID:1830926) MGI PMID:1830926 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108
JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within IDA (PMID:12882831), (PMID:14988498) MGI PMID:12882831 PMID:14988498 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496
JBrowse link
G Mlh1 mutL homolog 1 involved_in IMP (PMID:10430621) CAFA PMID:10430621 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859
JBrowse link
G Msh2 mutS homolog 2 involved_in IMP (PMID:10430621) CAFA PMID:10430621 NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141
JBrowse link
G Pagr1a PAXIP1 associated glutamate rich protein 1A involved_in IMP (PMID:26744420) UniProt PMID:26744420 NCBI chr 7:126,614,223...126,616,524
Ensembl chr 7:126,614,205...126,616,524
Ensembl chr 7:126,614,205...126,616,524
JBrowse link
G Paxip1 PAX interacting (with transcription-activation domain) protein 1 involved_in IMP (PMID:26744420) UniProt PMID:26744420 NCBI chr 5:27,947,044...27,999,326
Ensembl chr 5:27,945,078...27,996,689
JBrowse link
G Pms2 PMS1 homolog2, mismatch repair system component involved_in IGI
IMP
(PMID:10430621) CAFA PMID:10430621 NCBI chr 5:143,846,379...143,922,538
Ensembl chr 5:143,846,782...143,870,786
Ensembl chr 5:143,846,782...143,870,786
JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C acts_upstream_of_or_within IMP (PMID:9015183) MGI PMID:9015183 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446
JBrowse link
G Tbx21 T-box 21 acts_upstream_of_or_within IMP (PMID:12882831) MGI PMID:12882831 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157
JBrowse link
positive regulation of macrophage tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irak3 interleukin-1 receptor-associated kinase 3 involved_in IMP (PMID:12150927) BHF-UCL PMID:12150927 NCBI chr10:119,977,553...120,038,035
Ensembl chr10:119,977,553...120,038,035
JBrowse link
positive regulation of peripheral T cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:16532000) MGI PMID:16532000 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
positive regulation of T cell anergy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblb Casitas B-lineage lymphoma b acts_upstream_of_or_within IMP (PMID:14973438) MGI PMID:14973438 NCBI chr16:51,851,593...52,028,410
Ensembl chr16:51,851,588...52,028,411
JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide acts_upstream_of_or_within IDA (PMID:14973438) MGI PMID:14973438 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:16945588) MGI PMID:16945588 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Itch itchy, E3 ubiquitin protein ligase acts_upstream_of_or_within IMP (PMID:14973438) MGI PMID:14973438 NCBI chr 2:154,975,401...155,068,775
Ensembl chr 2:154,975,429...155,068,775
JBrowse link
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:51,366,999...51,372,709
Ensembl chr10:51,367,052...51,372,707
JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:51,356,757...51,362,417
Ensembl chr10:51,356,728...51,362,799
JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 involved_in IMP (PMID:31328159) UniProt PMID:31328159 NCBI chr 1:136,770,300...136,888,186
Ensembl chr 1:136,770,309...136,888,186
JBrowse link
positive regulation of T cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:16945588) MGI PMID:16945588 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 acts_upstream_of_or_within IMP (PMID:9712583) MGI PMID:9712583 NCBI chr 8:25,074,148...25,086,987
Ensembl chr 8:25,074,152...25,087,025
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:16973387) MGI PMID:16973387 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
positive regulation of tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2-M3 histocompatibility 2, M region locus 3 involved_in ISO GO_Central GO_REF:0000119 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375
JBrowse link
positive regulation of tolerance induction to self antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:16973387) MGI PMID:16973387 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
regulation of isotype switching term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor acts_upstream_of_or_within IMP (PMID:21211721) MGI PMID:21211721 NCBI chr 6:87,605,407...87,649,244
Ensembl chr 6:87,605,406...87,649,175
JBrowse link
G Mir181b-1 microRNA 181b-1 acts_upstream_of_or_within IDA (PMID:18762567) MGI PMID:18762567 NCBI chr 1:137,894,377...137,894,456
Ensembl chr 1:137,894,377...137,894,456
JBrowse link
G Mir181b-2 microRNA 181b-2 acts_upstream_of_or_within IDA (PMID:18762567) MGI PMID:18762567 NCBI chr 2:38,743,842...38,743,930
Ensembl chr 2:38,743,842...38,743,930
JBrowse link
G Supt6 SPT6, histone chaperone and transcription elongation factor involved_in IMP (PMID:21518874) UniProt PMID:21518874 NCBI chr11:78,097,575...78,136,798
Ensembl chr11:78,097,572...78,136,813
JBrowse link
regulation of isotype switching to IgG isotypes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:16275384) MGI PMID:16275384 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Il27ra interleukin 27 receptor, alpha acts_upstream_of_or_within IMP (PMID:11057672) MGI PMID:11057672 NCBI chr 8:84,756,915...84,769,250
Ensembl chr 8:84,756,923...84,769,218
