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ONTOLOGY REPORT - ANNOTATIONS


Term:antigen processing and presentation via MHC class Ib
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Accession:GO:0002475 term browser browse the term
Definition:The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC class Ib protein complex. Class Ib here refers to non-classical class I molecules, such as those of the CD1 or HLA-E gene families.



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antigen processing and presentation of endogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07000147.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G AABR07001348.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G AABR07044308.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G AABR07044383.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Azgp1 alpha-2-glycoprotein 1, zinc-binding involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:16,930,990...16,939,333 JBrowse link
G ENSRNOG00000064836 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G ENSRNOG00000070971 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G H2-m10.6l histocompatibility 2, M region locus 10.6 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,958,270...1,965,247 JBrowse link
G H60al histocompatibility 60a like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:1,382,896...1,386,846 JBrowse link
G LOC120093164 retinoic acid early-inducible protein 1-gamma-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:1,807,226...1,812,755 JBrowse link
G Raet1l retinoic acid early transcript 1L involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:1,979,433...1,984,410 JBrowse link
G Raet1ll1 retinoic acid early transcript 1L like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:1,397,219...1,437,802 JBrowse link
G RT1-A RT1 class I, locus A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RT1-A-ps RT1 class I, A, pseudogene involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:9754572) RGD PMID:9754572 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-CE1 RT1 class I, locus 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,555,779...3,559,487 JBrowse link
G RT1-CE10 RT1 class I, locus CE10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,377,284...3,380,301 JBrowse link
G RT1-CE11 RT1 class I, locus CE11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,355,393...3,358,520 JBrowse link
G RT1-CE12 RT1 class I, locus CE12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,338,907...3,342,547 JBrowse link
G RT1-CE14 RT1 class I, locus CE14 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,296,654...3,300,795 JBrowse link
G RT1-CE16 RT1 class I, locus CE16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,257,109...3,260,747 JBrowse link
G RT1-CE3 RT1 class I, locus CE3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,516,647...3,520,938 JBrowse link
G RT1-CE5 RT1 class I, locus CE5 involved_in ISO (PMID:28636952) RGD PMID:28636952 NCBI chr20:3,403,418...3,479,476 JBrowse link
G Rt1-ec3 RT1 class I, locus EC3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RT1-M1-2 RT1 class I, locus M1, gene 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,909,506...1,913,423 JBrowse link
G RT1-M1-4 RT1 class I, locus M1, gene 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,891,365...1,893,585 JBrowse link
G RT1-M1-5 RT1 class I, M1, gene 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,858,608...1,860,708 JBrowse link
G RT1-M10-ps1 RT1 class I, locus M10, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,986,817...1,988,908 JBrowse link
G RT1-M10-ps5 RT1 class I, locus M10, pseudogene 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RT1-M2 RT1 class Ib, locus M2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:978,918...981,510 JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:7584149), (PMID:8805247)
(PMID:8464890)
GO_REF:0000033
RGD
GO_Central
PMID:7584149 PMID:8464890 PMID:8805247 GO_REF:0000033 NCBI chr20:1,323,976...1,328,126 JBrowse link
G RT1-M5 RT1 class Ib, locus M5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,546,496...1,548,948 JBrowse link
G RT1-M6-2 RT1 class I, locus M6, gene 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:1,583,267...1,587,099 JBrowse link
G RT1-N1 RT1 class Ib, locus N1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G RT1-N2 RT1 class Ib, locus N2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,641,157...2,645,439 JBrowse link
G RT1-N3 RT1 class Ib, locus N3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,659,132...2,665,536 JBrowse link
G RT1-O1l1 RT1 class Ib, locus O1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,624,073...2,658,023 JBrowse link
G RT1-S3 RT1 class Ib, locus S3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,670,654...2,675,411 JBrowse link
G RT1-T24-1 RT1 class I, locus T24, gene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,761,495...2,774,871 JBrowse link
G RT1-T24-3 RT1 class I, locus T24, gene 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,718,210...2,730,604 JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:2,684,515...2,747,878 JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-A2 RT1 class Ia, locus A2 acts_upstream_of_or_within ISO (PMID:1538753) RGD PMID:1538753 NCBI chr20:4,870,939...4,910,183 JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:1538751)
(PMID:1538753)
GO_REF:0000107
RGD
Ensembl
PMID:1538751 PMID:1538753 GO_REF:0000107 NCBI chr20:4,638,257...4,652,296 JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:20195504), (PMID:30087334) RGD PMID:20195504 PMID:30087334 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-CE5 RT1 class I, locus CE5 involved_in ISO (PMID:23851683) RGD PMID:23851683 NCBI chr20:3,403,418...3,479,476 JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 acts_upstream_of_or_within ISO (PMID:16461341) RGD PMID:16461341 NCBI chr20:1,323,976...1,328,126 JBrowse link
antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin acts_upstream_of_or_within ISO (PMID:16299293) RGD PMID:16299293 NCBI chr 3:129,549,236...129,555,354 JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 acts_upstream_of_or_within ISO (PMID:16299293) RGD PMID:16299293 NCBI chr20:1,323,976...1,328,126 JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16299293)
Ensembl
RGD
PMID:16299293 GO_REF:0000107 NCBI chr20:4,638,257...4,652,296 JBrowse link
antigen processing and presentation, endogenous lipid antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd1d1 CD1d1 molecule involved_in ISO
IBA
(PMID:10523605)
GO_REF:0000033
RGD
GO_Central
PMID:10523605 GO_REF:0000033 NCBI chr 2:172,423,582...172,427,089 JBrowse link
antigen processing and presentation, exogenous lipid antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1856989 (PMID:14557411) RGD PMID:14557411 NCBI chr 2:25,600,069...25,800,937 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 acts_upstream_of_or_within ISO MGI:1856083 (PMID:14557411) RGD PMID:14557411 NCBI chr 7:8,970,249...9,005,651 JBrowse link
G Cd1d1 CD1d1 molecule involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:14557411)
GO_Central
RGD
PMID:14557411 GO_REF:0000033 NCBI chr 2:172,423,582...172,427,089 JBrowse link

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