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 acts_upstream_of_or_within IMP (PMID:17137798) MGI PMID:17137798 NCBI chr18:38,551,960...38,598,250
Ensembl chr18:38,543,449...38,598,356
JBrowse link
G Slc15a4 solute carrier family 15, member 4 involved_in IMP (PMID:25310967) UniProt PMID:25310967 NCBI chr 5:127,668,795...127,710,356
Ensembl chr 5:127,672,728...127,709,961
JBrowse link
regulation of T cell anergy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in IMP (PMID:17377532) UniProt PMID:17377532 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G H2-M2 histocompatibility 2, M region locus 2 involved_in ISO (PMID:20008523) BHF-UCL PMID:20008523 NCBI chr17:37,791,742...37,794,445
Ensembl chr17:37,791,742...37,794,443
JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 involved_in IMP (PMID:21498666) UniProt PMID:21498666 NCBI chr 1:106,099,599...106,321,975
Ensembl chr 1:106,099,482...106,321,980
JBrowse link
G Runx1 runt related transcription factor 1 involved_in IMP (PMID:17377532) UniProt PMID:17377532 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037
JBrowse link
regulation of T cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il2ra interleukin 2 receptor, alpha chain involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 2:11,647,603...11,698,005
Ensembl chr 2:11,647,618...11,698,004
JBrowse link
regulation of tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO
IMP
(PMID:18631454) GO_Central
UniProt
PMID:18631454 GO_REF:0000119 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299
JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 acts_upstream_of_or_within IMP (PMID:15670816) MGI PMID:15670816 NCBI chr 2:60,040,086...60,079,555
Ensembl chr 2:60,040,231...60,081,020
JBrowse link
regulation of tolerance induction dependent upon immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Havcr2 hepatitis A virus cellular receptor 2 involved_in IMP (PMID:14556006) UniProt PMID:14556006 NCBI chr11:46,345,758...46,372,082
Ensembl chr11:46,345,762...46,372,082
JBrowse link
regulation of tolerance induction to self antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr7 C-C motif chemokine receptor 7 involved_in TAS (PMID:17785582) BHF-UCL PMID:17785582 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
somatic diversification of immune receptors via somatic mutation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific acts_upstream_of_or_within IDA (PMID:23209284) MGI PMID:23209284 NCBI chr 3:89,622,321...89,660,756
Ensembl chr 3:89,622,329...89,660,753
JBrowse link
somatic diversification of immunoglobulins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO GO_Central GO_REF:0000119 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Ctnnbl1 catenin, beta like 1 involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr 2:157,579,321...157,733,823
Ensembl chr 2:157,579,321...157,733,534
JBrowse link
G Polb polymerase (DNA directed), beta acts_upstream_of_or_within IMP (PMID:24388753) MGI PMID:24388753 NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451
JBrowse link
somatic diversification of immunoglobulins involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mad2l2 MAD2 mitotic arrest deficient-like 2 involved_in NAS (PMID:29656893) ComplexPortal PMID:29656893 NCBI chr 4:148,214,615...148,230,161
Ensembl chr 4:148,214,841...148,230,156
JBrowse link
G Shld1 shieldin complex subunit 1 involved_in NAS (PMID:29656893) ComplexPortal PMID:29656893 NCBI chr 2:132,528,871...132,592,975
Ensembl chr 2:132,528,851...132,592,975
JBrowse link
G Shld2 shieldin complex subunit 2 involved_in NAS (PMID:29656893) ComplexPortal PMID:29656893 NCBI chr14:33,958,905...34,032,528
Ensembl chr14:33,958,990...34,032,450
JBrowse link
G Shld3 shieldin complex subunit 3 involved_in NAS (PMID:29656893) ComplexPortal PMID:29656893 NCBI chr13:104,310,228...104,314,967
Ensembl chr13:104,310,230...104,314,947
JBrowse link
somatic hypermutation of immunoglobulin genes term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO
ISS
GO_Central
UniProt
GO_REF:0000024 GO_REF:0000119 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Exo1 exonuclease 1 acts_upstream_of_or_within IMP (PMID:14716311) MGI PMID:14716311 NCBI chr 1:175,708,334...175,738,962
Ensembl chr 1:175,708,147...175,741,055
JBrowse link
G Hmces 5-hydroxymethylcytosine (hmC) binding, ES cell specific involved_in ISO
IDA
(PMID:35450882) GO_Central
UniProt
PMID:35450882 GO_REF:0000119 NCBI chr 6:87,890,889...87,913,603
Ensembl chr 6:87,890,917...87,913,611
JBrowse link
G Ighd immunoglobulin heavy constant delta acts_upstream_of_or_within IMP (PMID:8418208) MGI PMID:8418208 NCBI chr12:113,371,155...113,379,944
Ensembl chr12:113,370,224...113,379,944
JBrowse link
G Mcm3ap minichromosome maintenance complex component 3 associated protein involved_in ISS
ISO
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000119 NCBI chr10:76,304,736...76,351,693
Ensembl chr10:76,304,761...76,351,691
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:10092760), (PMID:10429667) GO_Central
MGI
PMID:10092760 PMID:10429667 GO_REF:0000033 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859
JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
IMP
IGI
(PMID:9607916)
(PMID:14568978)
(PMID:9607915)
(PMID:9697842), (PMID:9697843)
(PMID:15494304)
MGI PMID:9607915 PMID:9607916 PMID:9697842 PMID:9697843 PMID:14568978 More... NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141
JBrowse link
G Msh3 mutS homolog 3 NOT|acts_upstream_of_or_within IMP (PMID:10662804) MGI PMID:10662804 NCBI chr13:92,348,387...92,491,515
Ensembl chr13:92,348,380...92,491,511
JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within IMP (PMID:10662804), (PMID:15238604), (PMID:17015724)
(PMID:16618598)
MGI PMID:10662804 PMID:15238604 PMID:16618598 PMID:17015724 NCBI chr17:88,282,478...88,298,320
Ensembl chr17:88,282,490...88,298,320
JBrowse link
G Nuggc nuclear GTPase, germinal center associated acts_upstream_of_or_within IMP (PMID:22833677) MGI PMID:22833677 NCBI chr14:65,830,901...65,885,893
Ensembl chr14:65,835,995...65,885,980
JBrowse link
G Pms2 PMS1 homolog2, mismatch repair system component involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:9618520)
(PMID:10429667)
GO_Central
CAFA
MGI
PMID:9618520 PMID:10429667 GO_REF:0000033 NCBI chr 5:143,846,379...143,922,538
Ensembl chr 5:143,846,782...143,870,786
Ensembl chr 5:143,846,782...143,870,786
JBrowse link
G Polb polymerase (DNA directed), beta acts_upstream_of_or_within IMP (PMID:24388753) MGI PMID:24388753 NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451
JBrowse link
G Polm polymerase (DNA directed), mu acts_upstream_of_or_within IMP (PMID:15789338) MGI PMID:15789338 NCBI chr11:5,777,860...5,788,831
Ensembl chr11:5,777,860...5,788,016
JBrowse link
G Polq polymerase (DNA directed), theta involved_in IMP (PMID:16172387), (PMID:16222339), (PMID:16890500) UniProt PMID:16172387 PMID:16222339 PMID:16890500 NCBI chr16:36,832,104...36,922,321
Ensembl chr16:36,832,148...36,915,779
JBrowse link
G Samhd1 SAM domain and HD domain, 1 involved_in IMP (PMID:29669924) UniProt PMID:29669924 NCBI chr 2:156,939,454...156,977,016
Ensembl chr 2:156,939,453...156,977,185
JBrowse link
G Ung uracil DNA glycosylase acts_upstream_of_or_within IGI
IMP
(PMID:15494304)
(PMID:17015724)
MGI PMID:15494304 PMID:17015724 NCBI chr 5:114,268,427...114,277,382
Ensembl chr 5:114,268,447...114,277,384
JBrowse link
somatic recombination of immunoglobulin gene segments term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 acts_upstream_of_or_within IMP (PMID:11828012) MGI PMID:11828012 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859
JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within IGI
IMP
(PMID:15494304)
(PMID:14563316), (PMID:15955838)
(PMID:11828012)
(PMID:14568978)
MGI PMID:11828012 PMID:14563316 PMID:14568978 PMID:15494304 PMID:15955838 NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141
JBrowse link
G Msh3 mutS homolog 3 involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:15238604) GO_Central
MGI
PMID:15238604 GO_REF:0000033 NCBI chr13:92,348,387...92,491,515
Ensembl chr13:92,348,380...92,491,511
JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within IMP (PMID:15238604) MGI PMID:15238604 NCBI chr17:88,282,478...88,298,320
Ensembl chr17:88,282,490...88,298,320
JBrowse link
G Pms2 PMS1 homolog2, mismatch repair system component acts_upstream_of_or_within IMP (PMID:11828012) MGI PMID:11828012 NCBI chr 5:143,846,379...143,922,538
Ensembl chr 5:143,846,782...143,870,786
Ensembl chr 5:143,846,782...143,870,786
JBrowse link
G Ung uracil DNA glycosylase acts_upstream_of_or_within IMP
IGI
(PMID:15494304) MGI PMID:15494304 NCBI chr 5:114,268,427...114,277,382
Ensembl chr 5:114,268,447...114,277,384
JBrowse link
somatic recombination of immunoglobulin genes involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 acts_upstream_of_or_within IGI (PMID:12743174) MGI PMID:12743174 NCBI chr 9:111,057,296...111,100,854
Ensembl chr 9:111,057,296...111,100,859
JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within
involved_in
IGI
IBA
(PMID:12743174) MGI
GO_Central
PMID:12743174 GO_REF:0000033 NCBI chr17:87,979,960...88,031,141
Ensembl chr17:87,979,758...88,031,141
JBrowse link
spleen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IMP (PMID:2065352) MGI PMID:2065352 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239
JBrowse link
G Adam17 a disintegrin and metallopeptidase domain 17 involved_in IMP (PMID:17371977) BHF-UCL PMID:17371977 NCBI chr12:21,373,510...21,423,633
Ensembl chr12:21,373,510...21,423,633
JBrowse link
G Ahr aryl-hydrocarbon receptor involved_in IMP (PMID:7732381), (PMID:8692887) DFLAT PMID:7732381 PMID:8692887 NCBI chr12:35,547,978...35,584,988
Ensembl chr12:35,547,973...35,585,037
JBrowse link
G Barx1 BarH-like homeobox 1 acts_upstream_of_or_within IMP (PMID:17855428) MGI PMID:17855428 NCBI chr13:48,816,512...48,819,983
Ensembl chr13:48,816,474...48,819,983
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IGI
IMP
(PMID:15818405) MGI PMID:15818405 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within IGI (PMID:15818405) MGI PMID:15818405 NCBI chr 2:127,967,958...128,004,467
Ensembl chr 2:127,967,958...128,004,467
JBrowse link
G Bcl3 B cell leukemia/lymphoma 3 acts_upstream_of_or_within IMP (PMID:10586052) MGI PMID:10586052 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit acts_upstream_of_or_within IMP (PMID:5037658) MGI PMID:5037658 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843
JBrowse link
G Cdh17 cadherin 17 involved_in IMP (PMID:15688343) UniProt PMID:15688343 NCBI chr 4:11,758,157...11,817,905
Ensembl chr 4:11,758,147...11,817,895
JBrowse link
G Cdkn2b cyclin dependent kinase inhibitor 2B acts_upstream_of_or_within IGI (PMID:22560297) MGI PMID:22560297 NCBI chr 4:89,224,526...89,229,269
Ensembl chr 4:89,224,536...89,229,276
JBrowse link
G Cfc1 cryptic, EGF-CFC family member 1 acts_upstream_of_or_within IMP (PMID:10521397) MGI PMID:10521397 NCBI chr 1:34,574,729...34,583,392
Ensembl chr 1:34,574,729...34,583,394
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in IMP (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422
JBrowse link
G Coa5 cytochrome C oxidase assembly factor 5 acts_upstream_of_or_within IMP (PMID:36301669) MGI PMID:36301669 NCBI chr 1:37,456,166...37,469,184
Ensembl chr 1:37,456,165...37,469,184
JBrowse link
G Ctc1 CTS telomere maintenance complex component 1 acts_upstream_of_or_within IMP (PMID:22531781) MGI PMID:22531781 NCBI chr11:68,906,014...68,927,299
Ensembl chr11:68,906,737...68,927,299
JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (PMID:21307095) MGI PMID:21307095 NCBI chr12:104,654,001...104,718,331
Ensembl chr12:104,654,001...104,718,211
JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 acts_upstream_of_or_within IMP (PMID:10359562) MGI PMID:10359562 NCBI chr 2:120,848,372...120,867,358
Ensembl chr 2:120,848,372...120,867,553
JBrowse link
G Fadd Fas associated via death domain involved_in IGI (PMID:21876153) UniProt PMID:21876153 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200
JBrowse link
G Fam210b family with sequence similarity 210, member B acts_upstream_of_or_within IMP (PMID:39000360) MGI PMID:39000360 NCBI chr 2:172,187,444...172,197,669
Ensembl chr 2:172,187,485...172,197,669
JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within IMP (PMID:18199416) MGI PMID:18199416 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (PMID:15329346) MGI PMID:15329346 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Flt3 FMS-like tyrosine kinase 3 acts_upstream_of_or_within IGI (PMID:22674806) MGI PMID:22674806 NCBI chr 5:147,267,551...147,337,299
Ensembl chr 5:147,267,551...147,337,299
JBrowse link
G Flvcr1 feline leukemia virus subgroup C cellular receptor 1 acts_upstream_of_or_within IMP (PMID:18258918) MGI PMID:18258918 NCBI chr 1:190,738,029...190,758,387
Ensembl chr 1:190,738,044...190,758,355
JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within IMP (PMID:14962901) MGI PMID:14962901 NCBI chr11:96,209,093...96,212,464
Ensembl chr11:96,209,093...96,212,464
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within IMP (PMID:9376320) MGI PMID:9376320 NCBI chr13:44,881,817...45,075,119
Ensembl chr13:44,882,950...45,075,119
JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A acts_upstream_of_or_within IGI (PMID:22674806) MGI PMID:22674806 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594
JBrowse link
G Lipa lysosomal acid lipase A acts_upstream_of_or_within IMP (PMID:19179613) MGI PMID:19179613 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874
JBrowse link
G Myb myeloblastosis oncogene acts_upstream_of_or_within IMP (PMID:19360001) MGI PMID:19360001 NCBI chr10:21,000,829...21,036,883
Ensembl chr10:21,000,834...21,036,883
JBrowse link
G n-TUtca2 nuclear encoded tRNA selenocysteine 2 (anticodon TCA) acts_upstream_of_or_within IMP (PMID:29615406) MGI PMID:29615406 NCBI chr 7:19,035,169...19,035,255 JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 acts_upstream_of_or_within IMP (PMID:10586052) MGI PMID:10586052 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (PMID:31182790) MGI PMID:31182790 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (PMID:10207146), (PMID:10790368)
(PMID:10926756)
MGI PMID:10207146 PMID:10790368 PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within
involved_in
IGI
ISO
TAS
(PMID:22560297)
(PMID:9621431)
MGI
GO_Central
BHF-UCL
PMID:9621431 PMID:22560297 GO_REF:0000119 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within IMP (PMID:10572046)
(PMID:19208343)
(PMID:10449756), (PMID:15329346)
MGI PMID:10449756 PMID:10572046 PMID:15329346 PMID:19208343 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 ISO RGD PMID:17341476 RGD:401827282 NCBI chr 2:91,014,406...91,033,189
Ensembl chr 2:91,014,406...91,033,179
JBrowse link
G Onecut1 one cut domain, family member 1 acts_upstream_of_or_within IMP (PMID:12874218) MGI PMID:12874218 NCBI chr 9:74,769,203...74,796,930
Ensembl chr 9:74,769,203...74,799,063
JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 acts_upstream_of_or_within IMP
IGI
(PMID:15944191)
(PMID:22560297)
MGI PMID:15944191 PMID:22560297 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839
JBrowse link
G Pcid2 PCI domain containing 2 involved_in IMP (PMID:20870947) UniProt PMID:20870947 NCBI chr 8:13,125,476...13,155,343
Ensembl chr 8:13,127,189...13,155,459
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in IMP (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240
JBrowse link
G Pkn1 protein kinase N1 acts_upstream_of_or_within IMP (PMID:23223530) MGI PMID:23223530 NCBI chr 8:84,393,162...84,425,819
Ensembl chr 8:84,393,165...84,425,808
JBrowse link
G Polb polymerase (DNA directed), beta acts_upstream_of_or_within IMP (PMID:24388753) MGI PMID:24388753 NCBI chr 8:23,118,135...23,143,482
Ensembl chr 8:23,118,142...23,143,451
JBrowse link
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma acts_upstream_of_or_within IMP (PMID:16129705) MGI PMID:16129705 NCBI chr12:55,327,594...55,350,024
Ensembl chr12:55,325,776...55,349,783
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide involved_in ISO
IEA
RGD
Ensembl
GO_Central
PMID:22981234 GO_REF:0000096 GO_REF:0000107 RGD:8696027 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Psmb9 proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) ISO RGD PMID:24707720 RGD:9854625 NCBI chr17:34,401,006...34,406,347
Ensembl chr17:34,400,961...34,406,738
JBrowse link
G Rbm15 RNA binding motif protein 15 acts_upstream_of_or_within IMP (PMID:18981216) MGI PMID:18981216 NCBI chr 3:107,212,827...107,244,102
Ensembl chr 3:107,232,737...107,240,989
JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 acts_upstream_of_or_within IGI (PMID:23583643) MGI PMID:23583643 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548
JBrowse link
G Rc3h2 ring finger and CCCH-type zinc finger domains 2 acts_upstream_of_or_within IGI (PMID:23583643) MGI PMID:23583643 NCBI chr 2:37,260,078...37,313,007
Ensembl chr 2:37,260,081...37,312,915
JBrowse link
G Rcbtb2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 acts_upstream_of_or_within IMP (PMID:26291700) MGI PMID:26291700 NCBI chr14:73,376,185...73,421,495
Ensembl chr14:73,360,477...73,445,283
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in IGI (PMID:21876153) UniProt PMID:21876153 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322
JBrowse link
G Samd9l sterile alpha motif domain containing 9-like acts_upstream_of_or_within IMP (PMID:24029230) MGI PMID:24029230 NCBI chr 6:3,372,257...3,399,458
Ensembl chr 6:3,372,257...3,399,572
JBrowse link
G Sco1 SCO1 cytochrome c oxidase assembly protein acts_upstream_of_or_within IMP (PMID:36301669) MGI PMID:36301669 NCBI chr11:66,943,473...66,958,270
Ensembl chr11:66,943,496...66,957,896
JBrowse link
G Slc40a1 solute carrier family 40 (iron-regulated transporter), member 1 acts_upstream_of_or_within IMP (PMID:15342464) MGI PMID:15342464 NCBI chr 1:45,947,230...45,965,690
Ensembl chr 1:45,947,228...45,965,683
JBrowse link
G Tcf21 transcription factor 21 involved_in IMP (PMID:10944221) UniProt PMID:10944221 NCBI chr10:22,693,162...22,696,042
Ensembl chr10:22,693,180...22,696,073
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within IMP (PMID:21803851) MGI PMID:21803851 NCBI chr 3:133,169,438...133,250,882
Ensembl chr 3:133,169,440...133,250,900
JBrowse link
G Tlx1 T cell leukemia, homeobox 1 acts_upstream_of_or_within IGI
IMP
(PMID:15944191)
(PMID:11356032)
MGI PMID:11356032 PMID:15944191 NCBI chr19:45,138,531...45,145,382
Ensembl chr19:45,139,119...45,145,382
JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in IMP (PMID:22585710) MGI PMID:22585710 NCBI chr10:39,488,930...39,531,303
Ensembl chr10:39,488,930...39,531,303
JBrowse link
spleen trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc40a1 solute carrier family 40 (iron-regulated transporter), member 1 acts_upstream_of_or_within IMP (PMID:15342464) MGI PMID:15342464 NCBI chr 1:45,947,230...45,965,690
Ensembl chr 1:45,947,228...45,965,683
JBrowse link
T cell anergy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cblb Casitas B-lineage lymphoma b acts_upstream_of IMP (PMID:14973438) MGI PMID:14973438 NCBI chr16:51,851,593...52,028,410
Ensembl chr16:51,851,588...52,028,411
JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide acts_upstream_of IDA (PMID:14973438) MGI PMID:14973438 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of IMP (PMID:16945588) MGI PMID:16945588 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Itch itchy, E3 ubiquitin protein ligase acts_upstream_of IMP (PMID:14973438) MGI PMID:14973438 NCBI chr 2:154,975,401...155,068,775
Ensembl chr 2:154,975,429...155,068,775
JBrowse link
T cell receptor V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:12717433) MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (PMID:9462507) MGI PMID:9462507 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005
JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within IMP (PMID:10911993) MGI PMID:10911993 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (PMID:9768755) MGI PMID:9768755 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (PMID:9462507) MGI PMID:9462507 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158
JBrowse link
T cell tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of IMP (PMID:16945588) MGI PMID:16945588 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Icos inducible T cell co-stimulator involved_in ISO
IBA
RGD
GO_Central
PMID:16220623 GO_REF:0000033 GO_REF:0000096 RGD:1624271 NCBI chr 1:60,999,909...61,039,481
Ensembl chr 1:61,017,086...61,039,479
JBrowse link
thymus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IMP (PMID:2065352) MGI PMID:2065352 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239
JBrowse link
G Adrm1 adhesion regulating molecule 1 26S proteasome ubiquitin receptor involved_in IMP (PMID:21048919) BHF-UCL PMID:21048919 NCBI chr 2:179,813,381...179,818,076
Ensembl chr 2:179,813,278...179,818,079
JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (PMID:16025118)
(PMID:17002498)
MGI PMID:16025118 PMID:17002498 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within IMP (PMID:19861679) MGI PMID:19861679 NCBI chr 2:153,187,750...153,245,927
Ensembl chr 2:153,187,749...153,245,927
JBrowse link
G Atm ataxia telangiectasia mutated acts_upstream_of_or_within IMP (PMID:8843194) MGI PMID:8843194 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040
JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:12717433) MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP
IGI
(PMID:9241272)
(PMID:15818405)
MGI PMID:9241272 PMID:15818405 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within IGI (PMID:15818405) MGI PMID:15818405 NCBI chr 2:127,967,958...128,004,467
Ensembl chr 2:127,967,958...128,004,467
JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IGI (PMID:18952847) MGI PMID:18952847 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397
JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit acts_upstream_of_or_within IMP (PMID:5037658) MGI PMID:5037658 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843
JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within IMP (PMID:23793062) MGI PMID:23793062 NCBI chr 8:106,412,642...106,424,827
Ensembl chr 8:106,412,906...106,424,819
JBrowse link
G Ccnb2 cyclin B2 acts_upstream_of_or_within IMP (PMID:9539739) MGI PMID:9539739 NCBI chr 9:70,314,971...70,328,836
Ensembl chr 9:70,314,974...70,328,829
JBrowse link
G Chaserr CHD2 adjacent suppressive regulatory RNA involved_in IMP (PMID:27783602) MGI PMID:27783602 NCBI chr 7:73,189,546...73,208,143
Ensembl chr 7:73,189,549...73,211,743
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IGI
IMP
(PMID:20549734) MGI PMID:20549734 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422
JBrowse link
G Coa5 cytochrome C oxidase assembly factor 5 acts_upstream_of_or_within IMP (PMID:36301669) MGI PMID:36301669 NCBI chr 1:37,456,166...37,469,184
Ensembl chr 1:37,456,165...37,469,184
JBrowse link
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like acts_upstream_of_or_within IGI (PMID:16399080) MGI PMID:16399080 NCBI chr16:17,269,849...17,305,304
Ensembl chr16:17,269,851...17,305,298
JBrowse link
G Ctc1 CTS telomere maintenance complex component 1 acts_upstream_of_or_within IMP (PMID:22531781) MGI PMID:22531781 NCBI chr11:68,906,014...68,927,299
Ensembl chr11:68,906,737...68,927,299
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:16025118) MGI PMID:16025118 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Ephb3 Eph receptor B3 involved_in IMP (PMID:19598115) UniProt PMID:19598115 NCBI chr16:21,023,530...21,042,054
Ensembl chr16:21,023,505...21,042,055
JBrowse link
G Fadd Fas associated via death domain involved_in IGI (PMID:21876153) UniProt PMID:21876153 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200
JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in IEA
ISO
Ensembl
GO_Central
GO_REF:0000107 GO_REF:0000119 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within IMP (PMID:17000704) MGI PMID:17000704 NCBI chr 7:144,392,349...144,397,085
Ensembl chr 7:144,391,820...144,398,173
JBrowse link
G Foxe1 forkhead box E1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:46,343,644...46,345,774
Ensembl chr 4:46,343,609...46,346,412
JBrowse link
G Foxi3 forkhead box I3 involved_in IMP (PMID:31412026) UniProt PMID:31412026 NCBI chr 6:70,933,590...70,938,050
Ensembl chr 6:70,933,515...70,938,050
JBrowse link
G Foxn1 forkhead box N1 involved_in
acts_upstream_of_or_within
ISO
IMP
(PMID:22072979) RGD
GO_Central
MGI
PMID:8790387 PMID:22072979 GO_REF:0000096 RGD:1300512 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (PMID:17082577) MGI PMID:17082577 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IMP (PMID:19008477) BHF-UCL PMID:19008477 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IMP (PMID:20122914) BHF-UCL PMID:20122914 NCBI chr16:29,883,259...29,886,614
Ensembl chr16:29,883,202...29,886,614
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:16488668 RGD:10002779 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within IMP
IGI
TAS
(PMID:7635047)
(PMID:9520319)
(PMID:11476574)
(PMID:19968565)
MGI PMID:7635047 PMID:9520319 PMID:11476574 PMID:19968565 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (PMID:7923373) MGI PMID:7923373 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within IMP (PMID:9376320) MGI PMID:9376320 NCBI chr13:44,881,817...45,075,119
Ensembl chr13:44,882,950...45,075,119
JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within IGI (PMID:20549734) MGI PMID:20549734 NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981
JBrowse link
G Mad1l1 MAD1 mitotic arrest deficient 1-like 1 acts_upstream_of_or_within IDA (PMID:11313860) MGI PMID:11313860 NCBI chr 5:139,994,444...140,307,346
Ensembl chr 5:139,994,444...140,307,307
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within IMP (PMID:19164599) MGI PMID:19164599 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 acts_upstream_of_or_within IGI (PMID:18952847) MGI PMID:18952847 NCBI chr 9:64,093,066...64,160,887
Ensembl chr 9:64,093,052...64,160,913
JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 acts_upstream_of_or_within IGI (PMID:18952847) MGI PMID:18952847 NCBI chr10:80,941,749...80,960,531
Ensembl chr10:80,941,749...80,969,809
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 acts_upstream_of_or_within IGI (PMID:18952847) MGI PMID:18952847 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within IGI (PMID:18952847) MGI PMID:18952847 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991
JBrowse link
G Myb myeloblastosis oncogene acts_upstream_of_or_within IMP (PMID:17927961) MGI PMID:17927961 NCBI chr10:21,000,829...21,036,883
Ensembl chr10:21,000,834...21,036,883
JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 acts_upstream_of_or_within IMP (PMID:9768749) MGI PMID:9768749 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 ISO RGD PMID:17341476 RGD:401827282 NCBI chr 2:91,014,406...91,033,189
Ensembl chr 2:91,014,406...91,033,179
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IGI (PMID:11476574) MGI PMID:11476574 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215
JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 acts_upstream_of_or_within IMP (PMID:15581866) MGI PMID:15581866 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839
JBrowse link
G Prdx2 peroxiredoxin 2 acts_upstream_of_or_within IMP (PMID:15259009) MGI PMID:15259009 NCBI chr 8:85,696,251...85,701,440
Ensembl chr 8:85,696,216...85,701,463
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide involved_in ISO
IEA
RGD
Ensembl
GO_Central
PMID:22981234 GO_REF:0000096 GO_REF:0000107 RGD:8696027 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within IGI
IMP
(PMID:17698590) MGI PMID:17698590 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within IGI (PMID:17698590) MGI PMID:17698590 NCBI chr 1:180,054,569...180,091,030
Ensembl chr 1:180,054,569...180,091,003
JBrowse link
G Psmb9 proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) ISO RGD PMID:18457575 RGD:9850287 NCBI chr17:34,401,006...34,406,347
Ensembl chr17:34,400,961...34,406,738
JBrowse link
G Raf1 v-raf-leukemia viral oncogene 1 acts_upstream_of_or_within IGI (PMID:18952847) MGI PMID:18952847 NCBI chr 6:115,595,530...115,653,596
Ensembl chr 6:115,595,028...115,653,596
JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within IGI (PMID:18684012) MGI PMID:18684012 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in IGI (PMID:21876153) UniProt PMID:21876153 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322
JBrowse link
G Sco1 SCO1 cytochrome c oxidase assembly protein acts_upstream_of_or_within IMP (PMID:36301669) MGI PMID:36301669 NCBI chr11:66,943,473...66,958,270
Ensembl chr11:66,943,496...66,957,896
JBrowse link
G Shh sonic hedgehog involved_in IMP (PMID:19109233) BHF-UCL PMID:19109233 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Six1 sine oculis-related homeobox 1 acts_upstream_of_or_within IMP
IGI
(PMID:16530750) MGI PMID:16530750 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661
JBrowse link
G Six4 sine oculis-related homeobox 4 acts_upstream_of_or_within IGI (PMID:16530750) MGI PMID:16530750 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230
JBrowse link
G Slc46a2 solute carrier family 46, member 2 acts_upstream_of_or_within IGI (PMID:18684012) MGI PMID:18684012 NCBI chr 4:59,905,899...59,915,056
Ensembl chr 4:59,905,126...59,915,056
JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (PMID:18952847) MGI PMID:18952847 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101
JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within
involved_in
IMP
ISS
ISO
(PMID:17916582)
(PMID:9268629)
(PMID:31412026)
MGI
UniProt
GO_Central
PMID:9268629 PMID:17916582 PMID:31412026 GO_REF:0000119 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I acts_upstream_of_or_within IMP (PMID:17078885) MGI PMID:17078885 NCBI chr 4:47,353,258...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within IMP (PMID:10890980) MGI PMID:10890980 NCBI chr 7:87,073,979...87,142,637
Ensembl chr 7:87,073,979...87,142,720
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in IMP (PMID:22201126) UniProt PMID:22201126 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724
JBrowse link
G Zmpste24 zinc metallopeptidase, STE24 acts_upstream_of_or_within IMP (PMID:11923874) MGI PMID:11923874 NCBI chr 4:120,916,434...120,955,452
Ensembl chr 4:120,916,434...120,955,438
JBrowse link
thymus epithelium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in IBA
IMP
(PMID:19015306) GO_Central
UniProt
PMID:19015306 GO_REF:0000033 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444
JBrowse link
G Foxn1 forkhead box N1 involved_in IMP (PMID:21109991) UniProt PMID:21109991 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384
JBrowse link
tolerance induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3 complement component 3 ISO RGD PMID:16555329 RGD:5129541 NCBI chr17:57,510,967...57,535,136
Ensembl chr17:57,510,970...57,535,136
JBrowse link
G Ccr4 C-C motif chemokine receptor 4 acts_upstream_of_or_within IMP (PMID:15809349) MGI PMID:15809349 NCBI chr 9:114,319,384...114,334,544
Ensembl chr 9:114,319,384...114,333,984
JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IDA (PMID:15809349) MGI PMID:15809349 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:51,366,999...51,372,709
Ensembl chr10:51,367,052...51,372,707
JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO GO_Central GO_REF:0000119 NCBI chr10:51,356,757...51,362,417
Ensembl chr10:51,356,728...51,362,799
JBrowse link
tolerance induction to lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acod1 aconitate decarboxylase 1 involved_in IDA
ISO
(PMID:23609450) UniProt
GO_Central
PMID:23609450 GO_REF:0000119 NCBI chr14:103,284,448...103,294,009
Ensembl chr14:103,284,413...103,294,009
JBrowse link
G Tnfaip3 tumor necrosis factor, alpha-induced protein 3 involved_in ISO
IEA
GO_Central
Ensembl
GO_REF:0000107 GO_REF:0000119 NCBI chr10:18,876,658...18,891,158
Ensembl chr10:18,876,658...18,891,405
JBrowse link
tolerance induction to nonself antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C3ar1 complement component 3a receptor 1 involved_in ISO RGD
GO_Central
PMID:12514742 GO_REF:0000096 RGD:5129547 NCBI chr 6:122,824,099...122,833,116
Ensembl chr 6:122,824,097...122,833,120
JBrowse link
tolerance induction to self antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:15780990) MGI PMID:15780990 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase involved_in IBA
IMP
(PMID:9252121) GO_Central
UniProt
PMID:9252121 GO_REF:0000033 NCBI chr 4:3,676,865...3,791,613
Ensembl chr 4:3,678,115...3,813,122
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (PMID:17481928) MGI PMID:17481928 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Xkr8 X-linked Kx blood group related 8 acts_upstream_of_or_within IMP (PMID:29440417) MGI PMID:29440417 NCBI chr 4:132,452,212...132,459,916
Ensembl chr 4:132,452,208...132,459,857
JBrowse link
V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ataxia telangiectasia mutated acts_upstream_of_or_within IGI (PMID:23836881) MGI PMID:23836881 NCBI chr 9:53,348,422...53,448,125
Ensembl chr 9:53,350,449...53,448,040
JBrowse link
G Dcaf1 DDB1 and CUL4 associated factor 1 involved_in IMP (PMID:22157821) UniProt PMID:22157821 NCBI chr 9:106,691,354...106,758,191
Ensembl chr 9:106,699,073...106,758,191
JBrowse link
G Dclre1c DNA cross-link repair 1C acts_upstream_of_or_within IMP (PMID:23836881) MGI PMID:23836881 NCBI chr 2:3,425,112...3,475,248
Ensembl chr 2:3,425,168...3,465,167
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO GO_Central GO_REF:0000119 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299
JBrowse link
G Lig1 ligase I, DNA, ATP-dependent NOT|involved_in ISO (PMID:9809069) UniProt PMID:9809069 NCBI chr 7:13,011,101...13,045,351
Ensembl chr 7:13,011,239...13,045,350
JBrowse link
G Lig3 ligase III, DNA, ATP-dependent NOT|involved_in ISO (PMID:9809069) UniProt PMID:9809069 NCBI chr11:82,671,977...82,695,100
Ensembl chr11:82,671,934...82,695,100
JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within
involved_in
IMP
ISO
IDA
(PMID:10716994)
(PMID:15194694)
MGI
GO_Central
PMID:10716994 PMID:15194694 GO_REF:0000119 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IGI (PMID:23836881) MGI PMID:23836881 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within
involved_in
IGI
IBA
ISO
IMP
(PMID:2360047)
(PMID:10601033), (PMID:1547488), (PMID:20122409), (PMID:8284210)
MGI
GO_Central
UniProt
PMID:1547488 PMID:2360047 PMID:8284210 PMID:10601033 PMID:20122409 GO_REF:0000033 GO_REF:0000119 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846
JBrowse link
G Rag2 recombination activating gene 2 involved_in
acts_upstream_of_or_within
IBA
IMP
IGI
(PMID:1547488), (PMID:18033247)
(PMID:2360047)
GO_Central
UniProt
MGI
PMID:1547488 PMID:2360047 PMID:18033247 GO_REF:0000033 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874
JBrowse link
G Xrcc4 X-ray repair complementing defective repair in Chinese hamster cells 4 acts_upstream_of_or_within IMP (PMID:10716994) MGI PMID:10716994 NCBI chr13:89,997,033...90,237,727
Ensembl chr13:89,922,146...90,237,727
JBrowse link
G Xrcc6 X-ray repair complementing defective repair in Chinese hamster cells 6 acts_upstream_of_or_within IMP (PMID:10716994) MGI PMID:10716994 NCBI chr15:81,868,805...81,924,286
Ensembl chr15:81,872,036...81,924,286
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28632
    immune system process 3179
      immune system development 251
        hematopoietic or lymphoid organ development + 138
        somatic diversification of immune receptors + 90
        tolerance induction + 34
Path 2
Term Annotations click to browse term
  biological_process 28632
    developmental process 7535
      anatomical structure development 7000
        multicellular organism development 5570
          system development 4791
            immune system development 251
              hematopoietic or lymphoid organ development + 138
              somatic diversification of immune receptors + 90
              tolerance induction + 34
paths to the root